Clone Sequence Records
BO01245.5prime Sequence
884 bp (715 high quality bases) assembled on 2005-11-30
> BO01245.5prime
GAAGTTATCAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAA
GCGGTGGCGCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTAC
GAGAAGCTTCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACT
GGAGCCTGCCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAG
GAACCCGATCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTA
CAGCAGCATCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTG
GTACCCCACCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCG
CATCCGTTACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGT
CCACCCAACGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTG
CCCCGTTGCAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATC
AGTCCGATGAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCT
TCAAATATAGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAG
AAAGTTGCAACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTC
TTGAAAAAGAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAA
CGTTTGGCTGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTT
CTCAAACCGTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGC
GAAGAACACCAAATTCCACAGGAGCTAGTGCAACTTCTTCCTCTACATCG
GCAACCGCCTCTTTGACTGACAGCCCTAACAGCC
BO01245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1464-PB | 1875 | ey-RB | 1..868 | 17..884 | 4340 | 100 | Plus |
CG1464-PA | 2517 | ey-RA | 643..1510 | 17..884 | 4340 | 100 | Plus |
CG1464-PC | 2574 | ey-RC | 700..1567 | 17..884 | 4340 | 100 | Plus |
CG1464-PD | 2697 | ey-RD | 823..1690 | 17..884 | 4340 | 100 | Plus |
CG11186-PA | 1632 | toy-RA | 832..881 | 644..693 | 150 | 92 | Plus |
CG11186-PA | 1632 | toy-RA | 904..962 | 716..774 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-RD | 3462 | CG1464-RD | 1337..2204 | 17..884 | 4340 | 100 | Plus |
ey-RC | 2902 | CG1464-RC | 777..1644 | 17..884 | 4340 | 100 | Plus |
ey-RA | 3282 | CG1464-RA | 1157..2024 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 714044..714512 | 17..485 | 2345 | 100 | Plus |
4 | 1348131 | 4 | 717652..717878 | 658..884 | 1135 | 100 | Plus |
4 | 1348131 | 4 | 717125..717300 | 484..659 | 880 | 100 | Plus |
4 | 1348131 | 4 | 998621..998710 | 658..747 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:11:52 has no hits.
BO01245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:31 Download gff for
BO01245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1464-PB | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:22 Download gff for
BO01245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1464-PD | 819..1690 | 12..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:22 Download gff for
BO01245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 1153..2024 | 12..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:03 Download gff for
BO01245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 1153..2024 | 12..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:03 Download gff for
BO01245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 717654..717878 | 660..884 | 100 | | Plus |
4 | 714040..714512 | 12..485 | 99 | -> | Plus |
4 | 717127..717300 | 486..659 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:22 Download gff for
BO01245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 734666..735138 | 12..485 | 99 | -> | Plus |
arm_4 | 737753..737926 | 486..659 | 100 | -> | Plus |
arm_4 | 738280..738504 | 660..884 | 100 | | Plus |
BO01245.complete Sequence
1906 bp assembled on 2008-11-11
GenBank Submission: KX796502
> BO01245.complete
GAAGTTATCAGTCGACATGCAGACAGCCACTCCTCTTAACTCTTCGGAAA
GCGGTGGCGCAAGCAACTCCGGGGAGGGTAGTGAACAGGAGGCGATTTAC
GAGAAGCTTCGGCTGTTAAATACTCAGCACGCTGCAGGACCAGGACCACT
GGAGCCTGCCAGAGCAGCGCCCTTGGTAGGTCAATCACCCAACCACCTAG
GAACCCGATCCAGCCACCCCCAGCTGGTGCACGGTAACCATCAGGCACTA
CAGCAGCATCAACAGCAGAGCTGGCCGCCCCGTCACTATTCCGGATCTTG
GTACCCCACCTCTCTTAGCGAAATACCCATCTCATCGGCTCCCAATATCG
CATCCGTTACGGCGTATGCATCAGGACCTTCACTTGCTCACTCACTGAGT
CCACCCAACGACATCGAAAGCCTGGCCAGTATCGGTCACCAGAGAAACTG
CCCCGTTGCAACGGAGGACATACATTTAAAAAAAGAACTTGATGGTCATC
AGTCCGATGAAACGGGCTCCGGTGAAGGTGAAAACTCCAATGGTGGCGCT
TCAAATATAGGAAACACTGAGGATGATCAAGCTCGGCTCATACTAAAAAG
AAAGTTGCAACGCAATCGAACATCTTTCACGAACGACCAGATAGACAGTC
TTGAAAAAGAGTTTGAACGAACACACTATCCAGATGTTTTTGCCCGCGAA
CGTTTGGCTGGAAAGATTGGGTTGCCAGAGGCAAGAATTCAGGTTTGGTT
CTCAAACCGTCGAGCAAAATGGCGTCGCGAGGAGAAGCTGCGAAACCAGC
GAAGAACACCAAATTCCACAGGAGCTAGTGCAACTTCTTCCTCTACATCG
GCAACCGCCTCTTTGACTGACAGCCCTAACAGCCTAAGTGCTTGTTCCTC
GCTGCTGTCCGGATCAGCTGGGGGTCCCTCAGTCAGTACCATTAATGGCT
TATCGTCTCCAAGCACATTGTCTACTAATGTCAATGCTCCAACGCTTGGC
GCTGGGATCGATAGCTCTGAAAGCCCAACACCAATCCCGCACATTCGCCC
TAGCTGCACTTCTGACAATGACAATGGTCGTCAAAGTGAAGATTGCAGAA
GAGTTTGTTCTCCATGCCCACTTGGCGTTGGCGGGCATCAAAATACTCAT
CATATCCAGAGCAATGGTCACGCCCAAGGTCATGCACTTGTTCCTGCCAT
TTCGCCACGACTCAATTTTAATAGTGGTAGTTTCGGCGCGATGTACTCCA
ACATGCATCATACGGCGTTATCCATGAGCGATTCATATGGGGCGGTTACG
CCGATTCCGAGCTTTAACCACTCAGCTGTCGGTCCGCTGGCTCCGCCATC
GCCAATACCGCAACAGGGCGATCTTACCCCTTCCTCGTTATATCCGTGCC
ACATGACCCTACGACCCCCTCCGATGGCTCCCGCTCACCATCACATCGTG
CCGGGTGACGGTGGCAGACCTGCGGGCGTTGGCCTAGGCAGTGGCCAATC
TGCGAATTTGGGAGCAAGCTGCAGCGGATCGGGATACGAAGTGCTATCTG
CCTACGCGTTGCCACCGCCCCCTATGGCGTCGAGCTCTGCTGCTGATTCA
AGCTTCTCAGCCGCGTCCAGTGCCAGCGCTAATGTGACCCCACATCACAC
CATAGCCCAAGAATCATGCCCCTCTCCGTGTTCAAGCGCGAGCCACTTTG
GAGTTGCTCACAGTTCTGGGTTTTCGTCCGACCCGATTTCACCGGCTGTA
TCTTCGTATGCACATATGAGCTACAATTACGCGTCGTCCGCTAACACCAT
GACGCCTTCCTCCGCCAGCGGCACATCAGCACACGTGGCCCCGGGAAAAC
AACAGTTCTTCGCCTCCTGTTTCTACTCACCGTGGGTCGCAAGCTTTCTA
GACCAT
BO01245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-RD | 2697 | CG1464-PD | 823..2694 | 17..1888 | 9330 | 99.9 | Plus |
ey-RC | 2574 | CG1464-PC | 700..2571 | 17..1888 | 9330 | 99.9 | Plus |
ey-RA | 2517 | CG1464-PA | 643..2514 | 17..1888 | 9330 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-RD | 3462 | CG1464-RD | 1337..3208 | 17..1888 | 9330 | 99.9 | Plus |
ey-RC | 2902 | CG1464-RC | 777..2648 | 17..1888 | 9330 | 99.9 | Plus |
ey-RA | 3282 | CG1464-RA | 1157..3028 | 17..1888 | 9330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 720321..720919 | 1290..1888 | 2995 | 100 | Plus |
4 | 1348131 | 4 | 714044..714512 | 17..485 | 2345 | 100 | Plus |
4 | 1348131 | 4 | 719274..719629 | 936..1291 | 1750 | 99.4 | Plus |
4 | 1348131 | 4 | 717652..717932 | 658..938 | 1405 | 100 | Plus |
4 | 1348131 | 4 | 717125..717300 | 484..659 | 880 | 100 | Plus |
4 | 1348131 | 4 | 998621..998710 | 658..747 | 210 | 82.2 | Plus |
Blast to na_te.dros performed 2014-11-27 20:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 2369..2472 | 1271..1375 | 117 | 58.1 | Plus |
BO01245.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 11:53:04 Download gff for
BO01245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RC | 777..2648 | 17..1890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:06 Download gff for
BO01245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 1157..3028 | 17..1890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:58 Download gff for
BO01245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ey-RA | 1157..3028 | 17..1890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:58 Download gff for
BO01245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 717654..717929 | 660..935 | 100 | -> | Plus |
4 | 719274..719628 | 936..1290 | 99 | -> | Plus |
4 | 714044..714512 | 17..485 | 100 | -> | Plus |
4 | 717127..717300 | 486..659 | 100 | -> | Plus |
4 | 720322..720919 | 1291..1890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:06 Download gff for
BO01245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 734670..735138 | 17..485 | 100 | -> | Plus |
arm_4 | 737753..737926 | 486..659 | 100 | -> | Plus |
arm_4 | 738280..738555 | 660..935 | 100 | -> | Plus |
arm_4 | 739900..740254 | 936..1290 | 99 | -> | Plus |
arm_4 | 740948..741545 | 1291..1890 | 99 | | Plus |
BO01245.pep Sequence
Translation from 16 to 1906
> BO01245.pep
MQTATPLNSSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARA
APLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQSWPPRHYSGSWYPTSL
SEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATE
DIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRN
RTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRA
KWRREEKLRNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGS
AGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCTSD
NDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLN
FNSGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAPPSPIPQQ
GDLTPSSLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLGA
SCSGSGYEVLSAYALPPPPMASSSAADSSFSAASSASANVTPHHTIAQES
CPSPCSSASHFGVAHSSGFSSDPISPAVSSYAHMSYNYASSANTMTPSSA
SGTSAHVAPGKQQFFASCFYSPWVASFLDH
BO01245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ey-PD | 898 | CG1464-PD | 275..898 | 1..624 | 3295 | 100 | Plus |
ey-PC | 857 | CG1464-PC | 234..857 | 1..624 | 3295 | 100 | Plus |
ey-PA | 838 | CG1464-PA | 215..838 | 1..624 | 3295 | 100 | Plus |
ey-PB | 624 | CG1464-PB | 1..624 | 1..624 | 3295 | 100 | Plus |
toy-PA | 543 | CG11186-PA | 162..481 | 76..475 | 460 | 36.1 | Plus |