Clone Sequence Records
BO01265.3prime Sequence
936 bp (791 high quality bases) assembled on 2005-11-30
> BO01265.3prime
ATGGTCTAGAAAGCTTGCCTTTTCGTATGTGTCTTGCTGCTTCTCCAGTG
CCAGTTGGTTCTTCAAATCCTTGAGCTCCTTCTTGGCGACCTTCGCAATT
TCCTGCCGTAGTGCCTCAACCTTTTGTTTACGGTCATTTCTCTCCCCCAG
AGGCTTCGCCGGCTTTTCGTCATGGACTTTTTGGTGTCGGATGAGCGCCG
CTACCTGGCGAAAGCGATTGCCACACGTCTTACACTCGAAGGGCTTTTCG
CCAGTGTGTATCCACTCGTGTTGCTTCACGGATTGCGAGTTGGCAAAGCG
ACGGGAGCAGAAACGGCACTCAAAGTCCTTGACTTTTTCGTGGACGCTCT
TGTAGTGGCGCTTCATGTTGCCTATGCTCTTGAATCCCTGACTGCAGCTG
GGACACAAGTACATACCCTCCTTTTGCACAAACTGAATCTCGTCTGTGGG
ATTCACTGCGGTCCCTGCCAATAGGGCCACATCAACTTGCTCTACGCGGC
GGGGATTCTTAGGAATGCTGGCTACGGATTCGGCGTAAACCTTCAGCAGC
TGATGTGAGTCCACTTGAGTGTCACTGGCATCGCCATTTACTTGCACCTG
TTTATAAGTTTCCAGAGCCCTTTCCACGCTCTTCTCATGAATCTTCAGAT
GATTGTTGAGACTCTCCGAATGCAGGAACTTTTTGTCACAAACCTTGCAT
TCGCAGCGCTTCTCACCAGTGTGCGCCATCTCGTGTATTTTGCAGGCGTA
TGCTTTCCCGAACGTCTTTCCACAGTACTGGCAAGCAAAATTCCGGATTT
TCTCATGTACGATCTTAACATGGCTCTCTAGCACCCGCTTCGTGTGGGTG
GCATAGTCGCAGATGCGGCACTTAAACTGGGTCCGNTGGGGTGTGGATCA
GAATGTGCTTACTCCATTCCTGGCGGGGTGGTCTTT
BO01265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-PA | 1989 | CG7386-RA | 1115..1986 | 890..19 | 4316 | 99.7 | Minus |
| CG7386-PA | 1989 | CG7386-RA | 1079..1117 | 927..889 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-RA | 2247 | CG7386-RA | 1140..2055 | 936..19 | 4514 | 99.6 | Minus |
| CG10274-RB | 3034 | CG10274-RB | 1471..1658 | 818..631 | 340 | 78.7 | Minus |
| CG10274-RB | 3034 | CG10274-RB | 1987..2185 | 392..194 | 260 | 76 | Minus |
| D19A-RA | 3233 | CG10269-RA | 2134..2299 | 369..204 | 215 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6191181..6191857 | 695..19 | 3385 | 100 | Minus |
| 3L | 28110227 | 3L | 6190892..6191126 | 927..692 | 1104 | 98.7 | Minus |
| 3L | 28110227 | 3L | 6179526..6179724 | 194..392 | 260 | 75.4 | Plus |
| 3L | 28110227 | 3L | 6180179..6180305 | 692..818 | 260 | 80.3 | Plus |
| 3L | 28110227 | 3L | 6186764..6186929 | 204..369 | 200 | 74.7 | Plus |
| 3L | 28110227 | 3L | 6187359..6187454 | 694..789 | 195 | 80.2 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:15:20 has no hits.
BO01265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:57 Download gff for
BO01265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-PA | 1071..1989 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:22:59 Download gff for
BO01265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-PA | 1071..1989 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:02 Download gff for
BO01265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 1140..2058 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:18 Download gff for
BO01265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 1140..2058 | 15..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:18 Download gff for
BO01265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6190884..6191124 | 694..936 | 98 | -> | Minus |
| 3L | 6191183..6191860 | 15..693 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:02 Download gff for
BO01265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6183984..6184224 | 694..936 | 98 | -> | Minus |
| arm_3L | 6184283..6184960 | 15..693 | 99 | | Minus |
BO01265.5prime Sequence
792 bp (770 high quality bases) assembled on 2005-11-30
> BO01265.5prime
GAAGTTATCAGTCGACATGGAGCTCAAGTACTCCGTCCAATCGCTTTGTC
TCACCTGCCTTGTCCACCTGGAGCATGGTGCTGGACACGATCTCTTCGTG
GTTCCAGATCTGTTCCAGAAGCTCAGGGCATGCACTTCGTTTGATGCGGA
TCAAAACGACGGTTTCCCGAGAAACCTGTGCACCCAATGTTTCACCAAGC
TGAACGACCTGCATGACTTCCGCGAACTGTGCGCAGAATCCATTAAACGT
CTAAAGGAAATGGTGACCAGCCAGAGGAATATGCCCATGGGTGTATTCGA
ATCTATAGCTGATGATTCTGAGGCACCTGAAAGGCCAGAGGAGCCGGCCA
GTTTCGATCCGCTGCTGAATAACAAACTAGAGATGATTGACAACGAGGAG
GATGTGTTCAAGTTGCTGGAAAAAGTTGACAAGGAACTAGAGGAGCATTC
AAGGGACCAAAGCGAGGAGCACTTCTCCAGTGCAGAGCACAACGGACTGG
AGGAGGAGAAAAAGGAGTCGGAAGGGTTCAACAGCGACGATGAGCAGGCC
ATGGGGCAGCGACGGATTGCGAACGACAAGCGTAAACTGTTTCGCCTTAT
GAGCTGTTCCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGG
AGCACATGAAGCACCACAATGACCTGTTGCCGTTTCAGTGTCAGGAGGAA
AGCTGCCGAAAGGGCTTCACCACAGCCGGTGCACTGCGTTTGCACGTGGA
CTATGCGCACTCCAAGAAGGAGGATACGGTTCCCTGCACCGT
BO01265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-PA | 1989 | CG7386-RA | 1..776 | 17..792 | 3780 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-RA | 2247 | CG7386-RA | 70..845 | 17..792 | 3820 | 99.5 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 453..535 | 353..435 | 220 | 84.3 | Plus |
| D19A-RA | 3233 | CG10269-RA | 282..353 | 148..219 | 210 | 86.1 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 914..991 | 646..723 | 180 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6189814..6190589 | 17..792 | 3820 | 99.5 | Plus |
| 3L | 28110227 | 3L | 6181295..6181377 | 435..353 | 220 | 84.3 | Minus |
| 3L | 28110227 | 3L | 6188771..6188842 | 219..148 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:15 has no hits.
BO01265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:58 Download gff for
BO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-PA | 1..776 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:00 Download gff for
BO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-PA | 1..776 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:05 Download gff for
BO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 70..845 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:02 Download gff for
BO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 70..845 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:02 Download gff for
BO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6189814..6190589 | 17..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:05 Download gff for
BO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6182914..6183689 | 17..792 | 99 | | Plus |
BO01265.complete Sequence
2020 bp (2020 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629458
> BO01265.complete
GAAGTTATCAGTCGACATGGAGCTCAAGTACTCCGTCCAATCGCTTTGTC
TCACCTGCCTTGTCCACCTGGAGCATGGTGCTGGACACGATCTCTTCGTG
GTTCCAGATCTGTTCCAGAAGCTCAGGGCATGCACTTCGTTTGATGCGGA
TCAAAACGACGGTTTCCCGAGAAACCTGTGCACCCAATGTTTCACCAAGC
TGAACGACCTGCATGACTTCCGCGAACTGTGCGCAGAATCCATTAAACGT
CTAAAGGAAATGGTGACCAGCCAGAGGAATATGCCCATGGGTGTATTCGA
ATCTATAGCTGATGATTCTGAGGCACCTGAAAGGCCAGAGGAGCCGGCCA
GTTTCGATCCGCTGCTGAATAACAAACTAGAGATGATTGACAACGAGGAG
GATGTGTTCAAGTTGCTGGAAAAAGTTGACAAGGAACTAGAGGAGCATTC
AAGGGACCAAAGCGAGGAGCACTTCTCCAGTGCAGAGCACAACGGACTGG
AGGAGGAGAAAAAGGAGTCGGAAGGGTTCAACAGCGACGATGAGCAGGCC
ATGGGGCAGCGACGGATTGCGAACGACAAGCGTAAACTGTTTCGCCTTAT
GAGCTGTTCCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGG
AGCACATGAAGCACCACAATGACCTGTTGCCGTTTCAGTGTCAGGAGGAA
AGCTGCCGAAAGGGCTTCACCACAGCCGGTGCACTGCGTTTGCACGTGGA
CTATGCGCACTCCAAGAAGGAGGATACGGTTCCCTGCACCGTGGAGGGCT
GTCAATTGGTTTTTTCCCGTCTCCGGCTGCTGACCATTCACTTGAAAAAG
GTTCACAACCAGGCGAGGGTTATTGCTCCGCGGGGTGAACAGTCTTGCAA
GGAATGCGGCGTGGTGTTTCGTTGCCCGGTGGCTATGAAGAAGCACATGT
ACACGCACACGGGCGAAGAGCTTCCCTATCCGTGTACCATTTGCGGCAAG
GGCTTTTACATCAATAGTGCCCTAAAGAATCATCTTCTCCGGCATGCTGG
CATCAAGAACTACGTGTGTCAGTACTGCGGAGTGCGAAAGACCACCCGCC
AGGAATGGAGTAAGCACATTCTGATCCACACCCAACGGAACCAGTTTAAG
TGCCGCATCTGCGACTATGCCACCCACACGAAGCGGGTGCTAGAGAGCCA
TGTTAAGATCGTACATGAGAAAATCCGGAATTTTGCTTGCCAGTACTGTG
GAAAGACGTTCGGGAAAGCATACGCCTGCAAAATACACGAGATGGCGCAC
ACTGGTGAGAAGCGCTGCGAATGCAAGGTTTGTGACAAAAAGTTCCTGCA
TTCGGAGAGTCTCAACAATCATCTGAAGATTCATGAGAAGAGCGTGGAAA
GGGCTCTGGAAACTTATAAACAGGTGCAAGTAAATGGCGATGCCAGTGAC
ACTCAAGTGGACTCACATCAGCTGCTGAAGGTTTACGCCGAATCCGTAGC
CAGCATTCCTAAGAATCCCCGCCGCGTAGAGCAAGTTGATGTGGCCCTAT
TGGCAGGGACCGCAGTGAATCCCACAGACGAGATTCAGTTTGTGCAAAAG
GAGGGTATGTACTTGTGTCCCAGCTGCAGTCAGGGATTCAAGAGCATAGG
CAACATGAAGCGCCACTACAAGAGCGTCCACGAAAAAGTCAAGGACTTTG
AGTGCCGTTTCTGCTCCCGTCGCTTTGCCAACTCGCAATCCGTGAAGCAA
CACGAGTGGATACACACTGGCGAAAAGCCCTTCGAGTGTAAGACGTGTGG
CAATCGCTTTCGCCAGGTAGCGGCGCTCATCCGACACCAAAAAGTCCATG
ACGAAAAGCCGGCGAAGCCTCTGGGGGAGAGAAATGACCGTAAACAAAAG
GTTGAGGCACTACGGCAGGAAATTGCGAAGGTCGCCAAGAAGGAGCTCAA
GGATTTGAAGAACCAACTGGCACTGGAGAAGCAGCAAGACACATACGAAA
AGGCAAGCTTTCTAGACCAT
BO01265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-RA | 1989 | CG7386-PA | 1..1986 | 17..2002 | 9870 | 99.8 | Plus |
| CG10274-RB | 2592 | CG10274-PB | 1144..1596 | 938..1390 | 615 | 75.7 | Plus |
| D19A-RA | 2538 | CG10269-PA | 1171..1560 | 938..1327 | 465 | 74.6 | Plus |
| CG10274-RB | 2592 | CG10274-PB | 1925..2123 | 1629..1827 | 260 | 75.4 | Plus |
| CG10274-RB | 2592 | CG10274-PB | 391..473 | 353..435 | 220 | 84.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-RA | 2247 | CG7386-RA | 70..2055 | 17..2002 | 9870 | 99.8 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 1206..1658 | 938..1390 | 615 | 75.7 | Plus |
| D19A-RA | 3233 | CG10269-RA | 1315..1704 | 938..1327 | 465 | 74.6 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 1987..2185 | 1629..1827 | 260 | 75.4 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 453..535 | 353..435 | 220 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6189814..6191126 | 17..1329 | 6505 | 99.7 | Plus |
| 3L | 28110227 | 3L | 6191181..6191857 | 1326..2002 | 3385 | 100 | Plus |
| 3L | 28110227 | 3L | 6180179..6180570 | 1329..938 | 535 | 75.8 | Minus |
| 3L | 28110227 | 3L | 6187359..6187748 | 1327..938 | 465 | 74.6 | Minus |
| 3L | 28110227 | 3L | 6183266..6183655 | 1327..938 | 435 | 74.1 | Minus |
| 3L | 28110227 | 3L | 6179526..6179724 | 1827..1629 | 260 | 75.4 | Minus |
| 3L | 28110227 | 3L | 6181295..6181377 | 435..353 | 220 | 84.3 | Minus |
| 3L | 28110227 | 3L | 6188771..6188842 | 219..148 | 210 | 86.1 | Minus |
| 3L | 28110227 | 3L | 6186764..6186929 | 1817..1652 | 200 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:02:21 has no hits.
BO01265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:19 Download gff for
BO01265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 1..1989 | 17..2006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:39 Download gff for
BO01265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 58..2046 | 17..2006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:59 Download gff for
BO01265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 70..2055 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:19 Download gff for
BO01265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 58..2046 | 17..2006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:18 Download gff for
BO01265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 70..2055 | 17..2004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:18 Download gff for
BO01265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6189814..6191124 | 17..1327 | 99 | -> | Plus |
| 3L | 6191183..6191857 | 1328..2004 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:59 Download gff for
BO01265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6182914..6184224 | 17..1327 | 99 | -> | Plus |
| arm_3L | 6184283..6184957 | 1328..2004 | 99 | | Plus |
BO01265.pep Sequence
Translation from 16 to 2020
> BO01265.pep
MELKYSVQSLCLTCLVHLEHGAGHDLFVVPDLFQKLRACTSFDADQNDGF
PRNLCTQCFTKLNDLHDFRELCAESIKRLKEMVTSQRNMPMGVFESIADD
SEAPERPEEPASFDPLLNNKLEMIDNEEDVFKLLEKVDKELEEHSRDQSE
EHFSSAEHNGLEEEKKESEGFNSDDEQAMGQRRIANDKRKLFRLMSCSIC
QQKFKKQSKFEEHMKHHNDLLPFQCQEESCRKGFTTAGALRLHVDYAHSK
KEDTVPCTVEGCQLVFSRLRLLTIHLKKVHNQARVIAPRGEQSCKECGVV
FRCPVAMKKHMYTHTGEELPYPCTICGKGFYINSALKNHLLRHAGIKNYV
CQYCGVRKTTRQEWSKHILIHTQRNQFKCRICDYATHTKRVLESHVKIVH
EKIRNFACQYCGKTFGKAYACKIHEMAHTGEKRCECKVCDKKFLHSESLN
NHLKIHEKSVERALETYKQVQVNGDASDTQVDSHQLLKVYAESVASIPKN
PRRVEQVDVALLAGTAVNPTDEIQFVQKEGMYLCPSCSQGFKSIGNMKRH
YKSVHEKVKDFECRFCSRRFANSQSVKQHEWIHTGEKPFECKTCGNRFRQ
VAALIRHQKVHDEKPAKPLGERNDRKQKVEALRQEIAKVAKKELKDLKNQ
LALEKQQDTYEKASFLDH
BO01265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-PA | 662 | CG7386-PA | 1..662 | 1..662 | 3546 | 99.7 | Plus |
| CG10274-PB | 863 | CG10274-PB | 9..780 | 4..662 | 1894 | 48.8 | Plus |
| D19B-PA | 774 | CG10270-PA | 4..683 | 2..631 | 1676 | 47.3 | Plus |
| D19A-PA | 845 | CG10269-PA | 6..823 | 4..661 | 1653 | 41.8 | Plus |
| CG10147-PB | 448 | CG10147-PB | 21..430 | 24..457 | 560 | 30.3 | Plus |
