Clone Sequence Records
BO01255.3prime Sequence
832 bp (802 high quality bases) assembled on 2005-11-30
> BO01255.3prime
ATGGTCTAGAAAGCTTGCGGCCGTGTTACTTGTCAGCGAGGCCATCAGAA
ACTCCATTTTGTTGAGAAAGCTCTTGCCTTCGATTTTGTCGAACCTCACC
TCCTTGAATGTGCCTCCCAGATTCTCCCATAGCTTTTCCGGCACCAGTGG
ACTGGGAAAGAAATCCTGTCGTGGACTTCTCGCTATATAAACTTTAACAT
CTATCTGCGGATCGCAGCGAATCTGAACGGCAATCATGCGATCGCTATTG
GGAGATGCCAGAAGGCAGGAACTGGCATTTCCCAGCGGCTCCACCTTGCC
GATACCCAAGTGGTTGCTGTTCGACAGCACGGTCCAGGACATGCAGCGCG
CTAGACTGATCAGGCAGGAGATCTGGTGAGAGTTGATCTGGCAGAGGATC
AGGTCGCGAAGTTCCTGCGGCTCGTAGGACAGTCGCATAACGCGTCCATC
GCGACAAATGCATTTAAGAGAGCGCTCCTTGACGTGAATGACCAGCGAGG
TGCGTCCAATGGCATCGTAACCGTGCGTTACAATGTTAATCTTCACACAC
GACATGGTTGGACTGTTCATGGCATTCCAATGCGACACTATCTGCGGGTC
CTTCACATCCCTGGCCAGCGTATCGAGCACATATTGTGTTCGCTTTCGCA
TGAAAATGTGCTGCGCCTGGGCGATGATCTGTTCGAGTATGGTCTGTGAC
TTGGTCATGTCCAACAACGTTTCCCGATCGGCGGCCATCGGACCGGCTAG
CATGCGCTTCTTAGTTGGTCCCAGTGGTGCACTGGCCGGATGGGGAAAGG
GATGGTGTGAGTTTTTGTAGTGCACCTCGCGC
BO01255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7957-PA | 1929 | MED17-RA | 1113..1926 | 832..19 | 3945 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 2060 | CG7957-RA | 1171..1984 | 832..19 | 3995 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18190313..18191050 | 832..95 | 3615 | 99.3 | Minus |
| 3R | 32079331 | 3R | 18191107..18191189 | 101..19 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:47:19 has no hits.
BO01255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:43 Download gff for
BO01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-PA | 1113..1929 | 16..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:38 Download gff for
BO01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7957-PA | 1113..1929 | 16..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:47 Download gff for
BO01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 1171..1988 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:51 Download gff for
BO01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 1171..1988 | 15..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:51 Download gff for
BO01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18190313..18191045 | 100..832 | 99 | -> | Minus |
| 3R | 18191109..18191198 | 13..99 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:47 Download gff for
BO01255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14016035..14016767 | 100..832 | 99 | -> | Minus |
| arm_3R | 14016831..14016920 | 13..99 | 94 | -> | Minus |
BO01255.5prime Sequence
806 bp (721 high quality bases) assembled on 2005-11-30
> BO01255.5prime
GAAGTTATCAGTCGACATGTCGAATTCCGTGAATATATCAGTGGAAACGA
CTTGCGAGAACCAGATACGTGAGATTGGCTACGATGGCACCGAATTGTAT
CAGCCGCCGCCGACTTTGTCGGAAAGTCTGGCGAAATGTGCGGCGCGCAT
AGACTTTAGCAAAACGTCGCTGGACGACCTCAAGAAGGAGGAGAAGTCGG
CGGCAGCGGCCGCCGACGAGGACAAAGACGCCACTCAGTTCCAAGAGAGC
CTGTGGCCCTGGGATGCGGTGCGCAACAAGCTGAAGGATGCGCTCACTGA
GATATGTGTGCTGTCCGATGTGATTTCCATTGCCAAGGACAAGCGCTATC
TAGTGCTCGATCCACTGCTCGAGGAGGCTGACGACACCAAGCCCATTGTG
CAGGTGTACAGTCGCAAGAAAGCCATCTCTCAGGCAGCCCAAGTGCTCCT
AAGTGGCGCTGAACGCCTGCGGAACGCGCACAGCGAGCAGCGCAATCGCA
ATGTCTCAGATTTCCACATCGAACTACTGCGCCTGCGACAGAACTGGCGC
CTGAAGAAGGTGTCCAATGCGATTATCGGAGATCTCAGCTACCGCACCGC
GGGCTCCAAGTTTGGCATGAGCGGCACCTTCGAGGTGACCAAAGCTGAAG
AGACCGGTGATGAAGACACAGCCAGCTCATCCAACAGTAGCAGTAGCGTA
TCCGGCAACAATGGCATGCAACTTAAAGCCAGCTCCGCATTGCGTGTGAT
TGTTCCAGCGGAACTGCANGGTGTCGCCTACATAAAGGTGATCACACAGA
AGGATC
BO01255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7957-PA | 1929 | MED17-RA | 1..790 | 17..806 | 3581 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 2060 | CG7957-RA | 59..848 | 17..806 | 3729 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18189290..18189990 | 106..806 | 3284 | 97.9 | Plus |
| 3R | 32079331 | 3R | 18189130..18189219 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:29:30 has no hits.
BO01255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:44 Download gff for
BO01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-PA | 1..790 | 17..806 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:40 Download gff for
BO01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7957-PA | 1..790 | 17..806 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:34:00 Download gff for
BO01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..848 | 17..806 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:19 Download gff for
BO01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..848 | 17..806 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:19 Download gff for
BO01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18189130..18189218 | 17..105 | 100 | -> | Plus |
| 3R | 18189290..18189990 | 106..806 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:34:00 Download gff for
BO01255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14014852..14014940 | 17..105 | 100 | -> | Plus |
| arm_3R | 14015012..14015712 | 106..806 | 97 | | Plus |
BO01255.complete Sequence
1960 bp (1960 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629455
> BO01255.complete
GAAGTTATCAGTCGACATGTCGAATTCCGTGAATATATCAGTGGAAACGA
CTTGCGAGAACCAGATACGTGAGATTGGCTACGATGGCACCGAATTGTAT
CAGCCGCCGCCGACTTTGTCGGAAAGTCTGGCGAAATGTGCGGCGCGCAT
AGACTTTAGCAAAACGTCGCTGGACGACCTCAAGAAGGAGGAGAAGTCGG
CGGCAGCGGCCGCCGACGAGGACAAAGACGCCACTCAGTTCCAAGAGAGC
CTGTGGCCCTGGGATGCGGTGCGCAACAAGCTGAAGGATGCGCTCACTGA
GATATGTGTGCTGTCCGATGTGATTTCCATTGCCAAGGACAAGCGCTATC
TAGTGCTCGATCCACTGCTCGAGGAGGCTGACGACACCAAGCCCATTGTG
CAGGTGTACAGTCGCAAGAAAGCCATCTCTCAGGCAGCCCAAGTGCTCCT
AAGTGGCGCTGAACGCCTGCGGAACGCGCACAGCGAGCAGCGCAATCGCA
ATGTCTCAGATTTCCACATCGAACTACTGCGCCTGCGACAGAACTGGCGC
CTGAAGAAGGTGTCCAATGCGATTATCGGAGATCTCAGCTACCGCACCGC
GGGCTCCAAGTTTGGCATGAGCGGCACCTTCGAGGTGACCAAAGCTGAAG
AGACCGGTGATGAAGACACAGCCAGCTCATCCAACAGTAGCAGTAGCGTA
TCCGGCAACAATGGCATGCAACTTAAAGCCAGCTCCGCATTGCGTGTGAT
TGTTCCAGCGGAACTGCAGGGTGTCGCCTACATAAAGGTGATCACACAGA
AGGATCAGGAGGATTTGTGCACCGCTCAGCTGAATCTGATGGGTCACGGA
CCCAATATAACTGCCCAGGTGGGTGTCTGGCAGAAGACACTGGAGTTCGC
CCAGAATGTGCTCTTCTGCAAGGAGCTATTCGCTCAGTTGGCACGTGAAG
CTATCCAATTGCAAGCACCAATTCCACATGTGGTCATCGGCAACCAAATT
CGCGCCACTCTGCTGCCTAACATTCAACTTATTATCTCGTTGTGCCACTC
AACCACCTTCGATTCCAGCCAGCCGGCGCCAATTAACGATCATGACCATG
TTCTGGAACACTCGCTGCATCAGCTTCTGCGCGAGGTGCACTACAAAAAC
TCACACCATCCCTTTCCCCATCCGGCCAGTGCACCACTGGGACCAACTAA
GAAGCGCATGCTAGCCGGTCCGATGGCCGCCGATCGGGAAACGTTGTTGG
ACATGACCAAGTCACAGACCATACTCGAACAGATCATCGCCCAGGCGCAG
CACATTTTCATGCGAAAGCGAACACAATATGTGCTCGATACGCTGGCCAG
GGATGTGAAGGACCCGCAGATAGTGTCGCATTGGAATGCCATGAACAGTC
CAACCATGTCGTGTGTGAAGATTAACATTGTAACGCACGGTTACGATGCC
ATTGGACGCACCTCGCTGGTCATTCACGTCAAGGAGCGCTCTCTTAAATG
CATTTGTCGCGATGGACGCGTTATGCGACTGTCCTACGAGCCGCAGGAAC
TTCGCGACCTGATCCTCTGCCAGATCAACTCTCACCAGATCTCCTGCCTG
ATCAGTCTAGCGCGCTGCATGTCCTGGACCGTGCTGTCGAACAGCAACCA
CTTGGGTATCGGCAAGGTGGAGCCGCTGGGAAATGCCAGTTCCTGCCTTC
TGGCATCTCCCAATAGCGATCGCATGATTGCCGTTCAGATTCGCTGCGAT
CCGCAGATAGATGTTAAAGTTTATATAGCGAGAAGTCCACGACAGGATTT
CTTTCCCAGTCCACTGGTGCCGGAAAAGCTATGGGAGAATCTGGGAGGCA
CATTCAAGGAGGTGAGGTTCGACAAAATCGAAGGCAAGAGCTTTCTCAAC
AAAATGGAGTTTCTGATGGCCTCGCTGACAAGTAACACGGCCGCAAGCTT
TCTAGACCAT
BO01255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 1929 | CG7957-PA | 1..1926 | 17..1942 | 9315 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-RA | 2060 | CG7957-RA | 59..1984 | 17..1942 | 9315 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18189290..18191050 | 106..1866 | 8490 | 98.8 | Plus |
| 3R | 32079331 | 3R | 18189130..18189219 | 17..106 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 18191107..18191189 | 1860..1942 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:10:34 has no hits.
BO01255.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:13 Download gff for
BO01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 1..1929 | 17..1945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:16 Download gff for
BO01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 66..1995 | 17..1946 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:31 Download gff for
BO01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..1984 | 17..1944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:16 Download gff for
BO01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 66..1995 | 17..1946 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:55 Download gff for
BO01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED17-RA | 59..1984 | 17..1944 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:55 Download gff for
BO01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18189130..18189218 | 17..105 | 100 | -> | Plus |
| 3R | 18189290..18191045 | 106..1861 | 98 | -> | Plus |
| 3R | 18191109..18191189 | 1862..1944 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:31 Download gff for
BO01255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14014852..14014940 | 17..105 | 100 | -> | Plus |
| arm_3R | 14015012..14016767 | 106..1861 | 98 | -> | Plus |
| arm_3R | 14016831..14016911 | 1862..1944 | 97 | | Plus |
BO01255.pep Sequence
Translation from 16 to 1960
> BO01255.pep
MSNSVNISVETTCENQIREIGYDGTELYQPPPTLSESLAKCAARIDFSKT
SLDDLKKEEKSAAAAADEDKDATQFQESLWPWDAVRNKLKDALTEICVLS
DVISIAKDKRYLVLDPLLEEADDTKPIVQVYSRKKAISQAAQVLLSGAER
LRNAHSEQRNRNVSDFHIELLRLRQNWRLKKVSNAIIGDLSYRTAGSKFG
MSGTFEVTKAEETGDEDTASSSNSSSSVSGNNGMQLKASSALRVIVPAEL
QGVAYIKVITQKDQEDLCTAQLNLMGHGPNITAQVGVWQKTLEFAQNVLF
CKELFAQLAREAIQLQAPIPHVVIGNQIRATLLPNIQLIISLCHSTTFDS
SQPAPINDHDHVLEHSLHQLLREVHYKNSHHPFPHPASAPLGPTKKRMLA
GPMAADRETLLDMTKSQTILEQIIAQAQHIFMRKRTQYVLDTLARDVKDP
QIVSHWNAMNSPTMSCVKINIVTHGYDAIGRTSLVIHVKERSLKCICRDG
RVMRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSNSNHLGIGK
VEPLGNASSCLLASPNSDRMIAVQIRCDPQIDVKVYIARSPRQDFFPSPL
VPEKLWENLGGTFKEVRFDKIEGKSFLNKMEFLMASLTSNTAASFLDH
BO01255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED17-PA | 642 | CG7957-PA | 1..642 | 1..642 | 3294 | 100 | Plus |
