Clone Sequence Records
BO01243.5prime Sequence
827 bp (802 high quality bases) assembled on 2005-11-30
> BO01243.5prime
GAAGTTATCAGTCGACATGGAAACGTGCCGCACCTGTGCGATTTCCATGT
TCGTGTGCGATTTCGAAAATGGCAGCAATAACAGCCACTTCCTGGACCTC
CATCATCCCAACTGCTGGCCCAGCGAAATGGCCCAGATTCGCCTCCAGTT
CGCCAACTGGAATCTAAAGATATCTCCCAACGATGGACTGCCCCAGAAGA
TCTGCAGCGACTGCTTCACCAAGTTCTGCTCGATCAACGCATTCCGCTTG
GCCTGCCAGGAGGCACAGCTGAAGCTGTCCCACATCTACGACAAGATCGA
TGCCAGCAGCCTGGAAGATGATGAGATTGGACAGGAGGACTTGGAGCCAG
CGGAAGAGCATCAGGAAACGGAAACTACCAAACCAACAACGACGGTTTCA
GCCGAAACACAACCAAACAACACTGCCAGTGATCCCATAGAGATTTTCGT
GGATGCCGTAGACATCGACGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGC
AGCAGCAGCAGTATGATGAGGAGGTGGAGGAACCAATCACGGATGAGTCT
GCTCCCCCACAACTGACCATTAGCTATGCCTGCAAGTTCTGTCTGCGCCC
GCAGGAGAACTACCAGCTGCAGCAACTCTTGTTGGAGCACATCAACGCTA
GCCACGATCCGGAGCAACCGTACAATTGTCCGGAGTGCGAGGCACGCTTT
CAGGACGCCGCATCGCGCACAGTTCACCTGAAAAGCAGCCACGTGGAGAA
GCAACATGCCTGCGGCGTGTGCGGCAAGAAGTACGGCGACAGGCACAATC
TGCGCCACCACGTTGAGAAGTACCATT
BO01243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8301-PA | 1824 | CG8301-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8301-RA | 3094 | CG8301-RA | 663..1474 | 16..827 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9583452..9584111 | 168..827 | 3300 | 100 | Plus |
3R | 32079331 | 3R | 9581968..9582121 | 16..169 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:15:00 has no hits.
BO01243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:29 Download gff for
BO01243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8301-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:20 Download gff for
BO01243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8301-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:53:57 Download gff for
BO01243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8301-RA | 657..1474 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:15 Download gff for
BO01243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8301-RA | 657..1474 | 9..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:15 Download gff for
BO01243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9581962..9582121 | 9..169 | 98 | -> | Plus |
3R | 9583454..9584111 | 170..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:53:57 Download gff for
BO01243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5407684..5407843 | 9..169 | 98 | -> | Plus |
arm_3R | 5409176..5409833 | 170..827 | 100 | | Plus |
BO01243.complete Sequence
1855 bp assembled on 2008-11-11
GenBank Submission: KX798436
> BO01243.complete
GAAGTTATCAGTCGACATGGAAACGTGCCGCACCTGTGCGATTTCCATGT
TCGTGTGCGATTTCGAAAATGGCAGCAATAACAGCCACTTCCTGGACCTC
CATCATCCCAACTGCTGGCCCAGCGAAATGGCCCAGATTCGCCTCCAGTT
CGCCAACTGGAATCTAAAGATATCTCCCAACGATGGACTGCCCCAGAAGA
TCTGCAGCGACTGCTTCACCAAGTTCTGCTCGATCAACGCATTCCGCTTG
GCCTGCCAGGAGGCACAGCTGAAGCTGTCCCACATCTACGACAAGATCGA
TGCCAGCAGCCTGGAAGATGATGAGATTGGACAGGAGGACTTGGAGCCAG
CGGAAGAGCATCAGGAAACGGAAACTACCAAACCAACAACGACGGTTTCA
GCCGAAACACAACCAAACAACACTGCCAGTGATCCCATAGAGATTTTCGT
GGATGCCGTAGACATCGACGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGC
AGCAGCAGCAGTATGATGAGGAGGTGGAGGAACCAATCACGGATGAGTCT
GCTCCCCCACAACTGACCATTAGCTATGCCTGCAAGTTCTGTCTGCGCCC
GCAGGAGAACTACCAGCTGCAGCAACTCTTGTTGGAGCACATCAACGCTA
GCCACGATCCGGAGCAACCGTACAATTGTCCGGAGTGCGAGGCACGCTTT
CAGGACGCCGCATCGCGCACAGTTCACCTGAAAAGCAGCCACGTGGAGAA
GCAACATGCCTGCGGCGTGTGCGGCAAGAAGTACGGCGACAGGCACAATC
TGCGCCACCACGTTGAGAAGTACCATTCGGAGACGGACTTTGAGTGCGCG
CTATGCGAGAAGCGCTTCTACACCCGCAAGAGCCTCAACTATCACATGAA
GTGGCACAATCCGGATCGCCAGTTCAAGTGTCGCCACAGCGGATGCGAGC
GACTCTTCATCAGCCAGCGGCATCTCATGTGCCACGAGGCCACCCACTCG
GGCACCAGTTCCAGGAAGAGCGAACACTGCGGCTTCTGCGGCAAGACATT
CATCCATCTGAAGACCCTTCGCTGGCACATTTACCGGCAGCATGGCGGGG
AGAAGCCCTACAAGTGTGCCAATTGCACGGAGGTCTTTGCATCCTATGCG
GAGAAAAGGATTCACATGCTGGAGCGGCACAGGGAGAACCTGACTGCCAT
CGAGCGGAGTGAGTGCATGCTGTGCCGCCAGCCCTTCTCCAGCGAACCGG
ATTTGATCCACCACATGTCCGCGGAGCACTTGCAGCGTCCTGGCGCTCCC
ATCATAGCGAACAACAAACGGGTGCTGCAACAGAAGCGGGAACGCCAGTA
CTCCGGACTCTTTCAGTGCGGCAGCTGCAGCCAGAGGTTCAACATGAAGT
CCGCTCTGGAGCGGCACGCTGCCGTGCATTCCGAGAAGGATCGACCGCAC
GCCTGCCCGCACTGTTCCAAGCGGTTCAAGCGCGCCCAGGACATGAAGTG
GCACATCAAGACCCACGAGAAGGAGAAGCCCAATGTGTGCGATGTTTGCG
GCAAGGCATTCGCCCTCAAGTATGTGCTCACCCAGCATCGCTTGAGTCAC
GAGGTCTTGGAGAAGAACTTCAAGTGCAACGTTTGCGGTCGAGCCTATCT
GTTTGAGAAGTCATTGCGGCTGCATCAGCGAACTCACACGGGCAAAACCT
ACTACAAATGCGATCTCTGTCAGGAAAGATTTGTCACGCACATTAAGCTC
AAGACTCACATGCAAAAGGCACACGCCGCCTCTCAGCCGCACTCGGCGGA
CCAGCCTCTGGACGATCTGATCAACATTGTGATTTCCGCAAGCTTTCTAG
ACCAT
BO01243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8301-RA | 1824 | CG8301-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8301-RA | 3094 | CG8301-RA | 663..2484 | 16..1837 | 9110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9583452..9584330 | 168..1046 | 4395 | 100 | Plus |
3R | 32079331 | 3R | 9585215..9585686 | 1133..1604 | 2360 | 100 | Plus |
3R | 32079331 | 3R | 9581968..9582121 | 16..169 | 770 | 100 | Plus |
3R | 32079331 | 3R | 9585748..9585898 | 1604..1754 | 755 | 100 | Plus |
3R | 32079331 | 3R | 9584484..9584570 | 1047..1133 | 435 | 100 | Plus |
3R | 32079331 | 3R | 9585956..9586038 | 1755..1837 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:25:49 has no hits.
BO01243.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 10:54:26 Download gff for
BO01243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8301-RA | 658..2478 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:49 Download gff for
BO01243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8301-RA | 664..2484 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:30 Download gff for
BO01243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8301-RA | 664..2484 | 17..1839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:30 Download gff for
BO01243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9581969..9582121 | 17..169 | 100 | -> | Plus |
3R | 9583454..9584330 | 170..1046 | 100 | -> | Plus |
3R | 9584484..9584570 | 1047..1133 | 100 | -> | Plus |
3R | 9585216..9585686 | 1134..1604 | 100 | -> | Plus |
3R | 9585749..9585898 | 1605..1754 | 100 | -> | Plus |
3R | 9585956..9586038 | 1755..1839 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:49 Download gff for
BO01243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5410206..5410292 | 1047..1133 | 100 | -> | Plus |
arm_3R | 5407691..5407843 | 17..169 | 100 | -> | Plus |
arm_3R | 5409176..5410052 | 170..1046 | 100 | -> | Plus |
arm_3R | 5411471..5411620 | 1605..1754 | 100 | -> | Plus |
arm_3R | 5411678..5411760 | 1755..1839 | 97 | | Plus |
arm_3R | 5410938..5411408 | 1134..1604 | 100 | -> | Plus |
BO01243.pep Sequence
Translation from 16 to 1855
> BO01243.pep
METCRTCAISMFVCDFENGSNNSHFLDLHHPNCWPSEMAQIRLQFANWNL
KISPNDGLPQKICSDCFTKFCSINAFRLACQEAQLKLSHIYDKIDASSLE
DDEIGQEDLEPAEEHQETETTKPTTTVSAETQPNNTASDPIEIFVDAVDI
DEAEEEEEEEEQQQQYDEEVEEPITDESAPPQLTISYACKFCLRPQENYQ
LQQLLLEHINASHDPEQPYNCPECEARFQDAASRTVHLKSSHVEKQHACG
VCGKKYGDRHNLRHHVEKYHSETDFECALCEKRFYTRKSLNYHMKWHNPD
RQFKCRHSGCERLFISQRHLMCHEATHSGTSSRKSEHCGFCGKTFIHLKT
LRWHIYRQHGGEKPYKCANCTEVFASYAEKRIHMLERHRENLTAIERSEC
MLCRQPFSSEPDLIHHMSAEHLQRPGAPIIANNKRVLQQKRERQYSGLFQ
CGSCSQRFNMKSALERHAAVHSEKDRPHACPHCSKRFKRAQDMKWHIKTH
EKEKPNVCDVCGKAFALKYVLTQHRLSHEVLEKNFKCNVCGRAYLFEKSL
RLHQRTHTGKTYYKCDLCQERFVTHIKLKTHMQKAHAASQPHSADQPLDD
LINIVISASFLDH
BO01243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8301-PA | 607 | CG8301-PA | 1..607 | 1..607 | 3345 | 100 | Plus |
crol-PI | 962 | CG14938-PI | 333..703 | 187..593 | 522 | 27.8 | Plus |
crol-PE | 962 | CG14938-PE | 333..703 | 187..593 | 522 | 27.8 | Plus |
crol-PA | 962 | CG14938-PA | 333..703 | 187..593 | 522 | 27.8 | Plus |
crol-PF | 907 | CG14938-PF | 305..670 | 187..586 | 512 | 30 | Plus |
crol-PI | 962 | CG14938-PI | 215..613 | 181..592 | 434 | 25.2 | Plus |
crol-PE | 962 | CG14938-PE | 215..613 | 181..592 | 434 | 25.2 | Plus |
crol-PA | 962 | CG14938-PA | 215..613 | 181..592 | 434 | 25.2 | Plus |
crol-PI | 962 | CG14938-PI | 389..725 | 187..528 | 397 | 28.7 | Plus |
crol-PE | 962 | CG14938-PE | 389..725 | 187..528 | 397 | 28.7 | Plus |
crol-PA | 962 | CG14938-PA | 389..725 | 187..528 | 397 | 28.7 | Plus |
crol-PI | 962 | CG14938-PI | 417..727 | 187..503 | 355 | 27.5 | Plus |
crol-PE | 962 | CG14938-PE | 417..727 | 187..503 | 355 | 27.5 | Plus |
crol-PA | 962 | CG14938-PA | 417..727 | 187..503 | 355 | 27.5 | Plus |