Clone Sequence Records
BO01269.3prime Sequence
872 bp (847 high quality bases) assembled on 2005-11-30
> BO01269.3prime
ATGGTCTAGAAAGCTTGCGGATGTTAGGGACGTGCCATCCAGCAGCACCG
ACGCCACCTCCTCGTTCTGTTCTACGTACACTAGACGAGGATCCTCGCCA
AACTCCAGTCGCCCGTATCTGGCCACCAGCGGTGTCTTGTTGTTGCTCAC
TTGCGGTGCGCGCGGCCACTTCCTTTTGGGCTTCGTGTGCGTCAGCATGT
GGGACTTGAGGTTCGTTGACTGGGCGAAGCACTTGGAGCAGCCATCAATG
GGACAGTGGTAGGGCCTATCGCCAGTGTGTATCCGTACGTGGGTGCGCAG
ATTGAAGTCCAGCGAGAAGCGCTTGCCGCACCCCTCAAAGGTGCACTCAA
AGGGCTTCTCGCCGGTGTGCACCAGCTGGTGGCGCTTTAGCTTGGAGCTC
TCTACAAAGCTCTTGCCGCAGACGTTGCACACATGACCGCGCGGTCCGTG
CGTGTGCATGTGCTTGCGCATGGCCGAGTGGTTGCGAAACTCCTTGTTGC
AGCCGCGATGGGTGCAGCGAAACTTTGGCTCCTCATCCTCTTCGCCGGCC
GCGCCAGCTGCTCCCATGGCATTACCAGCCGTCTGATTGGCCACTGCAGT
CGGTAATTTGGTTACAATTGTGGGTCGTTGGGGTCGGGCTGGATTGCTGG
AAGCCACTAGTGGCGGTGGGGGATTTGGTGTCGCCACCTGAGCCGCCGCC
GTGAGTTGCCTCTTTGTCACCTTTGACTGATTTCCCGCACTTTTCAGTCG
CACATTGGTGCTGCTGTTCTGGAGCACTAGTTTTGGGAGAGCCGGCTGTG
GATTCGGTACACATCCGTTGACCTTCGATAGCGCTACCGACACAGTGGCT
GGGACTGGTCCCGGTGTCTGTA
BO01269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3445-PA | 2010 | phol-RA | 1154..2007 | 872..19 | 4220 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phol-RB | 3384 | CG3445-RB | 1801..2654 | 872..19 | 4240 | 99.8 | Minus |
| phol-RA | 3139 | CG3445-RA | 1801..2654 | 872..19 | 4240 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9453533..9454386 | 19..872 | 4240 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:48:10 has no hits.
BO01269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:04 Download gff for
BO01269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-PA | 1155..2010 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:11 Download gff for
BO01269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3445-PA | 1155..2010 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:55 Download gff for
BO01269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 1802..2659 | 12..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:01 Download gff for
BO01269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 1802..2659 | 12..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:01 Download gff for
BO01269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9453528..9454385 | 12..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:55 Download gff for
BO01269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9446628..9447485 | 12..871 | 99 | | Plus |
BO01269.5prime Sequence
790 bp (740 high quality bases) assembled on 2005-11-30
> BO01269.5prime
GAAGTTATCAGTCGACATGACAAGTCATCATCATCACGTCGGCGTCGGAG
GGAACTTCCAGCCTCAACTGCATCAGATACGAGCGCCCATCGTGAAGAAT
CTATCGCTGGCCGCTGCGGCGGTACCGTTGCCCCTGCACTCCGCCCCGTC
GTCGGCATACTTCACTCATGCACACCAGCCTACGGCGGCTACCATAGTCG
AGCAAGATCCGTACACCGTTTTGGCGGGCGATCCGATGGGCGAGGAAAGC
GAGAGCTTCCTGATCGAGGAGATCATCGACGACTATGATGATGAGGCTAA
TATCGTCGTAGACTCAGGCGAATTCTTTGAGCACTATGAATACTATCCGG
TGGATCGGCTGGACAGACTTACCTCGGTCACGGTGGCTACGGCAGATGCA
CTGCCGCCGCCGATCATCATGCAGCAGACCAGCGACGATGAGGAATTCAT
CGAGGAGGATGGACAGCAGATGACATCCTCCTGCGATGGCGATGGCGATG
AGGATGATGAGGCTACCGCGCCGGCTACGACAAATGCCTTCGAGATTGCC
TCCGAGATGCTAACCACCATCGAGGCCACAAACATCAAGGAGGAGCAGCT
CGAGAGCGACTTCTATATGAAGGCGACCGAGGATTCAAACAGTTCGAATG
GCCAGCTGCAGGATTTTAAGCTATTTGGAAGCAGTCGCGTCGAGAGGCCC
ATGGGAAATTCAGCGGCCAAGCGCTGGAAGCAAACAAAGGTACCCATACG
CATAACGCAGGATGAGTTNCATGTCACCCTTTGGTCCTCG
BO01269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3445-PA | 2010 | phol-RA | 1..774 | 17..790 | 3826 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phol-RB | 3384 | CG3445-RB | 648..1421 | 17..790 | 3844 | 99.7 | Plus |
| phol-RA | 3139 | CG3445-RA | 648..1421 | 17..790 | 3844 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9454766..9455539 | 790..17 | 3844 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:44:26 has no hits.
BO01269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:05 Download gff for
BO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:12 Download gff for
BO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3445-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:28 Download gff for
BO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 640..1421 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:29 Download gff for
BO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 640..1421 | 9..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:29 Download gff for
BO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9454766..9455547 | 9..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:28 Download gff for
BO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9447866..9448647 | 9..790 | 99 | | Minus |
BO01269.complete Sequence
2041 bp (2041 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629460
> BO01269.complete
GAAGTTATCAGTCGACATGACAAGTCATCATCATCACGTCGGCGTCGGAG
GGAACTTCCAGCCTCAACTGCATCAGATACGAGCGCCCATCGTGAAGAAT
CTATCGCTGGCCGCTGCGGCGGTACCGTTGCCCCTGCACTCCGCCCCGTC
GTCGGCATACTTCACTCATGCACACCAGCCTACGGCGGCTACCATAGTCG
AGCAAGATCCGTACACCGTTTTGGCGGGCGATCCGATGGGCGAGGAAAGC
GAGAGCTTCCTGATCGAGGAGATCATCGACGACTATGATGATGAGGCTAA
TATCGTCGTAGACTCAGGCGAATTCTTTGAGCACTATGAATACTATCCGG
TGGATCGGCTGGACAGACTTACCTCGGTCACGGTGGCTACGGCAGATGCA
CTGCCGCCGCCGATCATCATGCAGCAGACCAGCGACGATGAGGAATTCAT
CGAGGAGGATGGACAGCAGATGACATCCTCCTGCGATGGCGATGGCGATG
AGGATGATGAGGCTACCGCGCCGGCTACGACAAATGCCTTCGAGATTGCC
TCCGAGATGCTAACCACCATCGAGGCCACAAACATCAAGGAGGAGCAGCT
CGAGAGCGACTTCTATATGAAGGCGACCGAGGATTCAAACAGTTCGAATG
GCCAGCTGCAGGATTTTAAGCTATTTGGAAGCAGTCGCGTCGAGAGGCCC
ATGGGAAATTCAGCGGCCAAGCGCTGGAAGCAAACAAAGGTACCCATACG
CATAACGCAGGATGAGTTCAATGTCACCCTTTGGTCCTCGCTCAACTCGG
AGGATGAGGACGAGGAGGAGGAGTTGGAGGAACCACCTGGTTGTGCTGGC
ACCACATCCGTGACGTCCTCCTCCGCCGCCCAGAATGAAGGATCACCCAG
CATGCCAAAGCTTATTATTGACGAGCACATGATCAACCACGATGTTTTAA
GCGATGGCATCGGCAACGAGTACGTCATCCTACCCGATCCATTCAGCGCC
TCTGCGGTCACGGATGTGGAGGAGGTGGTTAATGCATTTATGGGCGATGT
CAAAGGCGAGGAGGACAGCCAGCCGCTAAGTGAACAGTTGATCTATGCGG
AAAACCAGTTGGAAGAAGCTTATGGTAACATCGAGCTTATCGAGAACATG
CCGAATAATGTGGAGCTGATACAGACACCGGGACCAGGTCCAGCCACTGT
GTCGGTAGCGCTATCGAAGGTCAACGGATGTGTACCGAATCCACAGCCGG
CTCTCCCAAAACTAGTGCTCCAGAACAGCAGCACCAATGTGCGACTGAAA
AGTGCGGGAAATCAGTCAAAGGTGACAAAGAGGCAACTCACGGCGGCGGC
TCAGGTGGCGACACCAAATCCCCCACCGCCACTAGTGGCTTCCAGCAATC
CAGCCCGACCCCAACGACCCACAATTGTAACCAAATTACCGACTGCAGTG
GCCAATCAGACGGCTGGTAATGCCATGGGAGCAGCTGGCGCGGCCGGCGA
AGAGGATGAGGAGCCAAAGTTTCGCTGCACCCATCGCGGCTGCAACAAGG
AGTTTCGCAACCACTCGGCCATGCGCAAGCACATGCACACGCACGGACCG
CGCGGTCATGTGTGCAACGTCTGCGGCAAGAGCTTTGTAGAGAGCTCCAA
GCTAAAGCGCCACCAGCTGGTGCACACCGGCGAGAAGCCCTTTGAGTGCA
CCTTTGAGGGGTGCGGCAAGCGCTTCTCGCTGGACTTCAATCTGCGCACC
CACGTACGGATACACACTGGCGATAGGCCCTACCACTGTCCCATTGATGG
CTGCTCCAAGTGCTTCGCCCAGTCAACGAACCTCAAGTCCCACATGCTGA
CGCACACGAAGCCCAAAAGGAAGTGGCCGCGCGCACCGCAAGTGAGCAAC
AACAAGACACCGCTGGTGGCCAGATACGGGCGACTGGAGTTTGGCGAGGA
TCCTCGTCTAGTGTACGTAGAACAGAACGAGGAGGTGGCGTCGGTGCTGC
TGGATGGCACGTCCCTAACATCCGCAAGCTTTCTAGACCAT
BO01269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phol-RB | 2010 | CG3445-PB | 1..2007 | 17..2023 | 10035 | 100 | Plus |
| phol-RA | 2010 | CG3445-PA | 1..2007 | 17..2023 | 10035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phol-RB | 3384 | CG3445-RB | 648..2654 | 17..2023 | 10035 | 100 | Plus |
| phol-RA | 3139 | CG3445-RA | 648..2654 | 17..2023 | 10035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9453533..9455539 | 2023..17 | 10035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:23:46 has no hits.
BO01269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:02 Download gff for
BO01269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 1..2010 | 17..2027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:23 Download gff for
BO01269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 615..2634 | 9..2030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:38 Download gff for
BO01269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 648..2654 | 17..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:02 Download gff for
BO01269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 615..2634 | 9..2030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:02 Download gff for
BO01269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phol-RA | 648..2654 | 17..2025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:02 Download gff for
BO01269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9453531..9455539 | 17..2025 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:38 Download gff for
BO01269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9446631..9448639 | 17..2025 | 99 | | Minus |
BO01269.pep Sequence
Translation from 16 to 2041
> BO01269.pep
MTSHHHHVGVGGNFQPQLHQIRAPIVKNLSLAAAAVPLPLHSAPSSAYFT
HAHQPTAATIVEQDPYTVLAGDPMGEESESFLIEEIIDDYDDEANIVVDS
GEFFEHYEYYPVDRLDRLTSVTVATADALPPPIIMQQTSDDEEFIEEDGQ
QMTSSCDGDGDEDDEATAPATTNAFEIASEMLTTIEATNIKEEQLESDFY
MKATEDSNSSNGQLQDFKLFGSSRVERPMGNSAAKRWKQTKVPIRITQDE
FNVTLWSSLNSEDEDEEEELEEPPGCAGTTSVTSSSAAQNEGSPSMPKLI
IDEHMINHDVLSDGIGNEYVILPDPFSASAVTDVEEVVNAFMGDVKGEED
SQPLSEQLIYAENQLEEAYGNIELIENMPNNVELIQTPGPGPATVSVALS
KVNGCVPNPQPALPKLVLQNSSTNVRLKSAGNQSKVTKRQLTAAAQVATP
NPPPPLVASSNPARPQRPTIVTKLPTAVANQTAGNAMGAAGAAGEEDEEP
KFRCTHRGCNKEFRNHSAMRKHMHTHGPRGHVCNVCGKSFVESSKLKRHQ
LVHTGEKPFECTFEGCGKRFSLDFNLRTHVRIHTGDRPYHCPIDGCSKCF
AQSTNLKSHMLTHTKPKRKWPRAPQVSNNKTPLVARYGRLEFGEDPRLVY
VEQNEEVASVLLDGTSLTSASFLDH
BO01269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phol-PB | 669 | CG3445-PB | 1..669 | 1..669 | 3516 | 100 | Plus |
| phol-PA | 669 | CG3445-PA | 1..669 | 1..669 | 3516 | 100 | Plus |
| pho-PB | 520 | CG17743-PB | 354..473 | 499..618 | 551 | 80 | Plus |
| pho-PA | 520 | CG17743-PA | 354..473 | 499..618 | 551 | 80 | Plus |
| Aef1-PB | 308 | CG5683-PB | 83..294 | 406..617 | 284 | 33.8 | Plus |
