Clone Sequence Records
BO01267.3prime Sequence
859 bp (709 high quality bases) assembled on 2005-11-30
> BO01267.3prime
ATGGTCTAGAAAGCTTGCCAACTCGTGACGTGGCGTATTTAAAACCGAAC
TTTGCGTCTGCATCTGGCGCCTGCTGGCCTCCTGGTCATTGTTGCCATCG
TCCGTGTCCAAAATGTCGGACAGATCATACATGGGCTGATAGGAAATCAG
TTCAGAGCCACTGGGTGCTTTCTTTTCACTGCTTATGCTGTCATTGGGAA
ACGATAGGCCATAGTTGTCCATTAGATCAGAGTCGTTAAACAGACCCATG
AGCATGTTCTGATCAATGGCCACCCCATCGCCACGCAGCAGATCCTTCAG
TGTTTCCAACTCATCTTGCATGCTTTCCAAGTGCCCGTGGAGTTCGTCAA
CTGAGGCCATCCTGAGGAGTTGACTGTTGTTGGTATCGCGGTTGTTTCCG
TTCTCAGCGCCACTGTATTTGGCCACAGCCATGCCCTCCTCCTCAGATGC
TTGCGCCTTGGCCGCTGCCTTCGATGTCGAGGCCTGATTGGCATCCAGTT
TGGCTGCCTCTTCCACGCCGTCGGGAAGCAGAGCGTCTTCAAAAATATCC
GTTGGCATATCCTCACTGATGAAGTTAACACTGTACAGATCGTTCGCGGG
AGTCATTAGATCCATCAGTCCGGAACTGTTCTCCGGCTCAGACTTTATAA
TCATTGGCTGGACCATCACATCAGGTTGCGTACTATGCTGGATGCTTGTC
CGTTGCGCCTTGGGCGACGAACTATCTACGAGAATATCTCCAGCATCAAG
TATAACATCTCCTGCCTGTCGTCGTAGCTTGTTGTTCTCCTTAAGCTGCT
GACGCTTCTGCTGCTCCTGCTCCCGCACCATGGGGCGTGGTAAGCACATT
CTGCTCCTC
BO01267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5748-PA | 2076 | Hsf-RA | 1594..2073 | 498..19 | 2375 | 99.7 | Minus |
| CG5748-PA | 2076 | Hsf-RA | 1171..1511 | 834..494 | 1680 | 99.7 | Minus |
| CG5748-PB | 2148 | Hsf-RB | 1171..1511 | 834..494 | 1680 | 99.7 | Minus |
| CG5748-PC | 2130 | Hsf-RC | 1171..1511 | 834..494 | 1680 | 99.7 | Minus |
| CG5748-PD | 2202 | Hsf-RD | 1171..1511 | 834..494 | 1680 | 99.7 | Minus |
| CG5748-PB | 2148 | Hsf-RB | 1815..2145 | 349..19 | 1655 | 100 | Minus |
| CG5748-PC | 2130 | Hsf-RC | 1594..1848 | 498..244 | 1250 | 99.6 | Minus |
| CG5748-PC | 2130 | Hsf-RC | 1903..2127 | 243..19 | 1125 | 100 | Minus |
| CG5748-PD | 2202 | Hsf-RD | 1975..2199 | 243..19 | 1125 | 100 | Minus |
| CG5748-PB | 2148 | Hsf-RB | 1594..1742 | 498..350 | 720 | 99.3 | Minus |
| CG5748-PD | 2202 | Hsf-RD | 1594..1742 | 498..350 | 720 | 99.3 | Minus |
| CG5748-PD | 2202 | Hsf-RD | 1815..1920 | 349..244 | 530 | 100 | Minus |
| CG5748-PA | 2076 | Hsf-RA | 1147..1173 | 859..833 | 135 | 100 | Minus |
| CG5748-PB | 2148 | Hsf-RB | 1147..1173 | 859..833 | 135 | 100 | Minus |
| CG5748-PC | 2130 | Hsf-RC | 1147..1173 | 859..833 | 135 | 100 | Minus |
| CG5748-PD | 2202 | Hsf-RD | 1147..1173 | 859..833 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2771 | CG5748-RA | 1837..2316 | 498..19 | 2385 | 99.8 | Minus |
| Hsf-RA | 2771 | CG5748-RA | 1390..1754 | 859..494 | 1790 | 99.5 | Minus |
| Hsf-RD | 2897 | CG5748-RD | 1390..1754 | 859..494 | 1790 | 99.5 | Minus |
| Hsf-RC | 2838 | CG5748-RC | 1403..1767 | 859..494 | 1790 | 99.5 | Minus |
| Hsf-RD | 2897 | CG5748-RD | 2218..2442 | 243..19 | 1125 | 100 | Minus |
| Hsf-RD | 2897 | CG5748-RD | 1837..1985 | 498..350 | 730 | 99.3 | Minus |
| Hsf-RD | 2897 | CG5748-RD | 2058..2163 | 349..244 | 530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18131793..18132114 | 537..859 | 1550 | 99.4 | Plus |
| 2R | 25286936 | 2R | 18130758..18130908 | 19..169 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 18131460..18131608 | 350..498 | 730 | 99.3 | Plus |
| 2R | 25286936 | 2R | 18131282..18131387 | 244..349 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 18130970..18131045 | 168..243 | 380 | 100 | Plus |
| 2R | 25286936 | 2R | 18131691..18131734 | 494..537 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:47:57 has no hits.
BO01267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:00 Download gff for
BO01267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-PA | 1147..1506 | 499..859 | 99 | | Minus |
| Hsf-PA | 1590..2076 | 15..498 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:05 Download gff for
BO01267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5748-PA | 1147..1506 | 499..859 | 99 | <- | Minus |
| CG5748-PA | 1590..2076 | 15..498 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:53 Download gff for
BO01267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RA | 1390..1749 | 499..859 | 99 | <- | Minus |
| Hsf-RA | 1833..2325 | 7..498 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:31 Download gff for
BO01267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RA | 1390..1749 | 499..859 | 99 | <- | Minus |
| Hsf-RA | 1833..2325 | 7..498 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:31 Download gff for
BO01267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18130749..18130906 | 7..167 | 96 | <- | Plus |
| 2R | 18130970..18131045 | 168..243 | 100 | <- | Plus |
| 2R | 18131282..18131387 | 244..349 | 100 | <- | Plus |
| 2R | 18131460..18131608 | 350..498 | 99 | <- | Plus |
| 2R | 18131696..18131734 | 499..537 | 100 | <- | Plus |
| 2R | 18131794..18132114 | 538..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:53 Download gff for
BO01267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14019299..14019619 | 538..859 | 99 | | Plus |
| arm_2R | 14018254..14018411 | 7..167 | 96 | <- | Plus |
| arm_2R | 14018475..14018550 | 168..243 | 100 | <- | Plus |
| arm_2R | 14018787..14018892 | 244..349 | 100 | <- | Plus |
| arm_2R | 14018965..14019113 | 350..498 | 99 | <- | Plus |
| arm_2R | 14019201..14019239 | 499..537 | 100 | <- | Plus |
BO01267.5prime Sequence
910 bp (740 high quality bases) assembled on 2005-11-30
> BO01267.5prime
GAAGTTATCAGTCGACATGTCCAGGTCGCGTTCATCCGCTAAAGCCGTGC
AGTTCAAGCACGAATCGGAGGAAGAGGAAGAAGACGAGGAGGAGCAGCTG
CCTTCCAGGAGAATGCACTCTTACGGAGACGCCGCGGCCATCGGAAGCGG
GGTGCCGGCCTTTTTGGCCAAATTGTGGCGCCTGGTGGACGATGCCGATA
CCAATCGCTTGATTTGCTGGACCAAGGATGGCCAAAGTTTCGTTATTCAA
AATCAAGCGCAATTTGCCAAGGAACTATTGCCACTAAACTACAAGCACAA
CAACATGGCCAGTTTCATAAGGCAATTGAATATGTATGGATTCCACAAGA
TCACCTCTATTGACAATGGCGGACTACGTTTTGATCGCGACGAGATTGAA
TTTTCGCACCCATTTTTTAAGCGCAACTCGCCTTTTCTACTTGACCAAAT
CAAAAGGAAAATATCGAACAACAAAAATGGTGACGACAAAGGTGTCCTGA
AGCCGGAGGCCATGTCGAAGATTCTCACCGATGTGAAAGTCATGCGGGGT
CGTCAGGACAATCTGGATTCGCGCTTCTCCGCCATGAAACAGGAGAACGA
AGTGCTGTGGCGCGAGATAGCCAGCCTGCGCCAAAAGCACGCTAAGCAGC
AACAAATAGTCAACAAACTGATCCAGTTCCTCATTACCATTGTGCAACCG
TCGCGCAACATGTCTGGCGTGAAACGCCACGTGCAGCTGATGATANCACA
TACGCCGGAAATTGATCGTGCACGGACCACCAGTGAGACCGAGAGCGAGA
GTGGCGGCGGACCGGTTATCCACGAGCTTAGGGAGGAGCTTCTTGATGAG
GTGATGAATCCCATCACGGCTGGCTACACCGCAGCCTCACATAATGAACA
AGAGAGCGTC
BO01267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5748-PB | 2148 | Hsf-RB | 1..728 | 17..744 | 3565 | 99.5 | Plus |
| CG5748-PC | 2130 | Hsf-RC | 1..728 | 17..744 | 3565 | 99.5 | Plus |
| CG5748-PD | 2202 | Hsf-RD | 1..728 | 17..744 | 3565 | 99.5 | Plus |
| CG5748-PA | 2076 | Hsf-RA | 1..728 | 17..744 | 3565 | 99.5 | Plus |
| CG5748-PB | 2148 | Hsf-RB | 734..845 | 750..861 | 560 | 100 | Plus |
| CG5748-PC | 2130 | Hsf-RC | 734..845 | 750..861 | 560 | 100 | Plus |
| CG5748-PD | 2202 | Hsf-RD | 734..845 | 750..861 | 560 | 100 | Plus |
| CG5748-PA | 2076 | Hsf-RA | 734..845 | 750..861 | 560 | 100 | Plus |
| CG5748-PB | 2148 | Hsf-RB | 851..894 | 867..910 | 170 | 95.4 | Plus |
| CG5748-PC | 2130 | Hsf-RC | 851..894 | 867..910 | 170 | 95.4 | Plus |
| CG5748-PD | 2202 | Hsf-RD | 851..894 | 867..910 | 170 | 95.4 | Plus |
| CG5748-PA | 2076 | Hsf-RA | 851..894 | 867..910 | 170 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2771 | CG5748-RA | 244..1137 | 17..910 | 4294 | 98.9 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 244..1137 | 17..910 | 4294 | 98.9 | Plus |
| Hsf-RC | 2838 | CG5748-RC | 257..1150 | 17..910 | 4294 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18132367..18132941 | 910..336 | 2699 | 97.9 | Minus |
| 2R | 25286936 | 2R | 18133870..18134080 | 227..17 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18133004..18133114 | 335..225 | 510 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:39:20 has no hits.
BO01267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:01 Download gff for
BO01267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-PA | 1..894 | 17..910 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:06 Download gff for
BO01267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5748-PB | 1..894 | 17..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:38 Download gff for
BO01267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1150 | 17..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:57 Download gff for
BO01267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1150 | 17..910 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:57 Download gff for
BO01267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18132367..18132941 | 336..910 | 98 | <- | Minus |
| 2R | 18133004..18133112 | 227..335 | 97 | <- | Minus |
| 2R | 18133871..18134080 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:38 Download gff for
BO01267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14019872..14020446 | 336..910 | 98 | <- | Minus |
| arm_2R | 14020509..14020617 | 227..335 | 97 | <- | Minus |
| arm_2R | 14021376..14021585 | 17..226 | 100 | | Minus |
BO01267.complete Sequence
2020 bp (2020 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629459
> BO01267.complete
GAAGTTATCAGTCGACATGTCCAGGTCGCGTTCATCCGCTAAAGCCGTGC
AGTTCAAGCACGAATCGGAGGAAGAGGAAGAAGACGAGGAGGAGCAGCTG
CCTTCCAGGAGAATGCACTCTTACGGAGACGCCGCGGCCATCGGAAGCGG
GGTGCCGGCCTTTTTGGCCAAATTGTGGCGCCTGGTGGACGATGCCGATA
CCAATCGCTTGATTTGCTGGACCAAGGATGGCCAAAGTTTCGTTATTCAA
AATCAAGCGCAATTTGCCAAGGAACTATTGCCACTAAACTACAAGCACAA
CAACATGGCCAGTTTCATAAGGCAATTGAATATGTATGGATTCCACAAGA
TCACCTCTATTGACAATGGCGGACTACGTTTTGATCGCGACGAGATTGAA
TTTTCGCACCCATTTTTTAAGCGCAACTCGCCTTTTCTACTTGACCAAAT
CAAAAGGAAAATATCGAACAACAAAAATGGTGACGACAAAGGTGTCCTGA
AGCCGGAGGCCATGTCGAAGATTCTCACCGATGTGAAAGTCATGCGGGGT
CGTCAGGACAATCTGGATTCGCGCTTCTCCGCCATGAAACAGGAGAACGA
AGTGCTGTGGCGCGAGATAGCCAGCCTGCGCCAAAAGCACGCTAAGCAGC
AACAAATAGTCAACAAACTGATCCAGTTCCTCATTACCATTGTGCAACCG
TCGCGCAACATGTCTGGCGTGAAACGCCACGTGCAGCTGATGATCAACAA
TACGCCGGAAATTGATCGTGCACGGACCACCAGTGAGACCGAGAGCGAGA
GTGGCGGCGGACCGGTTATCCACGAGCTTAGGGAGGAGCTTCTTGATGAG
GTGATGAATCCATCACCGGCTGGCTACACCGCAGCCTCACATTATGACCA
AGAGAGCGTCTCTCCGCCTGCCGTTGAGCGTCCGCGATCTAACATGAGCA
TTAGCTCGCACAACGTCGATTATTCGAATCAGAGTGTGGAGGACTTGCTG
CTCCAGGGAAATGGAACCGCTGGCGGTAATATTCTAGTAGGCGGAGCCGC
TTCTCCCATGGCCCAAAGTGTGAGTCAATCGCCGGCCCAACATGATGTCT
ACACAGTCACCGAGGCGCCCGATTCTCATGTCCAGGAGGTGCCAAACAGT
CCGCCTTATTACGAGGAGCAGAATGTGCTTACCACGCCCATGGTGCGGGA
GCAGGAGCAGCAGAAGCGTCAGCAGCTTAAGGAGAACAACAAGCTACGAC
GACAGGCAGGAGATGTTATACTTGATGCTGGAGATATTCTCGTAGATAGT
TCGTCGCCCAAGGCGCAACGGACAAGCATCCAGCATAGTACGCAACCTGA
TGTGATGGTCCAGCCAATGATTATAAAGTCTGAGCCGGAGAACAGTTCCG
GACTGATGGATCTAATGACTCCCGCGAACGATCTGTACAGTGTTAACTTC
ATCAGTGAGGATATGCCAACGGATATTTTTGAAGACGCTCTGCTTCCCGA
CGGCGTGGAAGAGGCAGCCAAACTGGATGCCAATCAGGCCTCGACATCGA
AGGCAGCGGCCAAGGCGCAAGCATCTGAGGAGGAGGGCATGGCTGTGGCC
AAATACAGTGGCGCTGAGAACGGAAACAACCGCGATACCAACAACAGTCA
ACTCCTCAGGATGGCCTCAGTTGACGAACTCCACGGGCACTTGGAAAGCA
TGCAAGATGAGTTGGAAACACTGAAGGATCTGCTGCGTGGCGATGGGGTG
GCCATTGATCAGAACATGCTCATGGGTCTGTTTAACGACTCTGATCTAAT
GGACAACTATGGCCTATCGTTTCCCAATGACAGCATAAGCAGTGAAAAGA
AAGCACCCAGTGGCTCTGAACTGATTTCCTATCAGCCCATGTATGATCTG
TCCGACATTTTGGACACGGACGATGGCAACAATGACCAGGAGGCCAGCAG
GCGCCAGATGCAGACGCAAAGTTCGGTTTTAAATACGCCACGTCACGAGT
TGGCAAGCTTTCTAGACCAT
BO01267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2076 | CG5748-PA | 1..1511 | 17..1527 | 7495 | 99.7 | Plus |
| Hsf-RD | 2202 | CG5748-PD | 1..1511 | 17..1527 | 7495 | 99.7 | Plus |
| Hsf-RC | 2130 | CG5748-PC | 1..1511 | 17..1527 | 7495 | 99.7 | Plus |
| Hsf-RA | 2076 | CG5748-PA | 1594..2073 | 1523..2002 | 2385 | 99.8 | Plus |
| Hsf-RD | 2202 | CG5748-PD | 1975..2199 | 1778..2002 | 1125 | 100 | Plus |
| Hsf-RD | 2202 | CG5748-PD | 1594..1742 | 1523..1671 | 730 | 99.3 | Plus |
| Hsf-RD | 2202 | CG5748-PD | 1815..1920 | 1672..1777 | 530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2771 | CG5748-RA | 244..1754 | 17..1527 | 7495 | 99.7 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 244..1754 | 17..1527 | 7495 | 99.7 | Plus |
| Hsf-RC | 2838 | CG5748-RC | 257..1767 | 17..1527 | 7495 | 99.7 | Plus |
| Hsf-RA | 2771 | CG5748-RA | 1837..2316 | 1523..2002 | 2385 | 99.8 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 2218..2442 | 1778..2002 | 1125 | 100 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 1837..1985 | 1523..1671 | 730 | 99.3 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 2058..2163 | 1672..1777 | 530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18131793..18132941 | 1484..336 | 5730 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18133870..18134080 | 227..17 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18130758..18130908 | 2002..1852 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 18131460..18131608 | 1671..1523 | 730 | 99.3 | Minus |
| 2R | 25286936 | 2R | 18131282..18131387 | 1777..1672 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 18133004..18133114 | 335..225 | 510 | 97.3 | Minus |
| 2R | 25286936 | 2R | 18130970..18131045 | 1853..1778 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 18131691..18131734 | 1527..1484 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:50:13 has no hits.
BO01267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:01 Download gff for
BO01267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 1..1509 | 17..1525 | 99 | -> | Plus |
| Hsf-RC | 1597..1848 | 1526..1777 | 99 | -> | Plus |
| Hsf-RC | 1903..2130 | 1778..2006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:22 Download gff for
BO01267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RB | 2055..2394 | 1672..2014 | 98 | | Plus |
| Hsf-RB | 241..1746 | 17..1522 | 99 | <- | Plus |
| Hsf-RB | 1830..1982 | 1523..1671 | 96 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:58 Download gff for
BO01267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1765 | 17..1525 | 99 | -> | Plus |
| Hsf-RC | 1853..2104 | 1526..1777 | 99 | -> | Plus |
| Hsf-RC | 2159..2383 | 1778..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:01 Download gff for
BO01267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 241..1749 | 17..1525 | 99 | -> | Plus |
| Hsf-RC | 1837..2088 | 1526..1777 | 99 | -> | Plus |
| Hsf-RC | 2143..2376 | 1778..2014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:43 Download gff for
BO01267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1765 | 17..1525 | 99 | -> | Plus |
| Hsf-RC | 1853..2104 | 1526..1777 | 99 | -> | Plus |
| Hsf-RC | 2159..2383 | 1778..2004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:43 Download gff for
BO01267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18130756..18130906 | 1854..2004 | 98 | <- | Minus |
| 2R | 18130970..18131045 | 1778..1853 | 100 | <- | Minus |
| 2R | 18131282..18131387 | 1672..1777 | 100 | <- | Minus |
| 2R | 18131460..18131608 | 1523..1671 | 99 | <- | Minus |
| 2R | 18131696..18131734 | 1484..1522 | 100 | <- | Minus |
| 2R | 18131794..18132941 | 336..1483 | 99 | <- | Minus |
| 2R | 18133004..18133112 | 227..335 | 97 | <- | Minus |
| 2R | 18133871..18134080 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:58 Download gff for
BO01267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14019201..14019239 | 1484..1522 | 100 | <- | Minus |
| arm_2R | 14018475..14018550 | 1778..1853 | 100 | <- | Minus |
| arm_2R | 14018787..14018892 | 1672..1777 | 100 | <- | Minus |
| arm_2R | 14018261..14018411 | 1854..2004 | 98 | <- | Minus |
| arm_2R | 14018965..14019113 | 1523..1671 | 99 | <- | Minus |
| arm_2R | 14019299..14020446 | 336..1483 | 99 | <- | Minus |
| arm_2R | 14020509..14020617 | 227..335 | 97 | <- | Minus |
| arm_2R | 14021376..14021585 | 17..226 | 100 | | Minus |
BO01267.pep Sequence
Translation from 16 to 2020
> BO01267.pep
MSRSRSSAKAVQFKHESEEEEEDEEEQLPSRRMHSYGDAAAIGSGVPAFL
AKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASF
IRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRKIS
NNKNGDDKGVLKPEAMSKILTDVKVMRGRQDNLDSRFSAMKQENEVLWRE
IASLRQKHAKQQQIVNKLIQFLITIVQPSRNMSGVKRHVQLMINNTPEID
RARTTSETESESGGGPVIHELREELLDEVMNPSPAGYTAASHYDQESVSP
PAVERPRSNMSISSHNVDYSNQSVEDLLLQGNGTAGGNILVGGAASPMAQ
SVSQSPAQHDVYTVTEAPDSHVQEVPNSPPYYEEQNVLTTPMVREQEQQK
RQQLKENNKLRRQAGDVILDAGDILVDSSSPKAQRTSIQHSTQPDVMVQP
MIIKSEPENSSGLMDLMTPANDLYSVNFISEDMPTDIFEDALLPDGVEEA
AKLDANQASTSKAAAKAQASEEEGMAVAKYSGAENGNNRDTNNSQLLRMA
SVDELHGHLESMQDELETLKDLLRGDGVAIDQNMLMGLFNDSDLMDNYGL
SFPNDSISSEKKAPSGSELISYQPMYDLSDILDTDDGNNDQEASRRQMQT
QSSVLNTPRHELASFLDH
BO01267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-PA | 691 | CG5748-PA | 1..691 | 1..662 | 3340 | 95.8 | Plus |
| Hsf-PC | 709 | CG5748-PC | 1..709 | 1..662 | 3311 | 93.4 | Plus |
| Hsf-PB | 715 | CG5748-PB | 1..715 | 1..662 | 3305 | 92.6 | Plus |
| Hsf-PD | 733 | CG5748-PD | 1..733 | 1..662 | 3276 | 90.3 | Plus |
