Clone Sequence Records
BO01233.3prime Sequence
830 bp (820 high quality bases) assembled on 2005-11-30
> BO01233.3prime
ATGGTCTAGAAAGCTTGCAGGCTGAGGGAATGTCTTTGTAAAGAGTGCGT
CGCTTGACGACAGAGAGCTCTTGAGGATCTTGTGGGTGCGTCGCATGTGG
ACGCCCAGACTAACTCGCTCCGAGAAGCGCGTCGTGCAGAGCGAACATTG
CAGGGTCTTCTCCTTGTGGATGTGGCGATGCTTGACTAAGGCGTTGGCAT
TGGTGAAGGCCTTCTGACAGACCTCGCAGACCTTGTCGCGGATGTTCAGG
TGCGCCTTTACGTGGTCCTTGAGGTCGCGCTTGGTCAGGAAGTCCTTGGG
GCACATGTCGCACTTGAAGGCTCGGATCTTGGTGTGAACCGCAGTTACGT
GCGTTGTCATTTGGATTTTTTGCTTAAAACACTTGCCGCAGAACTCGCAG
ACAAATGGCTTGGCGACGTGCTTCTCGTCATGGGTGCGTTTGTGGATAGC
CAGTTGATTTCCAAAGGCAAAGCTCCTGCTGCAGATCTCGCAGACAAAGC
TCTTGTCCATGTGCACACGCTGGCTGTGCTGCTGCAGGTGACACTTTCGG
TCGAAGTTCAGCTCGCAAAGCGTGCAGCGAAACCAGCCTCCATCGCCCAT
CTTATGATCCCGGAACTGATGTGCTTGCAGGGCGTGATCTGTGCTAAAGG
AGTGCTCGCAGACTTCACATTTAAGCTTCTGTCGGAATGATTTAGTGGGC
ATAAAGCTATTGCAGCGCTCGATGTACTGCTTCTCGGCCAGCGAGAGACC
CACACATTGGACGTCTGTGAGGGTTTTGATCCGTCGCGAATACCATTGGC
GCATGCTCTGAATACTGTCGTAGACATCGT
BO01233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1605-PA | 1782 | az2-RA | 968..1779 | 830..19 | 4035 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 1022..1833 | 830..19 | 4045 | 99.9 | Minus |
| CG1602-RA | 1901 | CG1602-RA | 1468..1606 | 364..226 | 185 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7510795..7511606 | 19..830 | 4045 | 99.9 | Plus |
| 2R | 25286936 | 2R | 7517218..7517356 | 226..364 | 185 | 75.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:43:50 has no hits.
BO01233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:20 Download gff for
BO01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-PA | 968..1782 | 16..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:05 Download gff for
BO01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1605-PA | 968..1782 | 16..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:19 Download gff for
BO01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 1022..1833 | 19..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:16 Download gff for
BO01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 1022..1833 | 19..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:16 Download gff for
BO01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7510795..7511606 | 19..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:19 Download gff for
BO01233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3398300..3399111 | 19..830 | 99 | | Plus |
BO01233.5prime Sequence
915 bp (825 high quality bases) assembled on 2005-11-30
> BO01233.5prime
GAAGTTATCAGTCGACATGGAGTTCAAGCGGTGGCGAGAGTTCATCGTGC
ACGTCAAGGAGCACCTGGAAGCAAATCCAAGCATGCAGCAAGAGCTCACT
ACTTCCGAAGTCATTTCGTCAGCCAAATGCGAGGAGGAGGTCTCGCCAGC
CAAGGTGTTCATAGTGGAGGAGCCTCCGGAAAATTGCCTGGCTGAAGACA
TGTTCGTTGACGTGCCACCTTCATCAGAGAACGACGAGAGCACCAGCCCG
GTGGAGGAGGAGGAGGAAGAAGACGACGAGGTGGACTCCTCCTCGATGAC
AGTTGACTGCGAATTGGGCACCAGAAACTCCACACACTTTGCTCCTTTAA
CCAAATTCAATCCTACGTTTTACCGACGCAGTCCTCGGATCACACAGTTC
ATTGAACTGTATAAGCAGCAGACATGCCTCTGGGATCCAGCGGATGAGTC
GTACAGGGACAAGGAGAAACGCGCAAATGCCTATGAGGAGTTGCTGGAGC
AATTAAAGGCGACCGTCAATCTTCACCTAACGGCCTATAAGCTGAAGAAG
TGCATCACCAGCCTACACGCGCAGTATGCGTCGATCTCGCGGCAGAAGAA
AACTCAGAAACTAACCAAGGTTCCACTGTACTACCATGGAAAGTACAGCT
TTCTGGCAGAGCGCGGTAGTCTGGAGGATGCGGACAGCGATGATGTCGAC
GGCGATGGCAAAATAAAGCTGGTGTTCACAGAGGAGAATCAACTGACCAC
ACAGTTCATTGATTTGTACTCCAAGTTTCCCCAACTGTACGATCCCGCGC
ACAAGCACTTCTGCAATCTAAACGTACGAAAGTCATCGCTCATAGAGATC
ACTGACCTGCTGACTTCGGAGTTTTCGTTGGGCCTGGTCACCCACTACGA
TGTCTACGACAGTAT
BO01233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1605-PA | 1782 | az2-RA | 88..986 | 17..915 | 4495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 142..1040 | 17..915 | 4495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7511841..7512203 | 718..356 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 7512270..7512608 | 355..17 | 1695 | 100 | Minus |
| 2R | 25286936 | 2R | 7511588..7511786 | 915..717 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:43:57 has no hits.
BO01233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:21 Download gff for
BO01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-PA | 79..986 | 6..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:07 Download gff for
BO01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1605-PA | 79..986 | 6..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:21 Download gff for
BO01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 133..1040 | 6..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:44 Download gff for
BO01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 133..1040 | 6..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:44 Download gff for
BO01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7511588..7511784 | 719..915 | 100 | <- | Minus |
| 2R | 7511841..7512203 | 356..718 | 100 | <- | Minus |
| 2R | 7512270..7512617 | 6..355 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:21 Download gff for
BO01233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3399093..3399289 | 719..915 | 100 | <- | Minus |
| arm_2R | 3399346..3399708 | 356..718 | 100 | <- | Minus |
| arm_2R | 3399775..3400122 | 6..355 | 98 | | Minus |
BO01233.complete Sequence
1726 bp assembled on 2008-08-15
> BO01233.complete
GAAGTTATCAGTCGACATGGAGTTCAAGCGGTGGCGAGAGTTCATCGTGC
ACGTCAAGGAGCACCTGGAAGCAAATCCAAGCATGCAGCAAGAGCTCACT
ACTTCCGAAGTCATTTCGTCAGCCAAATGCGAGGAGGAGGTCTCGCCAGC
CAAGGTGTTCATAGTGGAGGAGCCTCCGGAAAATTGCCTGGCTGAAGACA
TGTTCGTTGACGTGCCACCTTCATCAGAGAACGACGAGAGCACCAGCCCG
GTGGAGGAGGAGGAGGAAGAAGACGACGAGGTGGACTCCTCCTCGATGAC
AGTTGACTGCGAATTGGGCACCAGAAACTCCACACACTTTGCTCCTTTAA
CCAAATTCAATCCTACGTTTTACCGACGCAGTCCTCGGATCACACAGTTC
ATTGAACTGTATAAGCAGCAGACATGCCTCTGGGATCCAGCGGATGAGTC
GTACAGGGACAAGGAGAAACGCGCAAATGCCTATGAGGAGTTGCTGGAGC
AATTAAAGGCGACCGTCAATCTTCACCTAACGGCCTATAAGCTGAAGAAG
TGCATCACCAGCCTACACGCGCAGTATGCGTCGATCTCGCGGCAGAAGAA
AACTCAGAAACTAACCAAGGTTCCACTGTACTACCATGGAAAGTACAGCT
TTCTGGCAGAGCGCGGTAGTCTGGAGGATGCGGACAGCGATGATGTCGAC
GGCGATGGCAAAATAAAGCTGGTGTTCACAGAGGAGAATCAACTGACCAC
ACAGTTCATTGATTTGTACTCCAAGTTTCCCCAACTGTACGATCCCGCGC
ACAAGCACTTCTGCAATCTAAACGTACGAAAGTCATCGCTCATAGAGATC
ACTGACCTGCTGACTTCGGAGTTTTCGTTGGGCCTGGTCACCCACTACGA
TGTCTACGACAGTATTCAGAGCATGCGCCAATGGTATTCGCGACGGATCA
AAACCCTCACAGACGTCCAATGTGTGGGTCTCTCGCTGGCCGAGAAGCAG
TACATCGAGCGCTGCAATAGCTTTATGCCCACTAAATCATTCCGACAGAA
GCTTAAATGTGAAGTCTGCGAGCACTCCTTTAGCACAGATCACGCCCTGC
AAGCACATCAGTTCCGGGATCATAAGATGGGCGATGGAGGCTGGTTTCGC
TGCACGCTTTGCGAGCTGAACTTCGACCGAAAGTGTCACCTGCAGCAGCA
CAGCCAGCGTGTGCACATGGACAAGAGCTTTGTCTGCGAGATCTGCAGCA
GGAGCTTTGCCTTTGGAAATCAACTGGCTATCCACAAACGCACCCATGAC
GAGAAGCACGTCGCCAAGCCATTTGTCTGCGAGTTCTGCGGCAAGTGTTT
TAAGCAAAAAATCCAAATGACAACGCACGTAACTGCGGTTCACACCAAGA
TCCGAGCCTTCAAGTGCGACATGTGCCCCAAGGACTTCCTGACCAAGCGC
GACCTCAAGGACCACGTAAAGGCGCACCTGAACATCCGCGACAAGGTCTG
CGAGGTCTGTCAGAAGGCCTTCACCAATGCCAACGCCTTAGTCAAGCATC
GCCACATCCACAAGGAGAAGACCCTGCAATGTTCGCTCTGCACGACGCGC
TTCTCGGAGCGAGTTAGTCTGGGCGTCCACATGCGACGCACCCACAAGAT
CCTCAAGAGCTCTCTGTCGTCAAGCGACGCACTCTTTACAAAGACATTCC
CTCAGCCTGCAAGCTTTCTAGACCAT
BO01233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 1782 | CG1605-PA | 88..1779 | 17..1708 | 8445 | 99.9 | Plus |
| CG1602-RA | 1734 | CG1602-PA | 1392..1530 | 1363..1501 | 185 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 142..1833 | 17..1708 | 8445 | 99.9 | Plus |
| CG1602-RA | 1901 | CG1602-RA | 1468..1606 | 1363..1501 | 185 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7510795..7511786 | 1708..717 | 4945 | 99.9 | Minus |
| 2R | 25286936 | 2R | 7511841..7512203 | 718..356 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 7512270..7512608 | 355..17 | 1695 | 100 | Minus |
| 2R | 25286936 | 2R | 7517218..7517356 | 1501..1363 | 185 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:29:32 has no hits.
BO01233.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:07 Download gff for
BO01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 108..1808 | 6..1708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:46 Download gff for
BO01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 142..1833 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:21 Download gff for
BO01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 117..1808 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:40 Download gff for
BO01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 142..1833 | 17..1710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:40 Download gff for
BO01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7510792..7511784 | 719..1710 | 99 | <- | Minus |
| 2R | 7511841..7512203 | 356..718 | 100 | <- | Minus |
| 2R | 7512270..7512608 | 17..355 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:46 Download gff for
BO01233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3398297..3399289 | 719..1710 | 99 | <- | Minus |
| arm_2R | 3399346..3399708 | 356..718 | 100 | <- | Minus |
| arm_2R | 3399775..3400113 | 17..355 | 100 | | Minus |
BO01233.pep Sequence
Translation from 16 to 1726
> BO01233.pep
MEFKRWREFIVHVKEHLEANPSMQQELTTSEVISSAKCEEEVSPAKVFIV
EEPPENCLAEDMFVDVPPSSENDESTSPVEEEEEEDDEVDSSSMTVDCEL
GTRNSTHFAPLTKFNPTFYRRSPRITQFIELYKQQTCLWDPADESYRDKE
KRANAYEELLEQLKATVNLHLTAYKLKKCITSLHAQYASISRQKKTQKLT
KVPLYYHGKYSFLAERGSLEDADSDDVDGDGKIKLVFTEENQLTTQFIDL
YSKFPQLYDPAHKHFCNLNVRKSSLIEITDLLTSEFSLGLVTHYDVYDSI
QSMRQWYSRRIKTLTDVQCVGLSLAEKQYIERCNSFMPTKSFRQKLKCEV
CEHSFSTDHALQAHQFRDHKMGDGGWFRCTLCELNFDRKCHLQQHSQRVH
MDKSFVCEICSRSFAFGNQLAIHKRTHDEKHVAKPFVCEFCGKCFKQKIQ
MTTHVTAVHTKIRAFKCDMCPKDFLTKRDLKDHVKAHLNIRDKVCEVCQK
AFTNANALVKHRHIHKEKTLQCSLCTTRFSERVSLGVHMRRTHKILKSSL
SSSDALFTKTFPQPASFLDH
BO01233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-PA | 593 | CG1605-PA | 30..593 | 1..564 | 3012 | 100 | Plus |
| CG1602-PA | 577 | CG1602-PA | 27..565 | 1..549 | 999 | 39.1 | Plus |
| CG1603-PB | 586 | CG1603-PB | 136..586 | 70..518 | 683 | 33 | Plus |
| CG1603-PA | 586 | CG1603-PA | 136..586 | 70..518 | 683 | 33 | Plus |
| rgr-PA | 856 | CG8643-PA | 434..847 | 129..543 | 360 | 25.3 | Plus |
