Clone BO01245 Report

Search the DGRC for BO01245

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptey-RB
Protein status:BO01245.pep: Inserted from web
Sequenced Size:1906

Clone Sequence Records

BO01245.5prime Sequence

884 bp (715 high quality bases) assembled on 2005-11-30

> BO01245.5prime
GAAGTTATCAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAA
GCGGTGGCGCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTAC
GAGAAGCTTCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACT
GGAGCCTGCCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAG
GAACCCGATCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTA
CAGCAGCATCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTG
GTACCCCACCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCG
CATCCGTTACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGT
CCACCCAACGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTG
CCCCGTTGCAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATC
AGTCCGATGAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCT
TCAAATATAGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAG
AAAGTTGCAACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTC
TTGAAAAAGAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAA
CGTTTGGCTGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTT
CTCAAACCGTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGC
GAAGAACACCAAATTCCACAGGAGCTAGTGCAACTTCTTCCTCTACATCG
GCAACCGCCTCTTTGACTGACAGCCCTAACAGCC

BO01245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1464-PB 1875 ey-RB 1..868 17..884 4340 100 Plus
CG1464-PA 2517 ey-RA 643..1510 17..884 4340 100 Plus
CG1464-PC 2574 ey-RC 700..1567 17..884 4340 100 Plus
CG1464-PD 2697 ey-RD 823..1690 17..884 4340 100 Plus
CG11186-PA 1632 toy-RA 832..881 644..693 150 92 Plus
CG11186-PA 1632 toy-RA 904..962 716..774 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
ey-RD 3462 CG1464-RD 1337..2204 17..884 4340 100 Plus
ey-RC 2902 CG1464-RC 777..1644 17..884 4340 100 Plus
ey-RA 3282 CG1464-RA 1157..2024 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 714044..714512 17..485 2345 100 Plus
4 1348131 4 717652..717878 658..884 1135 100 Plus
4 1348131 4 717125..717300 484..659 880 100 Plus
4 1348131 4 998621..998710 658..747 210 82.2 Plus
Blast to na_te.dros performed on 2015-02-12 00:11:52 has no hits.

BO01245.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:31 Download gff for BO01245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1464-PB 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:22 Download gff for BO01245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1464-PD 819..1690 12..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:22 Download gff for BO01245.5prime
Subject Subject Range Query Range Percent Splice Strand
ey-RA 1153..2024 12..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:03 Download gff for BO01245.5prime
Subject Subject Range Query Range Percent Splice Strand
ey-RA 1153..2024 12..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:03 Download gff for BO01245.5prime
Subject Subject Range Query Range Percent Splice Strand
4 717654..717878 660..884 100   Plus
4 714040..714512 12..485 99 -> Plus
4 717127..717300 486..659 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:22 Download gff for BO01245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 734666..735138 12..485 99 -> Plus
arm_4 737753..737926 486..659 100 -> Plus
arm_4 738280..738504 660..884 100   Plus

BO01245.complete Sequence

1906 bp assembled on 2008-11-11

GenBank Submission: KX796502

> BO01245.complete
GAAGTTATCAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAA
GCGGTGGCGCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTAC
GAGAAGCTTCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACT
GGAGCCTGCCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAG
GAACCCGATCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTA
CAGCAGCATCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTG
GTACCCCACCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCG
CATCCGTTACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGT
CCACCCAACGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTG
CCCCGTTGCAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATC
AGTCCGATGAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCT
TCAAATATAGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAG
AAAGTTGCAACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTC
TTGAAAAAGAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAA
CGTTTGGCTGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTT
CTCAAACCGTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGC
GAAGAACACCAAATTCCACAGGAGCTAGTGCAACTTCTTCCTCTACATCG
GCAACCGCCTCTTTGACTGACAGCCCTAACAGCCTAAGTGCTTGTTCCTC
GCTGCTGTCCGGATCAGCTGGGGGTCCCTCAGTCAGTACCATTAATGGCT
TATCGTCTCCAAGCACATTGTCTACTAATGTCAATGCTCCAACGCTTGGC
GCTGGGATCGATAGCTCTGAAAGCCCAACACCAATCCCGCACATTCGCCC
TAGCTGCACTTCTGACAATGACAATGGTCGTCAAAGTGAAGATTGCAGAA
GAGTTTGTTCTCCATGCCCACTTGGCGTTGGCGGGCATCAAAATACTCAT
CATATCCAGAGCAATGGTCACGCCCAAGGTCATGCACTTGTTCCTGCCAT
TTCGCCACGACTCAATTTTAATAGTGGTAGTTTCGGCGCGATGTACTCCA
ACATGCATCATACGGCGTTATCCATGAGCGATTCATATGGGGCGGTTACG
CCGATTCCGAGCTTTAACCACTCAGCTGTCGGTCCGCTGGCTCCGCCATC
GCCAATACCGCAACAGGGCGATCTTACCCCTTCCTCGTTATATCCGTGCC
ACATGACCCTACGACCCCCTCCGATGGCTCCCGCTCACCATCACATCGTG
CCGGGTGACGGTGGCAGACCTGCGGGCGTTGGCCTAGGCAGTGGCCAATC
TGCGAATTTGGGAGCAAGCTGCAGCGGATCGGGATACGAAGTGCTATCTG
CCTACGCGTTGCCACCGCCCCCTATGGCGTCGAGCTCTGCTGCTGATTCA
AGCTTCTCAGCCGCGTCCAGTGCCAGCGCTAATGTGACCCCACATCACAC
CATAGCCCAAGAATCATGCCCCTCTCCGTGTTCAAGCGCGAGCCACTTTG
GAGTTGCTCACAGTTCTGGGTTTTCGTCCGACCCGATTTCACCGGCTGTA
TCTTCGTATGCACATATGAGCTACAATTACGCGTCGTCCGCTAACACCAT
GACGCCTTCCTCCGCCAGCGGCACATCAGCACACGTGGCCCCGGGAAAAC
AACAGTTCTTCGCCTCCTGTTTCTACTCACCGTGGGTCGCAAGCTTTCTA
GACCAT

BO01245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
ey-RD 2697 CG1464-PD 823..2694 17..1888 9330 99.9 Plus
ey-RC 2574 CG1464-PC 700..2571 17..1888 9330 99.9 Plus
ey-RA 2517 CG1464-PA 643..2514 17..1888 9330 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
ey-RD 3462 CG1464-RD 1337..3208 17..1888 9330 99.9 Plus
ey-RC 2902 CG1464-RC 777..2648 17..1888 9330 99.9 Plus
ey-RA 3282 CG1464-RA 1157..3028 17..1888 9330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 720321..720919 1290..1888 2995 100 Plus
4 1348131 4 714044..714512 17..485 2345 100 Plus
4 1348131 4 719274..719629 936..1291 1750 99.4 Plus
4 1348131 4 717652..717932 658..938 1405 100 Plus
4 1348131 4 717125..717300 484..659 880 100 Plus
4 1348131 4 998621..998710 658..747 210 82.2 Plus
Blast to na_te.dros performed 2014-11-27 20:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-element 4789 Doc2-element DOC2 4789bp 2369..2472 1271..1375 117 58.1 Plus

BO01245.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 11:53:04 Download gff for BO01245.complete
Subject Subject Range Query Range Percent Splice Strand
ey-RC 777..2648 17..1890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:06 Download gff for BO01245.complete
Subject Subject Range Query Range Percent Splice Strand
ey-RA 1157..3028 17..1890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:58 Download gff for BO01245.complete
Subject Subject Range Query Range Percent Splice Strand
ey-RA 1157..3028 17..1890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:58 Download gff for BO01245.complete
Subject Subject Range Query Range Percent Splice Strand
4 717654..717929 660..935 100 -> Plus
4 719274..719628 936..1290 99 -> Plus
4 714044..714512 17..485 100 -> Plus
4 717127..717300 486..659 100 -> Plus
4 720322..720919 1291..1890 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:06 Download gff for BO01245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 734670..735138 17..485 100 -> Plus
arm_4 737753..737926 486..659 100 -> Plus
arm_4 738280..738555 660..935 100 -> Plus
arm_4 739900..740254 936..1290 99 -> Plus
arm_4 740948..741545 1291..1890 99   Plus

BO01245.pep Sequence

Translation from 16 to 1906

> BO01245.pep
MQTATPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARA
APLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQSWPPRHYSGSWYPTSL
SEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATE
DIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRN
RTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRA
KWRREEKLRNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGS
AGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCTSD
NDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLN
FNSGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQ
GDLTPSSLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLGA
SCSGSGYEVLSAYALPPPPMASSSAADSSFSAASSASANVTPHHTIAQES
CPSPCSSASHFGVAHSSGFSSDPISPAVSSYAHMSYNYASSANTMTPSSA
SGTSAHVAPGKQQFFASCFYSPWVASFLDH

BO01245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
ey-PD 898 CG1464-PD 275..898 1..624 3295 100 Plus
ey-PC 857 CG1464-PC 234..857 1..624 3295 100 Plus
ey-PA 838 CG1464-PA 215..838 1..624 3295 100 Plus
ey-PB 624 CG1464-PB 1..624 1..624 3295 100 Plus
toy-PA 543 CG11186-PA 162..481 76..475 460 36.1 Plus