Clone Sequence Records
BO01263.3prime Sequence
884 bp (776 high quality bases) assembled on 2005-11-30
> BO01263.3prime
ATGGTCTAGAAAGCTTGCGATTTCCTGTTTCGGCTTGTTTTGCGTCGAGG
CGTTGCGCGAAATCTTCAGGATGTTGGGTGGCTTGGGTTGGTTTTTGTCC
GCCTCGTATTGGGCGCGATGCAATCGCTGGCGATGCTTGTACATGTTGGC
GGAGCAGAAGAATGTCATCGGGCAGTTGGGACAGGTGTAGAGTACTTCAC
CCGTATGAGTGGATGTGTGTTCCTTGAGTTCCTGCGGCCGCTTGAAAGCC
TTTTCGCACATGGTGCACTTAAACTTGCGCTCGCACTCGTGATTGTGGTA
GATGTGACGCCGGAGAGCCCTTGCATTTGGGGACACCTTAGCGCATATAT
GGCAGCGATGCTCGCCGGCACTCTCTACGTGTATGCTCTTCATGTGCTGC
TTCAGGCCGGTCATGCCCTTTAGCCAAGCGCCGCATATCTGGCACTGCTG
TAGCTCCGGTTCCGGACGTGGCTTATCCGAGTGCATCAGCTCCTGGTGCT
TCTTCAGGATGATCTTGGTGCGCATCTGCTTGCCGCACTTGTCGCAGATT
ATGGTACTCTCTGGGTCATGCATAGAGCTCATGTGGTTTTTCAGCTTGCG
CTCGGTGAGAAATTTTTTGTTGCACTCGGAACAGGTGAACTTGAACTCGG
ACTTGGGCACATGCTTGTTAAGCTTGTGGTAGTCTATGGCCGTCTTGCTA
AGGAAGGTCTTCGAGCAGAGGTCGCAGCTAAACGTAAGCTTAACGGCGGG
ATCCATGTGAACCTGCTGGTGCGACTCCCAGTGACGGGAATTTTGGAATG
ACTTCTCACAGACGCTGCACTTAAAGTGATCAGGATTCCAGTGGACGAGT
ACATGCTCGGCCAGCACTTTGCGCTGCGTGAACT
BO01263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-PA | 1959 | CG4282-RA | 1091..1956 | 884..19 | 4280 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-RA | 2393 | CG4282-RA | 1237..2102 | 884..19 | 4300 | 99.8 | Minus |
| CG4707-RA | 2248 | CG4707-RA | 1460..2070 | 667..57 | 480 | 73.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16323854..16324245 | 613..222 | 1960 | 100 | Minus |
| 2R | 25286936 | 2R | 16323521..16323791 | 884..614 | 1325 | 99.3 | Minus |
| 2R | 25286936 | 2R | 16324305..16324510 | 224..19 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 24604773..24604940 | 57..224 | 240 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:39:10 has no hits.
BO01263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:53 Download gff for
BO01263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-PA | 1091..1959 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:53 Download gff for
BO01263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-PA | 1091..1959 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:35 Download gff for
BO01263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 1237..2106 | 13..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:33 Download gff for
BO01263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 1237..2106 | 13..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:33 Download gff for
BO01263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16323521..16323791 | 614..884 | 99 | -> | Minus |
| 2R | 16323854..16324244 | 223..613 | 100 | -> | Minus |
| 2R | 16324307..16324514 | 13..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:35 Download gff for
BO01263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12211026..12211296 | 614..884 | 99 | -> | Minus |
| arm_2R | 12211359..12211749 | 223..613 | 100 | -> | Minus |
| arm_2R | 12211812..12212019 | 13..222 | 98 | | Minus |
BO01263.5prime Sequence
825 bp (824 high quality bases) assembled on 2005-11-30
> BO01263.5prime
GAAGTTATCAGTCGACATGGATTCCTCTCCTAGCTGTTTACTCTGCATGT
GCGAGTATCCGGCCATGATGGGGGACTATATAGATGTACACTCCGCGCGC
GGCGACCAATTGGAGGTGACTACGATCGTCAACCAGCACTTCCCCGTCCA
GATCTCCAAGGAAAGCGACGAAAGGATATGCGGCCGCTGCTGGAAAATCG
TCTCAGACTTCCACACTTTACACGAGTTCGTCAGTGCAGCGCAGAGCTCT
TTACAGGAAACAAAAGTGGCGCTCATGGAGGATGATCCCCTAACACAGGA
AACTACGTCCTTTCCGGAGATTATAAAACTGGCTACTCAGGAGGAGGAAG
GGGTGACGGAACCACAGGAACTTGGCGGTCGGAACTTCTTTTACCCAGAG
ATTAAGATTGAGGAACATGAATTGGATACTCTTCCCCGCATCGAGATCCT
AGAGAGATCGGCCAACACCCAGGAAAACCAGGACCAACTTGAGGGTGCAG
CCAGACGCCTTAGGAAGCGTTTGAAGGCAGAGGATGGATCAAGTGTTGAC
AAGGATAAGGACGAGGATGGAGTAGAAGAGACTGCAGAACCTGCGCCGCC
TAAAAAGCGACGTGGTCGCCCAAGGAAATCAGACGCTGCCGTTGCCCCGC
CCCAAAAACCTAAAGAAGACATTCAACTTGACCTTAAGGCAGAAGAGCTT
GACGAGTTCGTAGATGAGGAGACGGACCCTGACTTCTCATGCCTGGTGCC
TAGCGATAACTCCTCCGAGGACGATGGAGGCAGCGATGGCTTCGACTCAG
ACTCAGACTTTGAACTGGACAATGG
BO01263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-PA | 1959 | CG4282-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-RA | 2393 | CG4282-RA | 147..955 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16322434..16323239 | 20..825 | 4030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:13:09 has no hits.
BO01263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:54 Download gff for
BO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:55 Download gff for
BO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:03 Download gff for
BO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 141..955 | 7..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:46 Download gff for
BO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 141..955 | 7..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:46 Download gff for
BO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16322431..16323239 | 17..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:03 Download gff for
BO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12209936..12210744 | 17..825 | 99 | | Plus |
BO01263.complete Sequence
1990 bp (1990 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629457
> BO01263.complete
GAAGTTATCAGTCGACATGGATTCCTCTCCTAGCTGTTTACTCTGCATGT
GCGAGTATCCGGCCATGATGGGGGACTATATAGATGTACACTCCGCGCGC
GGCGACCAATTGGAGGTGACTACGATCGTCAACCAGCACTTCCCCGTCCA
GATCTCCAAGGAAAGCGACGAAAGGATATGCGGCCGCTGCTGGAAAATCG
TCTCAGACTTCCACACTTTACACGAGTTCGTCAGTGCAGCGCAGAGCTCT
TTACAGGAAACAAAAGTGGCGCTCATGGAGGATGATCCCCTAACACAGGA
AACTACGTCCTTTCCGGAGATTATAAAACTGGCTACTCAGGAGGAGGAAG
GGGTGACGGAACCACAGGAACTTGGCGGTCGGAACTTCTTTTACCCAGAG
ATTAAGATTGAGGAACATGAATTGGATACTCTTCCCCGCATCGAGATCCT
AGAGAGATCGGCCAACACCCAGGAAAACCAGGACCAACTTGAGGGTGCAG
CCAGACGCCTTAGGAAGCGTTTGAAGGCAGAGGATGGATCAAGTGTTGAC
AAGGATAAGGACGAGGATGGAGTAGAAGAGACTGCAGAACCTGCGCCGCC
TAAAAAGCGACGTGGTCGCCCAAGGAAATCAGACGCTGCCGTTGCCCCGC
CCCAAAAACCTAAAGAAGACATTCAACTTGACCTTAAGGCAGAAGAGCTT
GACGAGTTCGTAGATGAGGAGACGGACCCTGACTTCTCATGCCTGGTGCC
TAGCGATAACTCCTCCGAGGACGATGGAGGCAGCGATGGCTTCGACTCAG
ACTCAGACTTTGAACTGGACAATGGAAAGCAAGAGTTTGCCGTGCTGCCA
AAAAGAACAGTAGTACGCCCCAAGAAATACAAGAAGCGGACGAAACCGGC
GGAGCCGAAAGTCCGCATGTCCCGCGAACTGCTGGAGCAGCGCAAAAAGC
AGCAGGAAGAATACGACGTCATCATCGCCAAGTTCTTTACCAGCGTGCTG
CCGTGTGCCATCTGCAATCTGCTGGTGCACAACTTCACCGAGATGCAGCG
TCATCACCGACTGACCCATCAAGTGGATCCCGGCTACATGATGTGCTGCG
GCCGCAAGTTCACGCAGCGCAAAGTGCTGGCCGAGCATGTACTCGTCCAC
TGGAATCCTGATCACTTTAAGTGCAGCGTCTGTGAGAAGTCATTCCAAAA
TTCCCGTCACCTGGAGTCGCACCAGCAGGTTCACATGGATCCCGCCGTTA
AGCTTACGTTTAGCTGCGACCTCTGCTCGAAGACCTTCCTTAGCAAGACG
GCCATAGACTACCACAAGCTTAACAAGCATGTGCCCAAGTCCGAGTTCAA
GTTCACCTGTTCCGAGTGCAACAAAAAATTTCTCACCGAGCGCAAGCTGA
AAAACCACATGAGCTCTATGCATGACCCAGAGAGTACCATAATCTGCGAC
AAGTGCGGCAAGCAGATGCGCACCAAGATCATCCTGAAGAAGCACCAGGA
GCTGATGCACTCGGATAAGCCACGTCCGGAACCGGAGCTACAGCAGTGCC
AGATATGCGGCGCTTGGCTAAAGGGCATGACCGGCCTGAAGCAGCACATG
AAGAGCATACACGTAGAGAGTGCCGGCGAGCATCGCTGCCATATATGCGC
TAAGGTGTCCCCAAATGCAAGGGCTCTCCGGCGTCACATCTACCACAATC
ACGAGTGCGAGCGCAAGTTTAAGTGCACCATGTGCGAAAAGGCTTTCAAG
CGGCCGCAGGAACTCAAGGAACACACATCCACTCATACGGGTGAAGTACT
CTACACCTGTCCCAACTGCCCGATGACATTCTTCTGCTCCGCCAACATGT
ACAAGCATCGCCAGCGATTGCATCGCGCCCAATACGAGGCGGACAAAAAC
CAACCCAAGCCACCCAACATCCTGAAGATTTCGCGCAACGCCTCGACGCA
AAACAAGCCGAAACAGGAAATCGCAAGCTTTCTAGACCAT
BO01263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-RA | 1959 | CG4282-PA | 1..1956 | 17..1972 | 9780 | 100 | Plus |
| CG4707-RA | 2022 | CG4707-PA | 1338..1948 | 1324..1934 | 475 | 71.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-RA | 2393 | CG4282-RA | 147..2102 | 17..1972 | 9780 | 100 | Plus |
| CG4707-RA | 2248 | CG4707-RA | 1460..2070 | 1324..1934 | 475 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16322434..16323791 | 20..1377 | 6790 | 100 | Plus |
| 2R | 25286936 | 2R | 16323854..16324245 | 1378..1769 | 1960 | 100 | Plus |
| 2R | 25286936 | 2R | 16324305..16324510 | 1767..1972 | 1030 | 100 | Plus |
| 2R | 25286936 | 2R | 24604773..24604940 | 1934..1767 | 240 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:30:00 has no hits.
BO01263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:18 Download gff for
BO01263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 1..1959 | 17..1973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:37 Download gff for
BO01263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 139..2104 | 7..1978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:21 Download gff for
BO01263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 147..2102 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:18 Download gff for
BO01263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 139..2104 | 7..1978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:50 Download gff for
BO01263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4282-RA | 147..2102 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:50 Download gff for
BO01263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16324307..16324510 | 1769..1974 | 99 | | Plus |
| 2R | 16322431..16323791 | 17..1377 | 99 | -> | Plus |
| 2R | 16323854..16324244 | 1378..1768 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:21 Download gff for
BO01263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12211812..12212015 | 1769..1974 | 99 | | Plus |
| arm_2R | 12211359..12211749 | 1378..1768 | 100 | -> | Plus |
| arm_2R | 12209936..12211296 | 17..1377 | 99 | -> | Plus |
BO01263.pep Sequence
Translation from 16 to 1990
> BO01263.pep
MDSSPSCLLCMCEYPAMMGDYIDVHSARGDQLEVTTIVNQHFPVQISKES
DERICGRCWKIVSDFHTLHEFVSAAQSSLQETKVALMEDDPLTQETTSFP
EIIKLATQEEEGVTEPQELGGRNFFYPEIKIEEHELDTLPRIEILERSAN
TQENQDQLEGAARRLRKRLKAEDGSSVDKDKDEDGVEETAEPAPPKKRRG
RPRKSDAAVAPPQKPKEDIQLDLKAEELDEFVDEETDPDFSCLVPSDNSS
EDDGGSDGFDSDSDFELDNGKQEFAVLPKRTVVRPKKYKKRTKPAEPKVR
MSRELLEQRKKQQEEYDVIIAKFFTSVLPCAICNLLVHNFTEMQRHHRLT
HQVDPGYMMCCGRKFTQRKVLAEHVLVHWNPDHFKCSVCEKSFQNSRHLE
SHQQVHMDPAVKLTFSCDLCSKTFLSKTAIDYHKLNKHVPKSEFKFTCSE
CNKKFLTERKLKNHMSSMHDPESTIICDKCGKQMRTKIILKKHQELMHSD
KPRPEPELQQCQICGAWLKGMTGLKQHMKSIHVESAGEHRCHICAKVSPN
ARALRRHIYHNHECERKFKCTMCEKAFKRPQELKEHTSTHTGEVLYTCPN
CPMTFFCSANMYKHRQRLHRAQYEADKNQPKPPNILKISRNASTQNKPKQ
EIASFLDH
BO01263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4282-PA | 652 | CG4282-PA | 1..652 | 1..652 | 3512 | 100 | Plus |
| CG4707-PA | 673 | CG4707-PA | 4..660 | 7..650 | 1569 | 46.4 | Plus |
| CG8388-PA | 572 | CG8388-PA | 108..551 | 193..647 | 692 | 34.3 | Plus |
| grau-PA | 570 | CG33133-PA | 125..532 | 209..624 | 559 | 32.1 | Plus |
| CG11696-PA | 664 | CG11696-PA | 53..616 | 54..650 | 547 | 29.3 | Plus |
