Clone Sequence Records
BO01247.complete Sequence
1912 bp assembled on 2010-04-13
GenBank Submission: KX798031
> BO01247.complete
GAAGTTATCAGTCGACATGCAGCTGCTCTTATCGTCCGTTTGCATGGCGC
TGACCAGCGCGGTGATTGGATTTGCCTACTACCAAAAGCAGCAGTTCTAT
CCTGCGGTGGTCTACATCACCAAATCGAACGCCTCCATGGGGGTCATATA
CATACAATTCTTTGTAATTGTCTTCATGTTCGGCAAGCTGCTAAGCAAGA
TCTTCCTGGGCACTCTGCGTGCCGCAGAGTTTGAGCATCTGCTGGAGCGC
TTTTGGTATGCCCTTACGGAGACCTGCTTGGCCTTTACCGTATTCCGGGA
TGACTTCAATCCGCGCTTTGTGGCCTTGTTCACGGTGCTTCTATTTCTCA
AATCATTCCATTGGCTAGCAGAGGAGCGGGTGGACTTTATGGAGCGTTCC
CCCGTGCTCGGCTGGCTTTTCCACATTCGCGTGGGCAGTCTGCTCACAGT
GCTAGGCATCCTAGACTACGTTCTGTTGATCCATGCCTATAACTCCACTT
TGGTGCGTGGTCCCACCGTGCAGTTGGTCTTTGGCTTTGAATACGCCATC
CTTCTGACCGTAATAGCCAGCACGGCCATCAAGTATGTGCTTCACGCCGC
GGAAATGCGCACGGACACGCCCTGGGAGAACAAGGCCGTGTTCCTGCTAT
ATACAGAGCTGGTCATTGGACTTATTAAGGTGGTCCTGTACATACTGTTT
GTGGTGATCATGGCTAAAATATACGCGCTGCCCATGTTCGTATTCAGGCC
TATGTTCTTTACCATACGCAACTTCCGTAAGGCCCTAAATGACGTGATTA
TGTCCCGGCGTGCCATTCGCAACATGAATACCCTGTATCCCGACGCCACG
CCTGAGGAGCTGCGCCAGTCAGACAACATCTGCATCATTTGTCGCGAGGA
CATGGTCAATCACTCAAAGAAACTGCCCTGCGGCCACATCTTCCATACCA
CATGCCTGCGCTCGTGGTTTCAGCGCCAGCAGACCTGTCCAACCTGCCGT
TTGAACATCCTTCGAACTCCAACCGTGAACTCCACAGCGATGCCACGGCA
AGGCGATGAGGCTGTGGCCGCAGCTGCTGGAAATCCCATTCCGGCTGCAG
CAGGTGTTCAACCGGCTGGTGGTGTGCCTCCTCCAGCTCCAACTGCCGTA
GTTGACGGCAATCAGGCAAGAGCCGACGTCAATGTAGCCGGAGGTCAAGC
CTTGCCGCCAAACTTTGCGGATCTCTTCGGTGATGCCAGCGGCTTGCCCA
ATGGATTGCCTAACCTGGCTGGTTTGCAGATCCCTCCTCCGCCAGTAATG
CCCATGATTTCGCCTTTTATGATACCACCCCACTTCGGCTACCTCACGCC
TCTGCCGCCTCCGCCGATTCCACAGGACCTGACCAATTTTACCGACGAAG
AACTGCGGGCCATGGAGGGCCTTCAACGTGATCATATTGTGCAGCGTCTA
AAGTTGCTGCAAAACATAAACCTAATGCTGGATTCCGCGGGGATAATGAT
GTCCCAGTACCAAAGTTTGTCTGCGCGCCTGCAGCTTACTGCAGTGACGC
CAGCCACCGCGGTCAACGGATCTGCTGATTCTAGCGTCTACGACATGCCC
AGTACCTCGGCCACGGCCATGGCTCAGTTGGAGACTCACCAGGTTACCCC
CACAGCAGCAGCCAGCTCAGCGTCTCCGACGATGCCTGCAGAGAAGGTAA
CCATTGAGGATTTGGGAGCGGACGCAGACGAGGATGATATACCATCGACG
GCCACGGAGGCAGTTAGCATTCCCAACTCCGATGCCGACTTTGAGGAGAA
CTCCTCGGAGCTGGGCGAACTAAGGAAGCGCCGTTTGAAGTTCCTTGAAG
AGCGGAACAAGTCTGCAGCCACTAATGAACGCACGACAGCGGAAGCAAGC
TTTCTAGACCAT
BO01247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip3-RB | 1881 | CG1937-PB | 1..1878 | 17..1894 | 9390 | 100 | Plus |
| sip3-RA | 1881 | CG1937-PA | 1..1878 | 17..1894 | 9390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip3-RB | 2660 | CG1937-RB | 335..2213 | 16..1894 | 9395 | 100 | Plus |
| sip3-RA | 2280 | CG1937-RA | 335..2213 | 16..1894 | 9395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31773097..31773947 | 389..1239 | 4255 | 100 | Plus |
| 3R | 32079331 | 3R | 31774274..31774716 | 1452..1894 | 2215 | 100 | Plus |
| 3R | 32079331 | 3R | 31774005..31774219 | 1239..1453 | 1075 | 100 | Plus |
| 3R | 32079331 | 3R | 31772852..31773042 | 198..388 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 31772553..31772681 | 16..144 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 31772741..31772798 | 142..199 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:55:04 has no hits.
BO01247.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:23 Download gff for
BO01247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-RA | 339..2216 | 17..1896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:15 Download gff for
BO01247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-RA | 336..2213 | 17..1896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:16 Download gff for
BO01247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-RA | 336..2213 | 17..1896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:16 Download gff for
BO01247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31774005..31774219 | 1239..1453 | 100 | -> | Plus |
| 3R | 31772554..31772679 | 17..142 | 100 | -> | Plus |
| 3R | 31772742..31772798 | 143..199 | 100 | -> | Plus |
| 3R | 31772854..31773042 | 200..388 | 100 | -> | Plus |
| 3R | 31773097..31773946 | 389..1238 | 100 | -> | Plus |
| 3R | 31774276..31774716 | 1454..1896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:15 Download gff for
BO01247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27598276..27598401 | 17..142 | 100 | -> | Plus |
| arm_3R | 27598464..27598520 | 143..199 | 100 | -> | Plus |
| arm_3R | 27598576..27598764 | 200..388 | 100 | -> | Plus |
| arm_3R | 27598819..27599668 | 389..1238 | 100 | -> | Plus |
| arm_3R | 27599727..27599941 | 1239..1453 | 100 | -> | Plus |
| arm_3R | 27599998..27600438 | 1454..1896 | 99 | | Plus |
BO01247.5prime Sequence
814 bp (810 high quality bases) assembled on 2005-11-30
> BO01247.5prime
GAAGTTATCAGTCGACATGCAGCTGCTCTTATCGTCCGTTTGCATGGCGC
TGACCAGCGCGGTGATTGGATTTGCCTACTACCAAAAGCAGCAGTTCTAT
CCTGCGGTGGTCTACATCACCAAATCGAACGCCTCCATGGGGGTCATATA
CATACAATTCTTTGTAATTGTCTTCATGTTCGGCAAGCTGCTAAGCAAGA
TCTTCCTGGGCACTCTGCGTGCCGCAGAGTTTGAGCATCTGCTGGAGCGC
TTTTGGTATGCCCTTACGGAGACCTGCTTGGCCTTTACCGTATTCCGGGA
TGACTTCAATCCGCGCTTTGTGGCCTTGTTCACGGTGCTTCTATTTCTCA
AATCATTCCATTGGCTAGCAGAGGAGCGGGTGGACTTTATGGAGCGTTCC
CCCGTGCTCGGCTGGCTTTTCCACATTCGCGTGGGCAGTCTGCTCACAGT
GCTAGGCATCCTAGACTACGTTCTGTTGATCCATGCCTATAACTCCACTT
TGGTGCGTGGTCCCACCGTGCAGTTGGTCTTTGGCTTTGAATACGCCATC
CTTCTGACCGTAATAGCCAGCACGGCCATCAAGTATGTGCTTCACGCCGC
GGAAATGCGCACGGACACGCCCTGGGAGAACAAGGCCGTGTTCCTGCTAT
ATACAGAGCTGGTCATTGGACTTATTAAGGTGGTCCTGTACATACTGTTT
GTGGTGATCATGGCTAANATATACGCGCTGCCCATGTTCGTATTCAGGCC
TATGTTCTTTACCATACGCAACTTCCGTAAGGCCCTAAATGACGTGATTA
TGTCCCGGCGTGCC
BO01247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1937-PA | 1881 | sip3-RA | 1..798 | 17..814 | 3971 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip3-RB | 2660 | CG1937-RB | 335..1133 | 16..814 | 3984 | 99.9 | Plus |
| sip3-RA | 2280 | CG1937-RA | 335..1133 | 16..814 | 3984 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31773097..31773522 | 389..814 | 2119 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31772852..31773042 | 198..388 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 31772553..31772681 | 16..144 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 31772741..31772798 | 142..199 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:12:53 has no hits.
BO01247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:33 Download gff for
BO01247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:25 Download gff for
BO01247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1937-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:59 Download gff for
BO01247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-RA | 335..1133 | 16..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:57 Download gff for
BO01247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-RA | 335..1133 | 16..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:57 Download gff for
BO01247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31772553..31772679 | 16..142 | 100 | -> | Plus |
| 3R | 31772742..31772798 | 143..199 | 100 | -> | Plus |
| 3R | 31772854..31773042 | 200..388 | 100 | -> | Plus |
| 3R | 31773097..31773522 | 389..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:59 Download gff for
BO01247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27598275..27598401 | 16..142 | 100 | -> | Plus |
| arm_3R | 27598464..27598520 | 143..199 | 100 | -> | Plus |
| arm_3R | 27598576..27598764 | 200..388 | 100 | -> | Plus |
| arm_3R | 27598819..27599244 | 389..814 | 99 | | Plus |
BO01247.pep Sequence
Translation from 16 to 1912
> BO01247.pep
MQLLLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFV
IVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPR
FVALFTVLLFLKSFHWLAEERVDFMERSPVLGWLFHIRVGSLLTVLGILD
YVLLIHAYNSTLVRGPTVQLVFGFEYAILLTVIASTAIKYVLHAAEMRTD
TPWENKAVFLLYTELVIGLIKVVLYILFVVIMAKIYALPMFVFRPMFFTI
RNFRKALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHS
KKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQGDEAV
AAAAGNPIPAAAGVQPAGGVPPPAPTAVVDGNQARADVNVAGGQALPPNF
ADLFGDASGLPNGLPNLAGLQIPPPPVMPMISPFMIPPHFGYLTPLPPPP
IPQDLTNFTDEELRAMEGLQRDHIVQRLKLLQNINLMLDSAGIMMSQYQS
LSARLQLTAVTPATAVNGSADSSVYDMPSTSATAMAQLETHQVTPTAAAS
SASPTMPAEKVTIEDLGADADEDDIPSTATEAVSIPNSDADFEENSSELG
ELRKRRLKFLEERNKSAATNERTTAEASFLDH
BO01247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip3-PB | 626 | CG1937-PB | 1..626 | 1..626 | 3216 | 100 | Plus |
| sip3-PA | 626 | CG1937-PA | 1..626 | 1..626 | 3216 | 100 | Plus |
| Trc8-PE | 804 | CG2304-PE | 458..777 | 136..425 | 210 | 24.8 | Plus |
| Trc8-PA | 804 | CG2304-PA | 458..777 | 136..425 | 210 | 24.8 | Plus |
| Trc8-PB | 804 | CG2304-PB | 458..777 | 136..425 | 210 | 24.8 | Plus |
