Clone Sequence Records
BO01220.3prime Sequence
824 bp (823 high quality bases) assembled on 2005-11-30
> BO01220.3prime
ATGGTCTAGAAAGCTTGCGCGATAGTCGATCATGATATGGTTATAAATAT
TATCTAACGTGGGTATAGCCGCAGCTGGGGTATCAGCTTGGGTGGCGTTC
TCCCCTCCGGGATCAGGCGCTGGTTCAGGCTGAGCATCTTGGATGACGGC
GGGATTCGAAGCTGGAGTATCCTTGGTGGCTGGCCTCGGTTTTTTGCCGA
AGGCGAAGCAGCCACTCTGTTTGGTGGCCACCGGCGACAGATTGTCCTTG
TTCTTGGTGAATGCCTTGAGCGCCTCCAGCTTGGGTATATTTCTGTTGTG
CGACCTGCCGCCGCCCGCCGCTTCTTGAGCAGCCAGCTCCTCGGGATGCG
ACTTCTTCTTGTGCGTGCGGCAGTTGGAGCCGTTGGCAAAGGTGCGGTCG
CAAAAATCGCAGGAGTAAGGCTTCAGTCCTGTGTGCAGGATGAGGTGATT
CTTCAGCGCCTTGGCGCGCTTAAACTCCCGGCCGCAGTAGTCGCACTTGT
GCTGCATCTGATCCGTGTGCACCAGTCGATGGCGATTCAAGGTGGTCCGC
GAATTCAGCTGCATTCCGCATTCGGGGCAGATGTACTTGTGCGGATCATG
CGTCTCCTTGTGGTGTTTCAGACGATTGGCCGACTTAAAGCACTTCTTGC
ACACCTCGCACTCGAAGGGGGCGTAGTCCGTGTGCTTGAGGACGTGCTCC
TTGAGCGCGCTCATCGAGTGCACACCCACACCGCACTGCTCGCAAATCAC
CGGCCGCGGCCGCTCATCCAGGTGCATGTACTGCTCGTGCTGCTGGGCGG
ATGCACTGGTGGCGAACTTCTTGT
BO01220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-PA | 1737 | CG10366-RA | 929..1734 | 824..19 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-RA | 2062 | CG10366-RA | 1040..1845 | 824..19 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19585351..19585915 | 824..260 | 2825 | 100 | Minus |
2L | 23513712 | 2L | 19585983..19586223 | 259..19 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:43:36 has no hits.
BO01220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:04 Download gff for
BO01220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-PA | 929..1737 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:41 Download gff for
BO01220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-PA | 929..1737 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:17 Download gff for
BO01220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 1040..1845 | 19..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:15 Download gff for
BO01220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 1040..1845 | 19..824 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:15 Download gff for
BO01220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19585351..19585915 | 260..824 | 100 | -> | Minus |
2L | 19585983..19586223 | 19..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:17 Download gff for
BO01220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19585351..19585915 | 260..824 | 100 | -> | Minus |
arm_2L | 19585983..19586223 | 19..259 | 100 | | Minus |
BO01220.complete Sequence
1768 bp assembled on 2008-11-11
GenBank Submission: KX798286
> BO01220.complete
GAAGTTATCAGTCGACATGGCCGCCGCGCAGGTGGAGATGCACGCTGCTC
CGGCGGCTCCCCATGTCGATCGAAATCCCAGCAGCGACTGGCGACAGTGG
TGTCGCCTGTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCCT
CAAGAACGAGGATTCCGGCGAGGCAGCCTCCATGGAACTGGCCACCGCCA
TTGGCAAGTACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAG
ACGATATGCAGTGAGTGCCTGTCGCTGGTCACCTCGCTGGTGAATTTCTC
GGAACGGATTACCCGCGTGCAGAAGCTTTACTGCATCCTGCAGAGCACGC
CCAGCCAGGAGAGGCCAAATCTCCACGAGCTGCGCTCGAAATTTGGTTTG
CTGGACGAGGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCCGAA
GTTGGATGAACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGG
CAAACCCACTAACGCCAGAGGAAAAGCAGGAAAGCGTAGATCAGGAGCAG
GATCAGCCGACGGAGGAGCCAGATGAGCAGGATGCCGACTACGAACCGAA
TGAAGATCGTGTACTAATGAGCCTCTGCGATGTGTATGGCATTCAGGAGG
ATAACTCTTCTGCTGGCAGCTTGGATGGCTCCTCGCCGAGTACCGAAAAA
GCTGGAGAGGATGCAGCAGACTCTGAGAAAAGACACCAGTGCAACGAGTG
CTTGCGAAGCTACGCCACGTCCAAAACCCTGCAGCGCCACCTGCGCCAGG
ATCATGGCCAGACTGAGCCCACAACCGAGCAGCTGCAATGCCCGGATTGC
CCCAAGAAGTTTCGTCTACACTACCAGCTGGAGAGGCACATGAAATGGCA
CGTGCCCCTGCCCAAGCGCAAGCAGTACGCCTGTAGCAGTTGCGACAAGA
AGTTCGCCACCAGTGCATCCGCCCAGCAGCACGAGCAGTACATGCACCTG
GATGAGCGGCCGCGGCCGGTGATTTGCGAGCAGTGCGGTGTGGGTGTGCA
CTCGATGAGCGCGCTCAAGGAGCACGTCCTCAAGCACACGGACTACGCCC
CCTTCGAGTGCGAGGTGTGCAAGAAGTGCTTTAAGTCGGCCAATCGTCTG
AAACACCACAAGGAGACGCATGATCCGCACAAGTACATCTGCCCCGAATG
CGGAATGCAGCTGAATTCGCGGACCACCTTGAATCGCCATCGACTGGTGC
ACACGGATCAGATGCAGCACAAGTGCGACTACTGCGGCCGGGAGTTTAAG
CGCGCCAAGGCGCTGAAGAATCACCTCATCCTGCACACAGGACTGAAGCC
TTACTCCTGCGATTTTTGCGACCGCACCTTTGCCAACGGCTCCAACTGCC
GCACGCACAAGAAGAAGTCGCATCCCGAGGAGCTGGCTGCTCAAGAAGCG
GCGGGCGGCGGCAGGTCGCACAACAGAAATATACCCAAGCTGGAGGCGCT
CAAGGCATTCACCAAGAACAAGGACAATCTGTCGCCGGTGGCCACCAAAC
AGAGTGGCTGCTTCGCCTTCGGCAAAAAACCGAGGCCAGCCACCAAGGAT
ACTCCAGCTTCGAATCCCGCCGTCATCCAAGATGCTCAGCCTGAACCAGC
GCCTGATCCCGGAGGGGAGAACGCCACCCAAGCTGATACCCCAGCTGCGG
CTATACCCACGTTAGATAATATTTATAACCATATCATGATCGACTATCGC
GCAAGCTTTCTAGACCAT
BO01220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-RA | 1737 | CG10366-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-RA | 2062 | CG10366-RA | 112..1845 | 17..1750 | 8670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19584630..19585915 | 224..1509 | 6430 | 100 | Plus |
2L | 23513712 | 2L | 19585983..19586223 | 1510..1750 | 1205 | 100 | Plus |
2L | 23513712 | 2L | 19584346..19584552 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:47 has no hits.
BO01220.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 11:36:49 Download gff for
BO01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 88..1821 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:02 Download gff for
BO01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 112..1845 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:36 Download gff for
BO01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10366-RA | 112..1845 | 17..1752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:36 Download gff for
BO01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19584346..19584552 | 17..223 | 100 | -> | Plus |
2L | 19584630..19585915 | 224..1509 | 100 | -> | Plus |
2L | 19585983..19586223 | 1510..1752 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:02 Download gff for
BO01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19584346..19584552 | 17..223 | 100 | -> | Plus |
arm_2L | 19584630..19585915 | 224..1509 | 100 | -> | Plus |
arm_2L | 19585983..19586223 | 1510..1752 | 99 | | Plus |
BO01220.pep Sequence
Translation from 16 to 1768
> BO01220.pep
MAAAQVEMHAAPAAPHVDRNPSSDWRQWCRLCAKDDVQGNLNVFLKNEDS
GEAASMELATAIGKYFWVNITRGEELPETICSECLSLVTSLVNFSERITR
VQKLYCILQSTPSQERPNLHELRSKFGLLDEETQTEVHYVDKKPKLDEQL
EFLPEESPYELANPLTPEEKQESVDQEQDQPTEEPDEQDADYEPNEDRVL
MSLCDVYGIQEDNSSAGSLDGSSPSTEKAGEDAADSEKRHQCNECLRSYA
TSKTLQRHLRQDHGQTEPTTEQLQCPDCPKKFRLHYQLERHMKWHVPLPK
RKQYACSSCDKKFATSASAQQHEQYMHLDERPRPVICEQCGVGVHSMSAL
KEHVLKHTDYAPFECEVCKKCFKSANRLKHHKETHDPHKYICPECGMQLN
SRTTLNRHRLVHTDQMQHKCDYCGREFKRAKALKNHLILHTGLKPYSCDF
CDRTFANGSNCRTHKKKSHPEELAAQEAAGGGRSHNRNIPKLEALKAFTK
NKDNLSPVATKQSGCFAFGKKPRPATKDTPASNPAVIQDAQPEPAPDPGG
ENATQADTPAAAIPTLDNIYNHIMIDYRASFLDH
BO01220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10366-PA | 578 | CG10366-PA | 1..578 | 1..578 | 3140 | 100 | Plus |
CG6254-PA | 634 | CG6254-PA | 15..618 | 22..539 | 724 | 30.4 | Plus |
CG17568-PA | 513 | CG17568-PA | 5..504 | 23..500 | 662 | 30.4 | Plus |
wek-PB | 470 | CG4148-PB | 4..462 | 21..500 | 539 | 28.7 | Plus |
wek-PA | 470 | CG4148-PA | 4..462 | 21..500 | 539 | 28.7 | Plus |