Clone Sequence Records
BO01262.3prime Sequence
879 bp (687 high quality bases) assembled on 2005-11-30
> BO01262.3prime
ATGGTCTAGAAAGCTTGCGACCTTAGTGGTTAGATCCAAGGCATTCGAGG
TGGCCACTTTGACGGGGGCTTCCAACCTCAGACGTTTTCCATTCTCACTG
CTGGCCTCTATGAGTTCGTCCAGTTTCCTCTTGATCGTTTCACTGGCCTC
GCTATCGCTTAGGATACTATTATTATTATTATTATTATTGTTATTGTTGT
TGCTGATACTGTTGTTGTTATTGTGGGTATTTTCAATGCTGGTCTTTGCT
GTCTCTGTGGTGCTGGAGTGATCTTCCTCTATCTCCGGATCAGCCGTTTC
TCGAACTGATATCTCCTCTTCAGGCGTTACTTTCAGATCCTCATCGTCAT
CATCTGTATCGTTCTTTTCTACATCGCTAGAGATCTCGGTTTCTGGTTCG
ATTTCTGGGCTACTACTTTTACTGCTCAGGGAACTGCCGGTGGTCTTCAT
GCTCAGATCAATGGGATTATCTTGACCGGGACTGGGTCTGGGATCCTCGC
CGGCTGGGGTTCGCTCTTCTTGTTGAGCGGGTGAGTGGGGTGGCGTCATG
GACACCACCAGATCCTCCTCCTCATCGTCGTGCTCGGCGCCATCAATAAT
TCCATCCGCTCTCGCCTCGTCGTCCTCTTCGTTCTGGCGACTTTTCACTC
TCTCCCTGCCACTTTCCGAGTTTGGTGTGACCAGAGCTGAAATTGAGTAA
TCCTGCTTGGAGTGTGGCGGTAGTTTGGTGGTCGGCGGAGGACTTTGTTG
CTGGGACTTGAGCACAGCGTCTAAATAGAAGCGTTTGGTTAGCTCATCGG
CAGCACCACCATTTCGTAGCAGGTGGTTGTTGTTCGCATGGGTACTTGGA
CTTCTGGCTGGTGCTGGCTGATCCTCTTC
BO01262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4761-PA | 1944 | knrl-RA | 1147..1941 | 813..19 | 3975 | 100 | Minus |
| CG4761-PA | 1944 | knrl-RA | 1081..1143 | 879..817 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-RB | 2925 | CG4761-RB | 2045..2905 | 879..19 | 4260 | 99.8 | Minus |
| knrl-RA | 3909 | CG4761-RA | 2045..2905 | 879..19 | 4260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20598145..20599005 | 19..879 | 4260 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 16:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib4 | 2656 | transib4 TRANSIB4 2656bp | 322..379 | 184..237 | 109 | 72.9 | Plus |
BO01262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:51 Download gff for
BO01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-PA | 1081..1944 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:50 Download gff for
BO01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4761-PA | 1081..1944 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:02 Download gff for
BO01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 2045..2909 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:05 Download gff for
BO01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 2045..2909 | 15..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:05 Download gff for
BO01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20598140..20599005 | 15..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:02 Download gff for
BO01262.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20591240..20592105 | 15..879 | 99 | | Plus |
BO01262.5prime Sequence
735 bp (734 high quality bases) assembled on 2005-11-30
> BO01262.5prime
GAAGTTATCAGTCGACATGATGAATCAGGATAATCCATATGCGATGAATC
AGACGTGCAAGGTGTGTGGAGAGCCGGCGGCTGGATTCCATTTCGGAGCC
TTTACATGCGAGGGCTGCAAGTCCTTCTTCGGCCGATCGTACAACAATCT
GTCGTCGATATCCGACTGCAAGAACAACGGCGAGTGCATCATCAACAAGA
AGAACCGAACCGCCTGCAAGGCGTGCCGTCTGAAGAAGTGCCTCATGGTG
GGCATGTCGAAGAGTGGATCCCGATATGGTCGTCGCTCCAACTGGTTCAA
GATCCACTGTCTGCTGCAGGAGCAGCAGCAGCAGGCGGTGGCTGCGATGG
CGGCGCACCACAATAGCCAGCAGGCGGGTGGTGGAAGTTCCGGTGGATCG
GGCGGTGGTCAAGGAATGCCCAACGGGGTCAAGGGCATGTCGGGTGTACC
CCCACCGGCGGCTGCAGCAGCTGCTCTGGGAATGCTCGGGCATCCTGGTG
GTTATCCGGGTCTGTATGCCGTTGCCAATGCTGGCGGCTCGTCACGGAGT
AAAGAGGAGCTAATGATGTTGGGATTGGATGGCAGCGTGGAGTACGGCTC
CCATAAACATCCGGTGGTGGCATCACCCTCCGTAAGTTCCCCGGATTCCC
ACAACTCCGACAGCTCTGTGGAGGTGAGTTCGGTGCGAGGCAACCCACTC
CTACACTTGGGCGGAAAATCCAATTCGGGAGGATC
BO01262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4761-PA | 1944 | knrl-RA | 1..719 | 17..735 | 3595 | 100 | Plus |
| CG4717-PA | 1290 | kni-RA | 205..281 | 248..324 | 235 | 92.2 | Plus |
| CG7383-PB | 1122 | eg-RB | 193..285 | 236..328 | 190 | 88.1 | Plus |
| CG7383-PA | 1122 | eg-RA | 193..285 | 236..328 | 190 | 88.1 | Plus |
| CG4717-PA | 1290 | kni-RA | 1..104 | 44..147 | 170 | 86.5 | Plus |
| CG4717-PA | 1290 | kni-RA | 124..185 | 167..228 | 160 | 90.3 | Plus |
| CG7383-PB | 1122 | eg-RB | 148..185 | 191..228 | 140 | 94.7 | Plus |
| CG7383-PA | 1122 | eg-RA | 148..185 | 191..228 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-RB | 2925 | CG4761-RB | 965..1683 | 17..735 | 3595 | 100 | Plus |
| knrl-RA | 3909 | CG4761-RA | 965..1683 | 17..735 | 3595 | 100 | Plus |
| kni-RB | 1911 | CG4717-RB | 115..396 | 43..324 | 735 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20599367..20599982 | 735..120 | 3080 | 100 | Minus |
| 3L | 28110227 | 3L | 20693845..20694049 | 324..120 | 515 | 83.4 | Minus |
| 3L | 28110227 | 3L | 21816276..21816484 | 120..328 | 475 | 81.8 | Plus |
| 3L | 28110227 | 3L | 20602193..20602271 | 121..43 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 20694263..20694341 | 121..43 | 230 | 86.1 | Minus |
| 3L | 28110227 | 3L | 21814778..21814856 | 43..121 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-04 18:49:15 has no hits.
BO01262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:52 Download gff for
BO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-PA | 1..719 | 17..735 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:51 Download gff for
BO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4761-PA | 1..719 | 17..735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:38 Download gff for
BO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 961..1683 | 9..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:41 Download gff for
BO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 961..1683 | 9..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:41 Download gff for
BO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20599367..20599980 | 122..735 | 100 | <- | Minus |
| 3L | 20602193..20602270 | 44..121 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:38 Download gff for
BO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20592467..20593080 | 122..735 | 100 | <- | Minus |
| arm_3L | 20595293..20595370 | 44..121 | 100 | <- | Minus |
BO01262.complete Sequence
1975 bp (1975 high quality bases) assembled on 2006-06-06
GenBank Submission: FJ629456
> BO01262.complete
GAAGTTATCAGTCGACATGATGAATCAGGATAATCCATATGCGATGAATC
AGACGTGCAAGGTGTGTGGAGAGCCGGCGGCTGGATTCCATTTCGGAGCC
TTTACATGCGAGGGCTGCAAGTCCTTCTTCGGCCGATCGTACAACAATCT
GTCGTCGATATCCGACTGCAAGAACAACGGCGAGTGCATCATCAACAAGA
AGAACCGAACCGCCTGCAAGGCGTGCCGTCTGAAGAAGTGCCTCATGGTG
GGCATGTCGAAGAGTGGATCCCGATATGGTCGTCGCTCCAACTGGTTCAA
GATCCACTGTCTGCTGCAGGAGCAGCAGCAGCAGGCGGTGGCTGCGATGG
CGGCGCACCACAATAGCCAGCAGGCGGGTGGTGGAAGTTCCGGTGGATCG
GGCGGTGGTCAAGGAATGCCCAACGGGGTCAAGGGCATGTCGGGTGTACC
CCCACCGGCGGCTGCAGCAGCTGCTCTGGGAATGCTCGGGCATCCTGGTG
GTTATCCGGGTCTGTATGCCGTTGCCAATGCTGGCGGCTCGTCACGGAGT
AAAGAGGAGCTAATGATGTTGGGATTGGATGGCAGCGTGGAGTACGGCTC
CCATAAACATCCGGTGGTGGCATCACCCTCCGTAAGTTCCCCGGATTCCC
ACAACTCCGACAGCTCTGTGGAGGTGAGTTCGGTGCGAGGCAACCCACTC
CTACACTTGGGCGGAAAATCCAATTCGGGAGGATCTTCAAGTGGTGCCGA
TGGCAGTCATTCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGACGCCCG
GCAGACCGCCACAGATGCGCAAGGATTTGTCGCCATTCCTGCCGCTGCCC
TTCCCAGGCCTAGCATCAATGCCCGTGATGCCACCACCCGCGTTCCTGCC
TCCCTCGCACCTACTCTTCCCCGGCTACCACCCCGCCCTGTACTCGCACC
ACCAGGGCTTGCTGAAGCCAACGCCAGAGCAACAACAGGCAGCGGTGGCT
GCGGCGGCCGTGCAACATCTATTCAACTCCAGTGGTGCAGGCCAGCGTTT
CGCACCGGGCACTTCACCATTTGCCAACCACCAGCAGCACCACAAGGAAG
AGGATCAGCCAGCACCAGCCAGAAGTCCAAGTACCCATGCGAACAACAAC
CACCTGCTAACGAATGGTGGTGCTGCCGATGAGCTAACCAAACGCTTCTA
TTTAGACGCTGTGCTCAAGTCCCAGCAACAAAGTCCTCCGCCGACCACCA
AACTACCGCCACACTCCAAGCAGGATTACTCAATTTCAGCTCTGGTCACA
CCAAACTCGGAAAGTGGCAGGGAGAGAGTGAAAAGTCGCCAGAACGAAGA
GGACGACGAGGCGAGAGCGGATGGAATTATTGATGGCGCCGAGCACGACG
ATGAGGAGGAGGATCTGGTGGTGTCCATGACGCCACCCCACTCACCCGCT
CAACAAGAAGAGCGAACCCCAGCCGGCGAGGATCCCAGACCCAGTCCCGG
TCAAGATAATCCCATTGATCTGAGCATGAAGACCACCGGCAGTTCCCTGA
GCAGTAAAAGTAGTAGCCCAGAAATCGAACCAGAAACCGAGATCTCTAGC
GATGTAGAAAAGAACGATACAGATGATGACGATGAGGATCTGAAAGTAAC
GCCTGAAGAGGAGATATCAGTTCGAGAAACGGCTGATCCGGAGATAGAGG
AAGATCACTCCAGCACCACAGAGACAGCAAAGACCAGCATTGAAAATACC
CACAATAACAACAACAGTATCAGCAACAACAATAACAATAATAATAATAA
TAATAATAGTATCCTAAGCGATAGCGAGGCCAGTGAAACGATCAAGAGGA
AACTGGACGAACTCATAGAGGCCAGCAGTGAGAATGGAAAACGTCTGAGG
TTGGAAGCCCCCGTCAAAGTGGCCACCTCGAATGCCTTGGATCTAACCAC
TAAGGTCGCAAGCTTTCTAGACCAT
BO01262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-RB | 1944 | CG4761-PB | 1..1941 | 17..1957 | 9705 | 100 | Plus |
| knrl-RA | 1944 | CG4761-PA | 1..1941 | 17..1957 | 9705 | 100 | Plus |
| kni-RB | 1305 | CG4717-PB | 15..296 | 43..324 | 735 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-RB | 2925 | CG4761-RB | 965..2905 | 17..1957 | 9705 | 100 | Plus |
| knrl-RA | 3909 | CG4761-RA | 965..2905 | 17..1957 | 9705 | 100 | Plus |
| kni-RB | 1911 | CG4717-RB | 115..396 | 43..324 | 735 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20598145..20599982 | 1957..120 | 9190 | 100 | Minus |
| 3L | 28110227 | 3L | 20693845..20694049 | 324..120 | 515 | 83.4 | Minus |
| 3L | 28110227 | 3L | 21816276..21816484 | 120..328 | 475 | 81.8 | Plus |
| 3L | 28110227 | 3L | 20602193..20602271 | 121..43 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 20694263..20694341 | 121..43 | 230 | 86.1 | Minus |
| 3L | 28110227 | 3L | 21814778..21814856 | 43..121 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:15:43 has no hits.
BO01262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:29 Download gff for
BO01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 1..1944 | 17..1960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:19 Download gff for
BO01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 842..2782 | 17..1959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:49 Download gff for
BO01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 965..2905 | 17..1959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:30 Download gff for
BO01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 838..2786 | 9..1961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:16 Download gff for
BO01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 965..2905 | 17..1959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:16 Download gff for
BO01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20602193..20602270 | 44..121 | 100 | <- | Minus |
| 3L | 20617388..20617414 | 17..43 | 100 | | Minus |
| 3L | 20598142..20599980 | 122..1959 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:49 Download gff for
BO01262.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20591242..20593080 | 122..1959 | 99 | <- | Minus |
| arm_3L | 20595293..20595370 | 44..121 | 100 | <- | Minus |
| arm_3L | 20610488..20610514 | 17..43 | 100 | | Minus |
BO01262.pep Sequence
Translation from 16 to 1975
> BO01262.pep
MMNQDNPYAMNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLSSISD
CKNNGECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHCLL
QEQQQQAVAAMAAHHNSQQAGGGSSGGSGGGQGMPNGVKGMSGVPPPAAA
AAALGMLGHPGGYPGLYAVANAGGSSRSKEELMMLGLDGSVEYGSHKHPV
VASPSVSSPDSHNSDSSVEVSSVRGNPLLHLGGKSNSGGSSSGADGSHSG
GGGGGGGGVTPGRPPQMRKDLSPFLPLPFPGLASMPVMPPPAFLPPSHLL
FPGYHPALYSHHQGLLKPTPEQQQAAVAAAAVQHLFNSSGAGQRFAPGTS
PFANHQQHHKEEDQPAPARSPSTHANNNHLLTNGGAADELTKRFYLDAVL
KSQQQSPPPTTKLPPHSKQDYSISALVTPNSESGRERVKSRQNEEDDEAR
ADGIIDGAEHDDEEEDLVVSMTPPHSPAQQEERTPAGEDPRPSPGQDNPI
DLSMKTTGSSLSSKSSSPEIEPETEISSDVEKNDTDDDDEDLKVTPEEEI
SVRETADPEIEEDHSSTTETAKTSIENTHNNNNSISNNNNNNNNNNNSIL
SDSEASETIKRKLDELIEASSENGKRLRLEAPVKVATSNALDLTTKVASF
LDH
BO01262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-PB | 647 | CG4761-PB | 1..647 | 1..647 | 3415 | 100 | Plus |
| knrl-PA | 647 | CG4761-PA | 1..647 | 1..647 | 3415 | 100 | Plus |
| eg-PA | 373 | CG7383-PA | 1..114 | 10..134 | 516 | 74.4 | Plus |
| eg-PB | 373 | CG7383-PB | 1..114 | 10..134 | 516 | 74.4 | Plus |
| kni-PA | 429 | CG4717-PA | 1..116 | 10..128 | 503 | 78.2 | Plus |
