Clone Sequence Records
BO01232.3prime Sequence
851 bp (768 high quality bases) assembled on 2005-11-30
> BO01232.3prime
ATGGTCTAGAAAGCTTGCCAGCACCATCACCACTTTGGAGGTGGACACCG
GCTGCTCATGAACTTCGGTTATGTGAAGGTTGGTTGCCGATCCACCGGTC
GCACCTCCACCGGTCGGACTTCCACCTGTCGCACCTCCGCCTGTCGCACC
TTCTGCGCCCGCTTGTCGGCTGGGAGGATTGATGGACTGAACAGCAACGG
TGGCCGTCACCGGCGACTCCTTGTTGTGGACGCGCATATGACTGGCCAGT
CGCTTCTTTGTGGGAAAGGCCTTAACGCAGACCTCGCACTTAAACGGCTT
TTCGCCGGAATGGAGGCGAACATGGGCATTGAGGTTGCTGGTAAAGGTGA
AGGCATGCCCGCAAACATCACACTTGTGCGCCTTGACGCCACTGTGGACC
ATCATGTGCTTCTTGTAGCCCGACTTCTGAGACAGTCCCACGCCGCAGAT
CTCGCAGGTGAAAGCCTTCTTGCCGGTGTGGCTTATCTTGTGCTGGCGCA
GCGAGGACGAATCGTAGTAGGCCTTGTCGCACAGATCGCAGGCGTATGGT
CGCTCGCCCGTGTGCGTGAGCTTGTGGCGCCGCAGATGATCGAACGCCGC
ATATCCGCGGCCGCACTGATCGCAGTTGTAGGGTTTCTTCTCCGCATGAG
TTCTCTTGTGCACTGCCAGACTGGAGGTGGTACGATAGAAGCGGCCGCAT
ATGCTGCACTGGTGCGGCTTGACATTTGTGTGTGTCAGCATGTGTTCCTT
GTAGTTGCGTANGTGCTTCAGACGCTTGCCACACTCCTCGCACTCGTATT
GCTTCTCGTCCACGTGGGAGCGCATGTGCTGGTTGAGACGGCACTGCTGG
C
BO01232.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2711-PA | 1779 | dwg-RA | 944..1776 | 851..19 | 4146 | 99.8 | Minus |
| CG2712-PA | 1506 | CG2712-RA | 1135..1161 | 429..403 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 2002 | CG2711-RA | 1078..1910 | 851..19 | 4154 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2729118..2729950 | 851..19 | 4154 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:43:43 has no hits.
BO01232.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:18 Download gff for
BO01232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-PA | 944..1779 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:02 Download gff for
BO01232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-PA | 944..1779 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:18 Download gff for
BO01232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 1078..1915 | 13..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:49 Download gff for
BO01232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 1078..1915 | 13..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:49 Download gff for
BO01232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2729118..2729955 | 13..851 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:18 Download gff for
BO01232.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2623151..2623988 | 13..851 | 99 | | Minus |
BO01232.5prime Sequence
896 bp (779 high quality bases) assembled on 2005-11-30
> BO01232.5prime
GAAGTTATCAGTCGACATGATGAATAGCAAGATCGCCGAGGTAGTGGTGC
TCAACTGCCGGACGTGCACGCGTGCCTGCAAGCTGCACAAGCCGCTGCAG
GAGGAGATCGATCTGGGTTCGGAGGGCAGCACCACGCTGGCCAGCATGCT
AAACTACTGCACGGGACTCTCGTTCGAGCCGCAAGACGGCGCCGCCATGC
CGCAGCACATCTGCCTCCACTGCCTGCAGCTGCTGGAACAGGCGTTCAAC
TTCAAGCGCATGGTCATCGATTCGGACGAGCTGCTCCGCCTGGGCCTGGA
CGAGGCGCGCTGCTCCAGCTTTCACGAGAGTCAGACTCATAGCCCCAACC
AGAGCCAGCAGCACGACCAGCAACAGCAGGCGTTCGACTCCACCGAGGAG
TACGTCATGATCGAGATGCTCAACGAGGAGCAGGAGAACGTCGCCAATTT
GGATGAAGAACTAGCAGAGGAGGATCGTCGCATCTTCGCGATGACCGTGG
ATGAGGAGGAGGAGTTTCTCACCGAGGAGGTGGATCAGGATGACGAGCTG
TCGGAGGAGGAGCACCAGCTGGCACAGTCGGGCGACCAGCAGGAGGAACA
CATCACTATGGAGAGCGTGCATGAGTTTCAGCCCGCCGAAGTGGAGTATG
TGACCATTAAGAATGAGTTCGAAACGATCGTCACGGAGGAGGATGAGTTC
GAGGTGATGAACGACTCCGGCGCCCACGACGCCATACTGGACTGTCAGAT
GATTGTGATACCCGCCGAGGGAGCCATTGACGAGGTCATCGGCGAGGAGA
CCCTCGAATTGGAGGGGGATGGGCGCGAGGAGCATCTGCTGCCGGAGGCG
GAGGATGTCTGCGAAGATGAGGACTTCCTGGAGGAGTCGCTGGACT
BO01232.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2711-PA | 1779 | dwg-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 2002 | CG2711-RA | 134..1014 | 16..896 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2727831..2728263 | 16..448 | 2165 | 100 | Plus |
| X | 23542271 | X | 2728545..2728934 | 449..838 | 1950 | 100 | Plus |
| X | 23542271 | X | 2728996..2729054 | 838..896 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:11:57 has no hits.
BO01232.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:19 Download gff for
BO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:04 Download gff for
BO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:48 Download gff for
BO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 134..1014 | 16..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:29 Download gff for
BO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 134..1014 | 16..896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:29 Download gff for
BO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2727831..2728263 | 16..448 | 100 | -> | Plus |
| X | 2728545..2728934 | 449..838 | 100 | -> | Plus |
| X | 2728997..2729054 | 839..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:48 Download gff for
BO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2621864..2622296 | 16..448 | 100 | -> | Plus |
| arm_X | 2622578..2622967 | 449..838 | 100 | -> | Plus |
| arm_X | 2623030..2623087 | 839..896 | 100 | | Plus |
BO01232.complete Sequence
1810 bp (1810 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629453
> BO01232.complete
GAAGTTATCAGTCGACATGATGAATAGCAAGATCGCCGAGGTAGTGGTGC
TCAACTGCCGGACGTGCACGCGTGCCTGCAAGCTGCACAAGCCGCTGCAG
GAGGAGATCGATCTGGGTTCGGAGGGCAGCACCACGCTGGCCAGCATGCT
AAACTACTGCACGGGACTCTCGTTCGAGCCGCAAGACGGCGCCGCCATGC
CGCAGCACATCTGCCTCCACTGCCTGCAGCTGCTGGAACAGGCGTTCAAC
TTCAAGCGCATGGTCATCGATTCGGACGAGCTGCTCCGCCTGGGCCTGGA
CGAGGCGCGCTGCTCCAGCTTTCACGAGAGTCAGACTCATAGCCCCAACC
AGAGCCAGCAGCACGACCAGCAACAGCAGGCGTTCGACTCCACCGAGGAG
TACGTCATGATCGAGATGCTCAACGAGGAGCAGGAGAACGTCGCCAATTT
GGATGAAGAACTAGCAGAGGAGGATCGTCGCATCTTCGCGATGACCGTGG
ATGAGGAGGAGGAGTTTCTCACCGAGGAGGTGGATCAGGATGACGAGCTG
TCGGAGGAGGAGCACCAGCTGGCACAGTCGGGCGACCAGCAGGAGGAACA
CATCACTATGGAGAGCGTGCATGAGTTTCAGCCCGCCGAAGTGGAGTATG
TGACCATTAAGAATGAGTTCGAAACGATCGTCACGGAGGAGGATGAGTTC
GAGGTGATGAACGACTCCGGCGCCCACGACGCCATACTGGACTGTCAGAT
GATTGTGATACCCGCCGAGGGAGCCATTGACGAGGTCATCGGCGAGGAGA
CCCTCGAATTGGAGGGGGATGGGCGCGAGGAGCATCTGCTGCCGGAGGCG
GAGGATGTCTGCGAAGATGAGGACTTCCTGGAGGAGTCGCTGGACTCAGC
GCCGCCGACCGCTGGCGAGGCGCTGCCGTACGTGTGCACCGTGTGCCAGA
AGGCGTTCCGCCAGCAGTGCCGTCTCAACCAGCACATGCGCTCCCACGTG
GACGAGAAGCAATACGAGTGCGAGGAGTGTGGCAAGCGTCTGAAGCACCT
ACGCAACTACAAGGAACACATGCTGACACACACAAATGTCAAGCCGCACC
AGTGCAGCATATGCGGCCGCTTCTATCGTACCACCTCCAGTCTGGCAGTG
CACAAGAGAACTCATGCGGAGAAGAAACCCTACAACTGCGATCAGTGCGG
CCGCGGATATGCGGCGTTCGATCATCTGCGGCGCCACAAGCTCACGCACA
CGGGCGAGCGACCATACGCCTGCGATCTGTGCGACAAGGCCTACTACGAT
TCGTCCTCGCTGCGCCAGCACAAGATAAGCCACACCGGCAAGAAGGCTTT
CACCTGCGAGATCTGCGGCGTGGGACTGTCTCAGAAGTCGGGCTACAAGA
AGCACATGATGGTCCACAGTGGCGTCAAGGCGCACAAGTGTGATGTTTGC
GGGCATGCCTTCACCTTTACCAGCAACCTCAATGCCCATGTTCGCCTCCA
TTCCGGCGAAAAGCCGTTTAAGTGCGAGGTCTGCGTTAAGGCCTTTCCCA
CAAAGAAGCGACTGGCCAGTCATATGCGCGTCCACAACAAGGAGTCGCCG
GTGACGGCCACCGTTGCTGTTCAGTCCATCAATCCTCCCAGCCGACAAGC
GGGCGCAGAAGGTGCGACAGGCGGAGGTGCGACAGGTGGAAGTCCGACCG
GTGGAGGTGCGACCGGTGGATCGGCAACCAACCTTCACATAACCGAAGTT
CATGAGCAGCCGGTGTCCACCTCCAAAGTGGTGATGGTGCTGGCAAGCTT
TCTAGACCAT
BO01232.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 1779 | CG2711-PA | 1..1776 | 17..1792 | 8880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 2002 | CG2711-RA | 134..1910 | 16..1792 | 8885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2728996..2729950 | 838..1792 | 4775 | 100 | Plus |
| X | 23542271 | X | 2727831..2728263 | 16..448 | 2165 | 100 | Plus |
| X | 23542271 | X | 2728545..2728934 | 449..838 | 1950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:46:17 has no hits.
BO01232.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:11 Download gff for
BO01232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 1..1779 | 17..1795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:33 Download gff for
BO01232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 132..1913 | 16..1798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:20 Download gff for
BO01232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 135..1910 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:11 Download gff for
BO01232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 132..1913 | 16..1798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:53 Download gff for
BO01232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 135..1910 | 17..1794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:53 Download gff for
BO01232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2727832..2728263 | 17..448 | 100 | -> | Plus |
| X | 2728545..2728934 | 449..838 | 100 | -> | Plus |
| X | 2728997..2729950 | 839..1794 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:20 Download gff for
BO01232.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2621865..2622296 | 17..448 | 100 | -> | Plus |
| arm_X | 2622578..2622967 | 449..838 | 100 | -> | Plus |
| arm_X | 2623030..2623983 | 839..1794 | 99 | | Plus |
BO01232.pep Sequence
Translation from 16 to 1810
> BO01232.pep
MMNSKIAEVVVLNCRTCTRACKLHKPLQEEIDLGSEGSTTLASMLNYCTG
LSFEPQDGAAMPQHICLHCLQLLEQAFNFKRMVIDSDELLRLGLDEARCS
SFHESQTHSPNQSQQHDQQQQAFDSTEEYVMIEMLNEEQENVANLDEELA
EEDRRIFAMTVDEEEEFLTEEVDQDDELSEEEHQLAQSGDQQEEHITMES
VHEFQPAEVEYVTIKNEFETIVTEEDEFEVMNDSGAHDAILDCQMIVIPA
EGAIDEVIGEETLELEGDGREEHLLPEAEDVCEDEDFLEESLDSAPPTAG
EALPYVCTVCQKAFRQQCRLNQHMRSHVDEKQYECEECGKRLKHLRNYKE
HMLTHTNVKPHQCSICGRFYRTTSSLAVHKRTHAEKKPYNCDQCGRGYAA
FDHLRRHKLTHTGERPYACDLCDKAYYDSSSLRQHKISHTGKKAFTCEIC
GVGLSQKSGYKKHMMVHSGVKAHKCDVCGHAFTFTSNLNAHVRLHSGEKP
FKCEVCVKAFPTKKRLASHMRVHNKESPVTATVAVQSINPPSRQAGAEGA
TGGGATGGSPTGGGATGGSATNLHITEVHEQPVSTSKVVMVLASFLDH
BO01232.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-PA | 592 | CG2711-PA | 1..592 | 1..592 | 3156 | 100 | Plus |
| Meics-PB | 571 | CG8474-PB | 63..516 | 61..530 | 492 | 25.7 | Plus |
| Meics-PA | 583 | CG8474-PA | 63..528 | 61..530 | 488 | 26.3 | Plus |
| crol-PB | 891 | CG14938-PB | 304..556 | 276..528 | 477 | 34 | Plus |
| crol-PI | 962 | CG14938-PI | 304..556 | 276..528 | 477 | 34 | Plus |
| crol-PB | 891 | CG14938-PB | 304..537 | 304..537 | 475 | 33.8 | Plus |
| crol-PB | 891 | CG14938-PB | 277..509 | 305..537 | 465 | 33.5 | Plus |
| crol-PB | 891 | CG14938-PB | 388..612 | 304..528 | 465 | 35.6 | Plus |
| crol-PB | 891 | CG14938-PB | 212..444 | 293..528 | 422 | 32.6 | Plus |
| crol-PB | 891 | CG14938-PB | 444..712 | 304..565 | 399 | 30.5 | Plus |
| Meics-PB | 571 | CG8474-PB | 368..571 | 301..499 | 367 | 35.1 | Plus |
| Meics-PA | 583 | CG8474-PA | 380..583 | 301..499 | 367 | 35.1 | Plus |
| crol-PB | 891 | CG14938-PB | 223..427 | 335..539 | 358 | 31.2 | Plus |
