Clone BO01220 Report

Search the DGRC for BO01220

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG10366-RA
Protein status:BO01220.pep: Inserted from web
Sequenced Size:1768

Clone Sequence Records

BO01220.3prime Sequence

824 bp (823 high quality bases) assembled on 2005-11-30

> BO01220.3prime
ATGGTCTAGAAAGCTTGCGCGATAGTCGATCATGATATGGTTATAAATAT
TATCTAACGTGGGTATAGCCGCAGCTGGGGTATCAGCTTGGGTGGCGTTC
TCCCCTCCGGGATCAGGCGCTGGTTCAGGCTGAGCATCTTGGATGACGGC
GGGATTCGAAGCTGGAGTATCCTTGGTGGCTGGCCTCGGTTTTTTGCCGA
AGGCGAAGCAGCCACTCTGTTTGGTGGCCACCGGCGACAGATTGTCCTTG
TTCTTGGTGAATGCCTTGAGCGCCTCCAGCTTGGGTATATTTCTGTTGTG
CGACCTGCCGCCGCCCGCCGCTTCTTGAGCAGCCAGCTCCTCGGGATGCG
ACTTCTTCTTGTGCGTGCGGCAGTTGGAGCCGTTGGCAAAGGTGCGGTCG
CAAAAATCGCAGGAGTAAGGCTTCAGTCCTGTGTGCAGGATGAGGTGATT
CTTCAGCGCCTTGGCGCGCTTAAACTCCCGGCCGCAGTAGTCGCACTTGT
GCTGCATCTGATCCGTGTGCACCAGTCGATGGCGATTCAAGGTGGTCCGC
GAATTCAGCTGCATTCCGCATTCGGGGCAGATGTACTTGTGCGGATCATG
CGTCTCCTTGTGGTGTTTCAGACGATTGGCCGACTTAAAGCACTTCTTGC
ACACCTCGCACTCGAAGGGGGCGTAGTCCGTGTGCTTGAGGACGTGCTCC
TTGAGCGCGCTCATCGAGTGCACACCCACACCGCACTGCTCGCAAATCAC
CGGCCGCGGCCGCTCATCCAGGTGCATGTACTGCTCGTGCTGCTGGGCGG
ATGCACTGGTGGCGAACTTCTTGT

BO01220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-PA 1737 CG10366-RA 929..1734 824..19 4030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-RA 2062 CG10366-RA 1040..1845 824..19 4030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19585351..19585915 824..260 2825 100 Minus
2L 23513712 2L 19585983..19586223 259..19 1205 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:43:36 has no hits.

BO01220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:04 Download gff for BO01220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-PA 929..1737 16..824 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:41 Download gff for BO01220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-PA 929..1737 16..824 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:17 Download gff for BO01220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 1040..1845 19..824 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:15 Download gff for BO01220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 1040..1845 19..824 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:15 Download gff for BO01220.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19585351..19585915 260..824 100 -> Minus
2L 19585983..19586223 19..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:17 Download gff for BO01220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19585351..19585915 260..824 100 -> Minus
arm_2L 19585983..19586223 19..259 100   Minus

BO01220.complete Sequence

1768 bp assembled on 2008-11-11

GenBank Submission: KX798286

> BO01220.complete
GAAGTTATCAGTCGACATGGCCGCCGCGCAGGTGGAGATGCACGCTGCTC
CGGCGGCTCCCCATGTCGATCGAAATCCCAGCAGCGACTGGCGACAGTGG
TGTCGCCTGTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCCT
CAAGAACGAGGATTCCGGCGAGGCAGCCTCCATGGAACTGGCCACCGCCA
TTGGCAAGTACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAG
ACGATATGCAGTGAGTGCCTGTCGCTGGTCACCTCGCTGGTGAATTTCTC
GGAACGGATTACCCGCGTGCAGAAGCTTTACTGCATCCTGCAGAGCACGC
CCAGCCAGGAGAGGCCAAATCTCCACGAGCTGCGCTCGAAATTTGGTTTG
CTGGACGAGGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCCGAA
GTTGGATGAACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGG
CAAACCCACTAACGCCAGAGGAAAAGCAGGAAAGCGTAGATCAGGAGCAG
GATCAGCCGACGGAGGAGCCAGATGAGCAGGATGCCGACTACGAACCGAA
TGAAGATCGTGTACTAATGAGCCTCTGCGATGTGTATGGCATTCAGGAGG
ATAACTCTTCTGCTGGCAGCTTGGATGGCTCCTCGCCGAGTACCGAAAAA
GCTGGAGAGGATGCAGCAGACTCTGAGAAAAGACACCAGTGCAACGAGTG
CTTGCGAAGCTACGCCACGTCCAAAACCCTGCAGCGCCACCTGCGCCAGG
ATCATGGCCAGACTGAGCCCACAACCGAGCAGCTGCAATGCCCGGATTGC
CCCAAGAAGTTTCGTCTACACTACCAGCTGGAGAGGCACATGAAATGGCA
CGTGCCCCTGCCCAAGCGCAAGCAGTACGCCTGTAGCAGTTGCGACAAGA
AGTTCGCCACCAGTGCATCCGCCCAGCAGCACGAGCAGTACATGCACCTG
GATGAGCGGCCGCGGCCGGTGATTTGCGAGCAGTGCGGTGTGGGTGTGCA
CTCGATGAGCGCGCTCAAGGAGCACGTCCTCAAGCACACGGACTACGCCC
CCTTCGAGTGCGAGGTGTGCAAGAAGTGCTTTAAGTCGGCCAATCGTCTG
AAACACCACAAGGAGACGCATGATCCGCACAAGTACATCTGCCCCGAATG
CGGAATGCAGCTGAATTCGCGGACCACCTTGAATCGCCATCGACTGGTGC
ACACGGATCAGATGCAGCACAAGTGCGACTACTGCGGCCGGGAGTTTAAG
CGCGCCAAGGCGCTGAAGAATCACCTCATCCTGCACACAGGACTGAAGCC
TTACTCCTGCGATTTTTGCGACCGCACCTTTGCCAACGGCTCCAACTGCC
GCACGCACAAGAAGAAGTCGCATCCCGAGGAGCTGGCTGCTCAAGAAGCG
GCGGGCGGCGGCAGGTCGCACAACAGAAATATACCCAAGCTGGAGGCGCT
CAAGGCATTCACCAAGAACAAGGACAATCTGTCGCCGGTGGCCACCAAAC
AGAGTGGCTGCTTCGCCTTCGGCAAAAAACCGAGGCCAGCCACCAAGGAT
ACTCCAGCTTCGAATCCCGCCGTCATCCAAGATGCTCAGCCTGAACCAGC
GCCTGATCCCGGAGGGGAGAACGCCACCCAAGCTGATACCCCAGCTGCGG
CTATACCCACGTTAGATAATATTTATAACCATATCATGATCGACTATCGC
GCAAGCTTTCTAGACCAT

BO01220.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-RA 1737 CG10366-PA 1..1734 17..1750 8670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-RA 2062 CG10366-RA 112..1845 17..1750 8670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19584630..19585915 224..1509 6430 100 Plus
2L 23513712 2L 19585983..19586223 1510..1750 1205 100 Plus
2L 23513712 2L 19584346..19584552 17..223 1035 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:09:47 has no hits.

BO01220.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 11:36:49 Download gff for BO01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 88..1821 17..1752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:02 Download gff for BO01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 112..1845 17..1752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:36 Download gff for BO01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG10366-RA 112..1845 17..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:36 Download gff for BO01220.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19584346..19584552 17..223 100 -> Plus
2L 19584630..19585915 224..1509 100 -> Plus
2L 19585983..19586223 1510..1752 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:02 Download gff for BO01220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19584346..19584552 17..223 100 -> Plus
arm_2L 19584630..19585915 224..1509 100 -> Plus
arm_2L 19585983..19586223 1510..1752 99   Plus

BO01220.pep Sequence

Translation from 16 to 1768

> BO01220.pep
MAAAQVEMHAAPAAPHVDRNPSSDWRQWCRLCAKDDVQGNLNVFLKNEDS
GEAASMELATAIGKYFWVNITRGEELPETICSECLSLVTSLVNFSERITR
VQKLYCILQSTPSQERPNLHELRSKFGLLDEETQTEVHYVDKKPKLDEQL
EFLPEESPYELANPLTPEEKQESVDQEQDQPTEEPDEQDADYEPNEDRVL
MSLCDVYGIQEDNSSAGSLDGSSPSTEKAGEDAADSEKRHQCNECLRSYA
TSKTLQRHLRQDHGQTEPTTEQLQCPDCPKKFRLHYQLERHMKWHVPLPK
RKQYACSSCDKKFATSASAQQHEQYMHLDERPRPVICEQCGVGVHSMSAL
KEHVLKHTDYAPFECEVCKKCFKSANRLKHHKETHDPHKYICPECGMQLN
SRTTLNRHRLVHTDQMQHKCDYCGREFKRAKALKNHLILHTGLKPYSCDF
CDRTFANGSNCRTHKKKSHPEELAAQEAAGGGRSHNRNIPKLEALKAFTK
NKDNLSPVATKQSGCFAFGKKPRPATKDTPASNPAVIQDAQPEPAPDPGG
ENATQADTPAAAIPTLDNIYNHIMIDYRASFLDH

BO01220.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10366-PA 578 CG10366-PA 1..578 1..578 3140 100 Plus
CG6254-PA 634 CG6254-PA 15..618 22..539 724 30.4 Plus
CG17568-PA 513 CG17568-PA 5..504 23..500 662 30.4 Plus
wek-PB 470 CG4148-PB 4..462 21..500 539 28.7 Plus
wek-PA 470 CG4148-PA 4..462 21..500 539 28.7 Plus