Clone BO01243 Report

Search the DGRC for BO01243

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG8301-RA
Protein status:BO01243.pep: Inserted from web
Sequenced Size:1855

Clone Sequence Records

BO01243.5prime Sequence

827 bp (802 high quality bases) assembled on 2005-11-30

> BO01243.5prime
GAAGTTATCAGTCGACATGGAAACGTGCCGCACCTGTGCGATTTCCATGT
TCGTGTGCGATTTCGAAAATGGCAGCAATAACAGCCACTTCCTGGACCTC
CATCATCCCAACTGCTGGCCCAGCGAAATGGCCCAGATTCGCCTCCAGTT
CGCCAACTGGAATCTAAAGATATCTCCCAACGATGGACTGCCCCAGAAGA
TCTGCAGCGACTGCTTCACCAAGTTCTGCTCGATCAACGCATTCCGCTTG
GCCTGCCAGGAGGCACAGCTGAAGCTGTCCCACATCTACGACAAGATCGA
TGCCAGCAGCCTGGAAGATGATGAGATTGGACAGGAGGACTTGGAGCCAG
CGGAAGAGCATCAGGAAACGGAAACTACCAAACCAACAACGACGGTTTCA
GCCGAAACACAACCAAACAACACTGCCAGTGATCCCATAGAGATTTTCGT
GGATGCCGTAGACATCGACGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGC
AGCAGCAGCAGTATGATGAGGAGGTGGAGGAACCAATCACGGATGAGTCT
GCTCCCCCACAACTGACCATTAGCTATGCCTGCAAGTTCTGTCTGCGCCC
GCAGGAGAACTACCAGCTGCAGCAACTCTTGTTGGAGCACATCAACGCTA
GCCACGATCCGGAGCAACCGTACAATTGTCCGGAGTGCGAGGCACGCTTT
CAGGACGCCGCATCGCGCACAGTTCACCTGAAAAGCAGCCACGTGGAGAA
GCAACATGCCTGCGGCGTGTGCGGCAAGAAGTACGGCGACAGGCACAATC
TGCGCCACCACGTTGAGAAGTACCATT

BO01243.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8301-PA 1824 CG8301-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8301-RA 3094 CG8301-RA 663..1474 16..827 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9583452..9584111 168..827 3300 100 Plus
3R 32079331 3R 9581968..9582121 16..169 770 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:15:00 has no hits.

BO01243.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:29 Download gff for BO01243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8301-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:20 Download gff for BO01243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8301-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:53:57 Download gff for BO01243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8301-RA 657..1474 9..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:15 Download gff for BO01243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8301-RA 657..1474 9..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:15 Download gff for BO01243.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9581962..9582121 9..169 98 -> Plus
3R 9583454..9584111 170..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:53:57 Download gff for BO01243.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5407684..5407843 9..169 98 -> Plus
arm_3R 5409176..5409833 170..827 100   Plus

BO01243.complete Sequence

1855 bp assembled on 2008-11-11

GenBank Submission: KX798436

> BO01243.complete
GAAGTTATCAGTCGACATGGAAACGTGCCGCACCTGTGCGATTTCCATGT
TCGTGTGCGATTTCGAAAATGGCAGCAATAACAGCCACTTCCTGGACCTC
CATCATCCCAACTGCTGGCCCAGCGAAATGGCCCAGATTCGCCTCCAGTT
CGCCAACTGGAATCTAAAGATATCTCCCAACGATGGACTGCCCCAGAAGA
TCTGCAGCGACTGCTTCACCAAGTTCTGCTCGATCAACGCATTCCGCTTG
GCCTGCCAGGAGGCACAGCTGAAGCTGTCCCACATCTACGACAAGATCGA
TGCCAGCAGCCTGGAAGATGATGAGATTGGACAGGAGGACTTGGAGCCAG
CGGAAGAGCATCAGGAAACGGAAACTACCAAACCAACAACGACGGTTTCA
GCCGAAACACAACCAAACAACACTGCCAGTGATCCCATAGAGATTTTCGT
GGATGCCGTAGACATCGACGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGC
AGCAGCAGCAGTATGATGAGGAGGTGGAGGAACCAATCACGGATGAGTCT
GCTCCCCCACAACTGACCATTAGCTATGCCTGCAAGTTCTGTCTGCGCCC
GCAGGAGAACTACCAGCTGCAGCAACTCTTGTTGGAGCACATCAACGCTA
GCCACGATCCGGAGCAACCGTACAATTGTCCGGAGTGCGAGGCACGCTTT
CAGGACGCCGCATCGCGCACAGTTCACCTGAAAAGCAGCCACGTGGAGAA
GCAACATGCCTGCGGCGTGTGCGGCAAGAAGTACGGCGACAGGCACAATC
TGCGCCACCACGTTGAGAAGTACCATTCGGAGACGGACTTTGAGTGCGCG
CTATGCGAGAAGCGCTTCTACACCCGCAAGAGCCTCAACTATCACATGAA
GTGGCACAATCCGGATCGCCAGTTCAAGTGTCGCCACAGCGGATGCGAGC
GACTCTTCATCAGCCAGCGGCATCTCATGTGCCACGAGGCCACCCACTCG
GGCACCAGTTCCAGGAAGAGCGAACACTGCGGCTTCTGCGGCAAGACATT
CATCCATCTGAAGACCCTTCGCTGGCACATTTACCGGCAGCATGGCGGGG
AGAAGCCCTACAAGTGTGCCAATTGCACGGAGGTCTTTGCATCCTATGCG
GAGAAAAGGATTCACATGCTGGAGCGGCACAGGGAGAACCTGACTGCCAT
CGAGCGGAGTGAGTGCATGCTGTGCCGCCAGCCCTTCTCCAGCGAACCGG
ATTTGATCCACCACATGTCCGCGGAGCACTTGCAGCGTCCTGGCGCTCCC
ATCATAGCGAACAACAAACGGGTGCTGCAACAGAAGCGGGAACGCCAGTA
CTCCGGACTCTTTCAGTGCGGCAGCTGCAGCCAGAGGTTCAACATGAAGT
CCGCTCTGGAGCGGCACGCTGCCGTGCATTCCGAGAAGGATCGACCGCAC
GCCTGCCCGCACTGTTCCAAGCGGTTCAAGCGCGCCCAGGACATGAAGTG
GCACATCAAGACCCACGAGAAGGAGAAGCCCAATGTGTGCGATGTTTGCG
GCAAGGCATTCGCCCTCAAGTATGTGCTCACCCAGCATCGCTTGAGTCAC
GAGGTCTTGGAGAAGAACTTCAAGTGCAACGTTTGCGGTCGAGCCTATCT
GTTTGAGAAGTCATTGCGGCTGCATCAGCGAACTCACACGGGCAAAACCT
ACTACAAATGCGATCTCTGTCAGGAAAGATTTGTCACGCACATTAAGCTC
AAGACTCACATGCAAAAGGCACACGCCGCCTCTCAGCCGCACTCGGCGGA
CCAGCCTCTGGACGATCTGATCAACATTGTGATTTCCGCAAGCTTTCTAG
ACCAT

BO01243.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8301-RA 1824 CG8301-PA 1..1821 17..1837 9105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8301-RA 3094 CG8301-RA 663..2484 16..1837 9110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9583452..9584330 168..1046 4395 100 Plus
3R 32079331 3R 9585215..9585686 1133..1604 2360 100 Plus
3R 32079331 3R 9581968..9582121 16..169 770 100 Plus
3R 32079331 3R 9585748..9585898 1604..1754 755 100 Plus
3R 32079331 3R 9584484..9584570 1047..1133 435 100 Plus
3R 32079331 3R 9585956..9586038 1755..1837 415 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:25:49 has no hits.

BO01243.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 10:54:26 Download gff for BO01243.complete
Subject Subject Range Query Range Percent Splice Strand
CG8301-RA 658..2478 17..1839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:49 Download gff for BO01243.complete
Subject Subject Range Query Range Percent Splice Strand
CG8301-RA 664..2484 17..1839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:30 Download gff for BO01243.complete
Subject Subject Range Query Range Percent Splice Strand
CG8301-RA 664..2484 17..1839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:30 Download gff for BO01243.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9581969..9582121 17..169 100 -> Plus
3R 9583454..9584330 170..1046 100 -> Plus
3R 9584484..9584570 1047..1133 100 -> Plus
3R 9585216..9585686 1134..1604 100 -> Plus
3R 9585749..9585898 1605..1754 100 -> Plus
3R 9585956..9586038 1755..1839 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:49 Download gff for BO01243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5410206..5410292 1047..1133 100 -> Plus
arm_3R 5407691..5407843 17..169 100 -> Plus
arm_3R 5409176..5410052 170..1046 100 -> Plus
arm_3R 5411471..5411620 1605..1754 100 -> Plus
arm_3R 5411678..5411760 1755..1839 97   Plus
arm_3R 5410938..5411408 1134..1604 100 -> Plus

BO01243.pep Sequence

Translation from 16 to 1855

> BO01243.pep
METCRTCAISMFVCDFENGSNNSHFLDLHHPNCWPSEMAQIRLQFANWNL
KISPNDGLPQKICSDCFTKFCSINAFRLACQEAQLKLSHIYDKIDASSLE
DDEIGQEDLEPAEEHQETETTKPTTTVSAETQPNNTASDPIEIFVDAVDI
DEAEEEEEEEEQQQQYDEEVEEPITDESAPPQLTISYACKFCLRPQENYQ
LQQLLLEHINASHDPEQPYNCPECEARFQDAASRTVHLKSSHVEKQHACG
VCGKKYGDRHNLRHHVEKYHSETDFECALCEKRFYTRKSLNYHMKWHNPD
RQFKCRHSGCERLFISQRHLMCHEATHSGTSSRKSEHCGFCGKTFIHLKT
LRWHIYRQHGGEKPYKCANCTEVFASYAEKRIHMLERHRENLTAIERSEC
MLCRQPFSSEPDLIHHMSAEHLQRPGAPIIANNKRVLQQKRERQYSGLFQ
CGSCSQRFNMKSALERHAAVHSEKDRPHACPHCSKRFKRAQDMKWHIKTH
EKEKPNVCDVCGKAFALKYVLTQHRLSHEVLEKNFKCNVCGRAYLFEKSL
RLHQRTHTGKTYYKCDLCQERFVTHIKLKTHMQKAHAASQPHSADQPLDD
LINIVISASFLDH

BO01243.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8301-PA 607 CG8301-PA 1..607 1..607 3345 100 Plus
crol-PI 962 CG14938-PI 333..703 187..593 522 27.8 Plus
crol-PE 962 CG14938-PE 333..703 187..593 522 27.8 Plus
crol-PA 962 CG14938-PA 333..703 187..593 522 27.8 Plus
crol-PF 907 CG14938-PF 305..670 187..586 512 30 Plus
crol-PI 962 CG14938-PI 215..613 181..592 434 25.2 Plus
crol-PE 962 CG14938-PE 215..613 181..592 434 25.2 Plus
crol-PA 962 CG14938-PA 215..613 181..592 434 25.2 Plus
crol-PI 962 CG14938-PI 389..725 187..528 397 28.7 Plus
crol-PE 962 CG14938-PE 389..725 187..528 397 28.7 Plus
crol-PA 962 CG14938-PA 389..725 187..528 397 28.7 Plus
crol-PI 962 CG14938-PI 417..727 187..503 355 27.5 Plus
crol-PE 962 CG14938-PE 417..727 187..503 355 27.5 Plus
crol-PA 962 CG14938-PA 417..727 187..503 355 27.5 Plus