Clone Sequence Records
BO01249.3prime Sequence
818 bp (815 high quality bases) assembled on 2005-11-30
> BO01249.3prime
ATGGTCTAGAAAGCTTGCAACAACCACTGCTCCTGCCTCCGAACGGCTAA
CTGGTAGATCGGGACAATTCTTCCAGGTGTCCGAAAGCGGATCATAACAT
TCGACAGCATTGATAGTCACTTGGGCTCGGTAGAAGTTTACCTCGCAGGG
CTGATCACCGCCAGCTACGTAGAGCAAGCCATCGGCGGCGACCACGGCAG
GAATGGCTCTGGGCACGTTTAATGCACACACTGTAGTCCACTTATCCTCG
TCGAAGCTGTAGCGTTCCACGGAGCTGAGAATGTCCTGACTGATGCTACT
GCCTCCAACCACATACAAGTAGCGATCCAGAACGGCCACACCCATTTGAC
AGCGAGCTGTTTGCATGCGGGCCAGCTCGTTCCACTCTTTTGTCACTGGA
TTGAAGCTGATTAAATCCGGCAGATGACGGGTTGTTGTTGTGCAGCCACC
GACAATGTAAATGAGACCCTCGAAACTGACCACACCCATGCTGAATCTAG
GCTGCGGCATGCTGCCCATTAATTTCCAGAGATCCTGCTCCGGATCATAG
CACTCCATGGAGCCGCCGATGTCGTCGCCTATCCAACCGCCTACGGCAAA
CAGATTTCCGCCCATGGTGCAAAGACCGAACTCGCAGCGCGGCACAATCA
TCGGGGCAATCGGTTGCCAAACATCGTTCTGTGGATCATAGACCTCGCCA
TTGGCCAGAATCTGTGAACCGCGCTCTCCTCCTACCACATAGATCTTGCC
ATTCAATGCTGATACACCTGGCAGGATGCGTCCCACCTCCATAGGCGCCG
TTTCCGTCCACTCGCGCC
BO01249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-PA | 1884 | CG9426-RA | 1082..1881 | 818..19 | 4000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-RA | 3184 | CG9426-RA | 1513..2312 | 818..19 | 4000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13217676..13218087 | 407..818 | 2060 | 100 | Plus |
| 2L | 23513712 | 2L | 13217361..13217619 | 151..409 | 1295 | 100 | Plus |
| 2L | 23513712 | 2L | 13217162..13217296 | 19..153 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:13:02 has no hits.
BO01249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:35 Download gff for
BO01249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-PA | 1082..1884 | 18..818 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:28 Download gff for
BO01249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-PA | 1082..1884 | 18..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:24 Download gff for
BO01249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 1513..2312 | 19..818 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:36 Download gff for
BO01249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 1513..2312 | 19..818 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:36 Download gff for
BO01249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13217162..13217293 | 19..150 | 100 | <- | Plus |
| 2L | 13217361..13217616 | 151..406 | 100 | <- | Plus |
| 2L | 13217676..13218087 | 407..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:24 Download gff for
BO01249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13217162..13217293 | 19..150 | 100 | <- | Plus |
| arm_2L | 13217361..13217616 | 151..406 | 100 | <- | Plus |
| arm_2L | 13217676..13218087 | 407..818 | 100 | | Plus |
BO01249.5prime Sequence
862 bp (774 high quality bases) assembled on 2005-11-30
> BO01249.5prime
GAAGTTATCAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAAT
ACAATGGCAATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAG
AATCCCACCGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGG
ATCTGGAGCCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCA
ACGCCCAATATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAG
CAGTCCCGTTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAG
TGCCCACCGGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGT
TTCGACCCGAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTG
CACACAATCGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATAC
GGGTCGCTGCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCG
CCGACATGCTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTC
TGCCGCGAGCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGA
GGCCCACAACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACG
CGAATTTCCCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAA
ACTCTACTCTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGA
GTCGCAGGTGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGC
AGCGCCGCTGCTACGTCTTCGATGTTCTGTCCCACGTGCGCATGGGGCTT
GTTCCGGGAAAG
BO01249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-PA | 1884 | CG9426-RA | 1..841 | 17..857 | 4155 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-RA | 3184 | CG9426-RA | 428..1277 | 13..862 | 4190 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13219037..13219496 | 472..13 | 2285 | 99.8 | Minus |
| 2L | 23513712 | 2L | 13218783..13218979 | 666..470 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 13218323..13218521 | 862..664 | 950 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:14:32 has no hits.
BO01249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:36 Download gff for
BO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:30 Download gff for
BO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:27 Download gff for
BO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 428..1277 | 13..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:59 Download gff for
BO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 428..1277 | 13..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:59 Download gff for
BO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13218323..13218520 | 665..862 | 98 | <- | Minus |
| 2L | 13218785..13218976 | 473..664 | 100 | <- | Minus |
| 2L | 13219037..13219496 | 13..472 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:27 Download gff for
BO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13218323..13218520 | 665..862 | 98 | <- | Minus |
| arm_2L | 13218785..13218976 | 473..664 | 100 | <- | Minus |
| arm_2L | 13219037..13219496 | 13..472 | 99 | | Minus |
BO01249.complete Sequence
1915 bp (1915 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629454
> BO01249.complete
GAAGTTATCAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAAT
ACAATGGCAATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAG
AATCCCACCGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGG
ATCTGGAGCCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCA
ACGCCCAATATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAG
CAGTCCCGTTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAG
TGCCCACCGGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGT
TTCGACCCGAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTG
CACACAATCGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATAC
GGGTCGCTGCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCG
CCGACATGCTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTC
TGCCGCGAGCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGA
GGCCCACAACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACG
CGAATTTCCCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAA
ACTCTACTCTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGA
GTCGCAGGTGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGC
AGCGCCGCTGCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTT
GTTCCGGTAAAGGTGATCGACAAGGCTCTGAAGGACGACTGTCGCGACAT
GTCCGTGAAGATAGCCCTGCGCTCCATTTGCCGGGACATTGCGTCCAAGC
GCGGACAATTGGTGCCGCTGCGGGTATGTCCGCGTCAGCTGGCCAAGAAG
AACATATATATCATTGGTGGATCTCATCGGGATACGCCGCGAACCTGGAA
CTCGGCCGACTGCATCTTCGAGACGGTGGCCAAATTCGATATATTCCGGC
GCGAGTGGACGGAAACGGCGCCTATGGAGGTGGGACGCATCCTGCCAGGT
GTATCAGCATTGAATGGCAAGATCTATGTGGTAGGAGGAGAGCGCGGTTC
ACAGATTCTGGCCAATGGCGAGGTCTATGATCCACAGAACGATGTTTGGC
AACCGATTGCCCCGATGATTGTGCCGCGCTGCGAGTTCGGTCTTTGCACC
ATGGGCGGAAATCTGTTTGCCGTAGGCGGTTGGATAGGCGACGACATCGG
CGGCTCCATGGAGTGCTATGATCCGGAGCAGGATCTCTGGAAATTAATGG
GCAGCATGCCGCAGCCTAGATTCAGCATGGGTGTGGTCAGTTTCGAGGGT
CTCATTTACATTGTCGGTGGCTGCACAACAACAACCCGTCATCTGCCGGA
TTTAATCAGCTTCAATCCAGTGACAAAAGAGTGGAACGAGCTGGCCCGCA
TGCAAACAGCTCGCTGTCAAATGGGTGTGGCCGTTCTGGATCGCTACTTG
TATGTGGTTGGAGGCAGTAGCATCAGTCAGGACATTCTCAGCTCCGTGGA
ACGCTACAGCTTCGACGAGGATAAGTGGACTACAGTGTGTGCATTAAACG
TGCCCAGAGCCATTCCTGCCGTGGTCGCCGCCGATGGCTTGCTCTACGTA
GCTGGCGGTGATCAGCCCTGCGAGGTAAACTTCTACCGAGCCCAAGTGAC
TATCAATGCTGTCGAATGTTATGATCCGCTTTCGGACACCTGGAAGAATT
GTCCCGATCTACCAGTTAGCCGTTCGGAGGCAGGAGCAGTGGTTGTTGCA
AGCTTTCTAGACCAT
BO01249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-RA | 1884 | CG9426-PA | 1..1881 | 17..1897 | 9405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-RA | 3184 | CG9426-RA | 428..2312 | 13..1897 | 9410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13217676..13218521 | 1509..664 | 4230 | 100 | Minus |
| 2L | 23513712 | 2L | 13219037..13219496 | 472..13 | 2285 | 99.8 | Minus |
| 2L | 23513712 | 2L | 13217361..13217619 | 1765..1507 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 13218783..13218979 | 666..470 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 13217162..13217296 | 1897..1763 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:16:11 has no hits.
BO01249.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:12 Download gff for
BO01249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 1..1884 | 17..1898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:35 Download gff for
BO01249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 438..2322 | 13..1897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:28 Download gff for
BO01249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 432..2312 | 17..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:12 Download gff for
BO01249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 438..2322 | 13..1897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:09 Download gff for
BO01249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 432..2312 | 17..1899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:09 Download gff for
BO01249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13217160..13217293 | 1766..1899 | 98 | <- | Minus |
| 2L | 13217361..13217616 | 1510..1765 | 100 | <- | Minus |
| 2L | 13217676..13218520 | 665..1509 | 100 | <- | Minus |
| 2L | 13218785..13218976 | 473..664 | 100 | <- | Minus |
| 2L | 13219037..13219492 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:28 Download gff for
BO01249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13217160..13217293 | 1766..1899 | 98 | <- | Minus |
| arm_2L | 13217361..13217616 | 1510..1765 | 100 | <- | Minus |
| arm_2L | 13217676..13218520 | 665..1509 | 100 | <- | Minus |
| arm_2L | 13218785..13218976 | 473..664 | 100 | <- | Minus |
| arm_2L | 13219037..13219492 | 17..472 | 100 | | Minus |
BO01249.pep Sequence
Translation from 16 to 1915
> BO01249.pep
MPPLKTYQIHEYNGNTSPNANANQNANQNPTGGGGDGDFFGQNLGSGATA
ASHRTNLPSYCNAQYPFKVLSNLNQLREQSRFCDVEIIAGMATLSAHRAV
LSAASAYFEAMFRPELGLNEVKQKSVVLHTIDGDILHILLDFIYTGRCEI
TQSNVQELLAAADMLQLNEVVDGCCEFLCRELHASNALGILRFAEAHNCE
SLAKSALNFVHANFPAVTLEDEFLETPQTLLSQLLNSELLRVDSESQVFQ
AALRWIKHDVTQRRCYVFDVLSHVRMALVPVKVIDKALKDDCRDMSVKIA
LRSICRDIASKRGQLVPLRVCPRQLAKKNIYIIGGSHRDTPRTWNSADCI
FETVAKFDIFRREWTETAPMEVGRILPGVSALNGKIYVVGGERGSQILAN
GEVYDPQNDVWQPIAPMIVPRCEFGLCTMGGNLFAVGGWIGDDIGGSMEC
YDPEQDLWKLMGSMPQPRFSMGVVSFEGLIYIVGGCTTTTRHLPDLISFN
PVTKEWNELARMQTARCQMGVAVLDRYLYVVGGSSISQDILSSVERYSFD
EDKWTTVCALNVPRAIPAVVAADGLLYVAGGDQPCEVNFYRAQVTINAVE
CYDPLSDTWKNCPDLPVSRSEAGAVVVASFLDH
BO01249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-PA | 627 | CG9426-PA | 1..627 | 1..627 | 3305 | 100 | Plus |
| kel-PA | 689 | CG7210-PA | 128..685 | 54..627 | 795 | 33 | Plus |
| kel-PB | 1477 | CG7210-PB | 128..685 | 54..627 | 795 | 33 | Plus |
| dbo-PB | 620 | CG6224-PB | 7..603 | 13..627 | 782 | 32.8 | Plus |
| dbo-PA | 623 | CG6224-PA | 7..603 | 13..627 | 782 | 32.8 | Plus |
| dbo-PB | 620 | CG6224-PB | 321..513 | 430..631 | 286 | 34.5 | Plus |
| dbo-PA | 623 | CG6224-PA | 321..513 | 430..631 | 286 | 34.5 | Plus |
| kel-PA | 689 | CG7210-PA | 394..594 | 419..631 | 220 | 31.5 | Plus |
