Clone Sequence Records
BO01228.3prime Sequence
863 bp (802 high quality bases) assembled on 2005-11-30
> BO01228.3prime
ATGGTCTAGAAAGCTTGCGTCCGAGAAGCTATCGCTCCAATAGGTGGTTG
TTGGTGGGGCCACAGCCTTGAAAAGATCCCGTCCTTCGCCGGGACGGCGT
TTGCTGCTGTTGTTGCCATGATGGCGGTCGTCCTTGCTGCGCGACTCCTG
CTTGAACCGCGACTGCTCCTCCTTGATGCGAACGCTATCCTCCTTGTGCC
GCTGACAACCGACGGCCTGGTGACGCTGCAGTCGCTGCTGGGTGAGGAAC
GTCCGCTGGCAGCGCTTGCACTCGTAAATGAAGCCATGCTCGTCGTGTCG
CTGGGCCATATGGTGCTTCAGTTCCGCGCGCAGTCGGAATATCTTGGGGC
ACAGCTCGCAGCGGAAATGGGCGCGCTCCTGCTCGTGCCGTTGCATGTGC
GTTTTATAGGCCCACTCCACCTTGAACTTCTTGCCGCAGATGGGACAGGC
ATGCTCTATTCTCTCGTGAGTCTTACGATGCAGCACATAGGATTGTTTGC
GCGAGAACGTCAAGTCGCAGTTGGGACACTCGAATGGGCCCACTGAAGCC
GTCGAAGAGGGCTGGTATTTCTTCTTTTGGGCGCTGGAAGGCTCCCCATC
GCTGTCCGTGCCTCTCTTGAGTGGCTTTTTTCGAGGACGCCCACGTGGTC
CGGGCTTCTTTTTCTCCTTCTCACTGTCATCCGAATCGGCAGAATCGCTG
TCGGCACTCGTGGTTCCGGCTACATCGGATACCTTGAACTCATCATCGAG
CTCATCCTCATCCTCACTGGGATCGGTGACAGGTGCGTCTATGACCACAT
AGCCGCGGGGTCTTCGCACTTTATTCTTGCTTCGGGACAAACGCTTGCGC
AGCTCCTGGTCCG
BO01228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12391-PA | 1764 | CG12391-RA | 917..1761 | 863..19 | 4200 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12391-RA | 2378 | CG12391-RA | 1208..2052 | 863..19 | 4210 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11147928..11148772 | 19..863 | 4210 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 15:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3757..3810 | 156..103 | 108 | 66.7 | Minus |
BO01228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:11 Download gff for
BO01228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-PA | 917..1764 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:51 Download gff for
BO01228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-PA | 917..1764 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:32 Download gff for
BO01228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 1208..2055 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:40 Download gff for
BO01228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 1208..2055 | 15..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:40 Download gff for
BO01228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11147924..11148772 | 15..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:32 Download gff for
BO01228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7035429..7036277 | 15..863 | 99 | | Plus |
BO01228.5prime Sequence
779 bp (706 high quality bases) assembled on 2005-11-30
> BO01228.5prime
GAAGTTATCAGTCGACATGGAAGCCGACATAACGCCCCTGGCGGAAACCA
ACGGAGAGCAGCGCCAAAATCCCCAGGAAAGTGCTCAAAACCAAGAGCAA
CCGCAACCGCGGCAGGATTTGGCGGGCAAGTCGGTGGGTTCCGCTGATGA
TGGCGTCTCCGGAACTGTGGGACAGATTATGGATTACCTCGAGGACGATG
CCGGTGCAACTGCCGACCAGGACGCGGAGATGGGCGAGGCAGAGTATCTG
GATGGCGAGATGCCGCAGGAGGATGAGAGCGAGACTCCGCAAACGGAGAA
AGCCAATGAAGGTTGCCAGGAATCAAGCAATAAGAAGGATTTGCAAGAAT
CTGCAGCTAAAGATGATTTTTCCAAGGAAAAAAGTGGAGAGGATGGTGAA
AAAGACACCGACAAGGAGAAGAAGGCAACTCATTTACATGAAGATAACAA
CGATGATGCCGAAAAGGATGGCGACGAGGCCGACGCAGAGGATGAAGACG
ATGTAGAGAAGCCAGAAGATGAGGATGGCACCGAAGAAGGCGACGAGGCC
ATTGAAGAAGATGAGGACGCTCTCGATGAAGATGAGGATCCCAACGAAGA
AGTCGAGGAAATTGAACCAGATTTCGAGACTGGCACCGATGCAGAAGGTG
AACTAATCACTGGCGATGAGCCGGGCGATCTGGCCGATGTGCCCATTAGG
GAGCGCAAGAAAGAGGAACCCGTGGACGAAGACCAGTGCCGCGTTTGCAC
CAGCAAGGAAGAGCTAGTCTGCCTGTTTA
BO01228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12391-PA | 1764 | CG12391-RA | 1..763 | 17..779 | 3815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12391-RA | 2378 | CG12391-RA | 292..1054 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11148926..11149513 | 779..192 | 2940 | 100 | Minus |
| 2R | 25286936 | 2R | 11149600..11149777 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:46:38 has no hits.
BO01228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:12 Download gff for
BO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:52 Download gff for
BO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:43 Download gff for
BO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 292..1053 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:20 Download gff for
BO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 292..1053 | 17..778 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:20 Download gff for
BO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11148927..11149511 | 194..778 | 100 | <- | Minus |
| 2R | 11149601..11149777 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:43 Download gff for
BO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7036432..7037016 | 194..778 | 100 | <- | Minus |
| arm_2R | 7037106..7037282 | 17..193 | 100 | | Minus |
BO01228.complete Sequence
1795 bp (1795 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629452
> BO01228.complete
GAAGTTATCAGTCGACATGGAAGCCGACATAACGCCCCTGGCGGAAACCA
ACGGAGAGCAGCGCCAAAATCCCCAGGAAAGTGCTCAAAACCAAGAGCAA
CCGCAACCGCGGCAGGATTTGGCGGGCAAGTCGGTGGGTTCCGCTGATGA
TGGCGTCTCCGGAACTGTGGGACAGATTATGGATTACCTCGAGGACGATG
CCGGTGCAACTGCCGACCAGGACGCGGAGATGGGCGAGGCAGAGTATCTG
GATGGCGAGATGCCGCAGGAGGATGAGAGCGAGACTCCGCAAACGGAGAA
AGCCAATGAAGGTTGCCAGGAATCAAGCAATAAGAAGGATTTGCAAGAAT
CTGCAGCTAAAGATGATTTTTCCAAGGAAAAAAGTGGAGAGGATGGTGAA
AAAGACACCGACAAGGAGAAGAAGGCAACTCATTTACATGAAGATAACAA
CGATGATGCCGAAAAGGATGGCGACGAGGCCGACGCAGAGGATGAAGACG
ATGTAGAGAAGCCAGAAGATGAGGATGGCACCGAAGAAGGCGACGAGGCC
ATTGAAGAAGATGAGGACGCTCTCGATGAAGATGAGGATCCCAACGAAGA
AGTCGAGGAAATTGAACCAGATTTCGAGACTGGCACCGATGCAGAAGGTG
AACTAATCACTGGCGATGAGCCGGGCGATCTGGCCGATGTGCCCATTAGG
GAGCGCAAGAAAGAGGAACCCGTGGACGAAGACCAGTGCCGCGTTTGCAC
CAGCAAGGAAGAGCTAGTCTGCCTGTTTAAGAAGCAAATCGATGCCACGC
CCGCGGACATGCTGCTGGTCATCTGTCCTAATGTCTCGATTTTGCCCAAG
GACTTTATGCCGCAATTCATATGCACCAAGTGCATGGGCAGCCTTACCAT
TGCCATACAGCTGAGAAAGCAGCTGGAGACCACGGACCAGGAGCTGCGCA
AGCGTTTGTCCCGAAGCAAGAATAAAGTGCGAAGACCCCGCGGCTATGTG
GTCATAGACGCACCTGTCACCGATTCCAGTGAGGATGAGGATGAGCTCGA
TGATGAGTTCAAGGTATCCGATGTAGCCGGAACCACGAGTGCCGACAGCG
ATTCTGCCGATTCGGATGACAGTGAGAAGGAGAAAAAGAAGCCCGGACCA
CGTGGGCGTCCTCGAAAAAAGCCACTCAAGAGAGGCACGGACAGCGATGG
GGAGCCTTCCAGCGCCCAAAAGAAGAAATACCAGCCCTCTTCGACGGCTT
CAGTGGGCCCATTCGAGTGTCCCAACTGCGACTTGACGTTCTCGCGCAAA
CAATCCTATGTGCTGCATCGTAAGACTCACGAGAGAATAGAGCATGCCTG
TCCCATCTGCGGCAAGAAGTTCAAGGTGGAGTGGGCCTATAAAACGCACA
TGCAACGGCACGAGCAGGAGCGCGCCCATTTCCGCTGCGAGCTGTGCCCC
AAGATATTCCGACTGCGCGCGGAACTGAAGCACCATATGGCCCAGCGACA
CGACGAGCATGGCTTCATTTACGAGTGCAAGCGCTGCCAGCGGACGTTCC
TCACCCAGCAGCGACTGCAGCGTCACCAGGCCGTCGGTTGTCAGCGGCAC
AAGGAGGATAGCGTTCGCATCAAGGAGGAGCAGTCGCGGTTCAAGCAGGA
GTCGCGCAGCAAGGACGACCGCCATCATGGCAACAACAGCAGCAAACGCC
GTCCCGGCGAAGGACGGGATCTTTTCAAGGCTGTGGCCCCACCAACAACC
ACCTATTGGAGCGATAGCTTCTCGGACGCAAGCTTTCTAGACCAT
BO01228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12391-RA | 1764 | CG12391-PA | 1..1761 | 17..1777 | 8805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12391-RA | 2378 | CG12391-RA | 292..2052 | 17..1777 | 8805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11147928..11149513 | 1777..192 | 7930 | 100 | Minus |
| 2R | 25286936 | 2R | 11149600..11149777 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:55:11 has no hits.
BO01228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:23 Download gff for
BO01228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 1..1764 | 17..1781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:44 Download gff for
BO01228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 280..2043 | 17..1781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:47 Download gff for
BO01228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 292..2052 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:23 Download gff for
BO01228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 280..2043 | 17..1781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:53 Download gff for
BO01228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12391-RA | 292..2052 | 17..1779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:53 Download gff for
BO01228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11147926..11149511 | 194..1779 | 99 | <- | Minus |
| 2R | 11149601..11149777 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:47 Download gff for
BO01228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7037106..7037282 | 17..193 | 100 | | Minus |
| arm_2R | 7035431..7037016 | 194..1779 | 99 | <- | Minus |
BO01228.pep Sequence
Translation from 16 to 1795
> BO01228.pep
MEADITPLAETNGEQRQNPQESAQNQEQPQPRQDLAGKSVGSADDGVSGT
VGQIMDYLEDDAGATADQDAEMGEAEYLDGEMPQEDESETPQTEKANEGC
QESSNKKDLQESAAKDDFSKEKSGEDGEKDTDKEKKATHLHEDNNDDAEK
DGDEADAEDEDDVEKPEDEDGTEEGDEAIEEDEDALDEDEDPNEEVEEIE
PDFETGTDAEGELITGDEPGDLADVPIRERKKEEPVDEDQCRVCTSKEEL
VCLFKKQIDATPADMLLVICPNVSILPKDFMPQFICTKCMGSLTIAIQLR
KQLETTDQELRKRLSRSKNKVRRPRGYVVIDAPVTDSSEDEDELDDEFKV
SDVAGTTSADSDSADSDDSEKEKKKPGPRGRPRKKPLKRGTDSDGEPSSA
QKKKYQPSSTASVGPFECPNCDLTFSRKQSYVLHRKTHERIEHACPICGK
KFKVEWAYKTHMQRHEQERAHFRCELCPKIFRLRAELKHHMAQRHDEHGF
IYECKRCQRTFLTQQRLQRHQAVGCQRHKEDSVRIKEEQSRFKQESRSKD
DRHHGNNSSKRRPGEGRDLFKAVAPPTTTYWSDSFSDASFLDH
BO01228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12391-PA | 587 | CG12391-PA | 1..587 | 1..587 | 3118 | 100 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 763..1160 | 12..412 | 211 | 22.8 | Plus |
| CG8301-PA | 607 | CG8301-PA | 49..325 | 272..522 | 205 | 24.2 | Plus |
| CG44002-PA | 345 | CG44002-PA | 2..344 | 238..535 | 193 | 23.3 | Plus |
| Sry-beta-PB | 356 | CG7938-PB | 230..355 | 417..542 | 193 | 29.9 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 729..905 | 58..240 | 176 | 26.6 | Plus |
| CG8301-PA | 607 | CG8301-PA | 477..581 | 415..520 | 176 | 32.7 | Plus |
| CG8301-PA | 607 | CG8301-PA | 426..554 | 395..521 | 166 | 31.3 | Plus |
