Clone Sequence Records
BO01273.3prime Sequence
781 bp (780 high quality bases) assembled on 2005-11-30
> BO01273.3prime
ATGGTCTAGAAAGCTTGCGCTTGCCCAGCTCTGCAAGTAGGGATTGGTTT
GGACCAGCTGAGCTGGAAGGACGCCCCCGTTGCGGAATCCCAAGTCGAAG
CGAGGCTGAACTCCCATCTGACTGGTCGAGGTGGATCCAGAGTTCCGGAA
GGCGGTGCCACTGTAAGGATGCTTAAGGCAGCCATAGACCTCGCGGTAAC
GCCCATACAGAGTGCCATAGGAGACGCCCAGAATTCTGGCGGCCTTCTTC
ATCTCGAGTCTTTTGTTTTTAATGGCGTCCAACACGCGCTTGGTGAATGG
CTCTTCCCAGAACTGTGGACGCCGCCCCTTAGCCAGGTAGTCGTCCATCT
TGATGACGTCCTGCCACTGCGACAGCTCCTCGTTGGTCAGTCGCAGTTCG
GCGGCATCGTAGTCCTCCAGCTTGATGTCGGGATAGTCGGCGGCGGCACC
GGTTCCACTGCCACTTACATCCTGACCACCGTTTCCGTTTCCGGCTGAGG
CATTTGCCACTGCAGCGGCGGCTGCTGCAACGGCCACAGCTGCGGTGGCG
GCGGCACTGGCCACATTCGGTGCAAATTCGTGGGCCATCAGCATGCCATG
TTCGTTGATCAAGTAGGAGGATCCAAGCGATCCGGATCCAGTTCCAGAAC
CGGAGCCACCGCCTGCGGCAGTCACGCCTCCCTCGTATTTGCAGGCAAAA
CTAGCTGGTATGACGACCGTAGGACGCGGCGACTCTGCCCTATTTGCCAC
CAGATGCTCGTTCTCGATCTCTTCCACCGGT
BO01273.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3726-PA | 2031 | CG3726-RA | 1266..2028 | 781..19 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3726-RA | 2901 | CG3726-RA | 1835..2597 | 781..19 | 3815 | 100 | Minus |
CG3726-RB | 3129 | CG3726-RB | 1898..2625 | 781..54 | 3640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5940120..5940617 | 781..284 | 2490 | 100 | Minus |
X | 23542271 | X | 5940972..5941096 | 285..161 | 625 | 100 | Minus |
X | 23542271 | X | 5941163..5941271 | 162..54 | 545 | 100 | Minus |
X | 23542271 | X | 5941325..5941360 | 54..19 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:07:59 has no hits.
BO01273.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:11 Download gff for
BO01273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-PA | 1266..2031 | 16..781 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:21 Download gff for
BO01273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-PA | 1266..2031 | 16..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:05 Download gff for
BO01273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 1835..2602 | 14..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:15 Download gff for
BO01273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 1835..2602 | 14..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:15 Download gff for
BO01273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5940120..5940615 | 286..781 | 100 | -> | Minus |
X | 5940972..5941096 | 161..285 | 100 | -> | Minus |
X | 5941165..5941271 | 54..160 | 100 | -> | Minus |
X | 5941326..5941365 | 14..53 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:05 Download gff for
BO01273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5834153..5834648 | 286..781 | 100 | -> | Minus |
arm_X | 5835005..5835129 | 161..285 | 100 | -> | Minus |
arm_X | 5835198..5835304 | 54..160 | 100 | -> | Minus |
arm_X | 5835359..5835398 | 14..53 | 95 | | Minus |
BO01273.5prime Sequence
863 bp (729 high quality bases) assembled on 2005-11-30
> BO01273.5prime
GAAGTTATCAGTCGACATGCTGCCGCAGCAGTACTGCCTAAGGTGGAAGT
ACCACCATAGCAATCTGCAGACCATGTTCTCCCAGCTGCTGGATCGCGGT
TGCTTCTGCGACGTGACCCTGGCCTGCGAGGGTCAGCTCATCCGCGCCCA
TCGCGTCGTCCTGTGCGCCTGCAGCACCTTCTTCGACGCCGTGCTCTCCA
ACTACGCCAGTGAACGTGATCCGATCATCATCATGAAGGACGTTACCTTT
GCGGAGGTCAAATGCCTCATCGAGTTCATGTACAAGGGCGAGATCAACGT
GGAGCATTCCAGCCTTCCCTCGCTGCTGAAGACCGCCGATGACCTGAAGA
TCAAGGGCCTGGCCGAGGTGACCTGGCGCGATGACGAAGACGGACCGCCG
CCACCAATGGCCGCCGCCGAGTTTCACTCACCGCCGCGCAGCTTGGCAGA
GAGTTACGCCCAGGACCTAATCCTTCAGCATCAGCAACAGCAACAGCAGG
GCCCAGCTGCTCCACCCTTGAATTTGCACAGCTCTGCTGCGCTCTTGGAG
AGAGATCGAGAACGGGAAAGGGAACGTGACCGGGAGCGTCTCTCGCCGGG
GATGGAGGGTGTACTGGGTCGCATGCCCGTGATGACGCCGCTGACTGGCG
CATCGGGTTCGGCAGGAGTGGGTTCGGTATCCGGTGGCACATCGCTCGAG
GGCGTCGCTCCCGTGGAGCACTTTCTGGGTCCCCAACGCAGCGTGGTCGT
CCGCCGCTAGACGATGCCTATGATGTTTTCAATGTACGNCAGCTGGCCCA
GTATGCCGCCAATCTGGAGCCCGCCCAGCGTGCCTACTTGGAGACGGCGC
GTCACTTTACGGA
BO01273.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3726-PA | 2031 | CG3726-RA | 1..724 | 17..740 | 3595 | 99.8 | Plus |
CG3726-PA | 2031 | CG3726-RA | 725..848 | 740..863 | 576 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3726-RB | 3129 | CG3726-RB | 632..1480 | 16..863 | 4179 | 99.5 | Plus |
CG3726-RA | 2901 | CG3726-RA | 569..1417 | 16..863 | 4179 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5939035..5939517 | 304..785 | 2335 | 99.4 | Plus |
X | 23542271 | X | 5938669..5938960 | 16..307 | 1460 | 100 | Plus |
X | 23542271 | X | 5939630..5939702 | 791..863 | 365 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2392 | 476..498 | 115 | 100 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1592 | 472..508 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6862..6898 | 460..499 | 112 | 80 | Plus |
BO01273.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:12 Download gff for
BO01273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:23 Download gff for
BO01273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:56 Download gff for
BO01273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 563..1416 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:13 Download gff for
BO01273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 563..1416 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:13 Download gff for
BO01273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5938663..5938960 | 9..307 | 98 | -> | Plus |
X | 5939039..5939517 | 308..785 | 99 | -> | Plus |
X | 5939625..5939701 | 786..862 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:56 Download gff for
BO01273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5832696..5832993 | 9..307 | 98 | -> | Plus |
arm_X | 5833072..5833550 | 308..785 | 99 | -> | Plus |
arm_X | 5833658..5833734 | 786..862 | 97 | | Plus |
BO01273.complete Sequence
2062 bp (2062 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629462
> BO01273.complete
GAAGTTATCAGTCGACATGCTGCCGCAGCAGTACTGCCTAAGGTGGAAGT
ACCACCATAGCAATCTGCAGACCATGTTCTCCCAGCTGCTGGATCGCGGT
TGCTTCTGCGACGTGACCCTGGCCTGCGAGGGTCAGCTCATCCGCGCCCA
TCGCGTCGTCCTGTGCGCCTGCAGCACCTTCTTCGACGCCGTGCTCTCCA
ACTACGCCAGTGAACGTGATCCGATCATCATCATGAAGGACGTTACCTTT
GCGGAGGTCAAATGCCTCATCGAGTTCATGTACAAGGGCGAGATCAACGT
GGAGCATTCCAGCCTTCCCTCGCTGCTGAAGACCGCCGATGACCTGAAGA
TCAAGGGCCTGGCCGAGGTGACCTGGCGCGATGACGAAGACGGACCGCCG
CCACCAATGGCCGCCGCCGAGTTTCACTCACCGCCGCGCAGCTTGGCAGA
GAGTTACGCCCAGGACCTAATCCTTCAGCATCAGCAACAGCAACAGCAGG
GCCCAGCTGCTCCACCCTTGAATTTGCACAGCTCTGCTGCGCTCTTGGAG
AGAGATCGAGAACGGGAAAGGGAACGTGACCGGGAGCGTCTCTCGCCGGG
GATGGAGGGTGTACTGGGTCGCATGCCCGTGATGACGCCGCTGACTGGCG
CATCGGGTTCGGCAGGAGTGGGTTCGGTATCCGGTGGCACATCGCTCGAG
GGCGTCGCTCCCGTGGAGCACTTTCTGGGTCCCAAACGCAAGCGTGGTCG
TCCGCCGCTAGACGATGCCTATGATGTTTTCAATGTACGCAAGCTGGCCC
AGTATGCCGCCAATCTGGAGCCCGCCCAGCGTGCCTACTTGGAGACGGCG
CGTCACTTTACGGAGGAGCCGCCACTGGCCGCCCATGCCGCCTCGATGGC
CTCCCCACCCGCCGCCTGCCCGCCGAAACAGCGCCAGCGTCTACGTCACC
AGCAGCAGCAGCAGCAACAGCTGCTACAGTCGGAGAGCAGTGACCAGGAG
CAGCCGGCTGCTGGCCAGGATTGGTCCAATTTGGAGCCAAATGGCAGTGC
CACGCCCAAACTGCTCAGCGATGGCGATGCTAACAAGCAGGAAACGGAGG
GCGGTGATGAATCGCTACCGGCAGTGCTAACCACCGCCAGCAGCAGCGGC
ACCAAAAAGCTGGAAAAGATAGGCGAGCGTCGCGAACGCCATGGCAAATT
ACGTCATGCTCGTCGCCTTTATGAGAAGTCTGGAGAGGATGAGGTTGATC
CGCCCAAGGAGGAGCCCGATGAGCTGCCGCAACCGGTGGAAGAGATCGAG
AACGAGCATCTGGTGGCAAATAGGGCAGAGTCGCCGCGTCCTACGGTCGT
CATACCAGCTAGTTTTGCCTGCAAATACGAGGGAGGCGTGACTGCCGCAG
GCGGTGGCTCCGGTTCTGGAACTGGATCCGGATCGCTTGGATCCTCCTAC
TTGATCAACGAACATGGCATGCTGATGGCCCACGAATTTGCACCGAATGT
GGCCAGTGCCGCCGCCACCGCAGCTGTGGCCGTTGCAGCAGCCGCCGCTG
CAGTGGCAAATGCCTCAGCCGGAAACGGAAACGGTGGTCAGGATGTAAGT
GGCAGTGGAACCGGTGCCGCCGCCGACTATCCCGACATCAAGCTGGAGGA
CTACGATGCCGCCGAACTGCGACTGACCAACGAGGAGCTGTCGCAGTGGC
AGGACGTCATCAAGATGGACGACTACCTGGCTAAGGGGCGGCGTCCACAG
TTCTGGGAAGAGCCATTCACCAAGCGCGTGTTGGACGCCATTAAAAACAA
AAGACTCGAGATGAAGAAGGCCGCCAGAATTCTGGGCGTCTCCTATGGCA
CTCTGTATGGGCGTTACCGCGAGGTCTATGGCTGCCTTAAGCATCCTTAC
AGTGGCACCGCCTTCCGGAACTCTGGATCCACCTCGACCAGTCAGATGGG
AGTTCAGCCTCGCTTCGACTTGGGATTCCGCAACGGGGGCGTCCTTCCAG
CTCAGCTGGTCCAAACCAATCCCTACTTGCAGAGCTGGGCAAGCGCAAGC
TTTCTAGACCAT
BO01273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3726-RA | 2031 | CG3726-PA | 1..2028 | 17..2044 | 10140 | 100 | Plus |
CG3726-RB | 2049 | CG3726-PB | 1..1993 | 17..2009 | 9965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3726-RA | 2901 | CG3726-RA | 569..2597 | 16..2044 | 10145 | 100 | Plus |
CG3726-RB | 3129 | CG3726-RB | 632..2625 | 16..2009 | 9970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5939625..5940617 | 787..1779 | 4965 | 100 | Plus |
X | 23542271 | X | 5939035..5939517 | 304..786 | 2400 | 99.8 | Plus |
X | 23542271 | X | 5938669..5938960 | 16..307 | 1460 | 100 | Plus |
X | 23542271 | X | 5940972..5941096 | 1778..1902 | 625 | 100 | Plus |
X | 23542271 | X | 5941163..5941271 | 1901..2009 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2392 | 476..498 | 115 | 100 | Plus |
BO01273.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:06 Download gff for
BO01273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 1..2031 | 17..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:27 Download gff for
BO01273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 546..2585 | 9..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:54 Download gff for
BO01273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 570..2597 | 17..2046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:06 Download gff for
BO01273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 546..2585 | 9..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:57 Download gff for
BO01273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3726-RA | 570..2597 | 17..2046 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:57 Download gff for
BO01273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5940972..5941096 | 1778..1902 | 100 | -> | Plus |
X | 5941165..5941271 | 1903..2009 | 100 | -> | Plus |
X | 5941326..5941360 | 2010..2046 | 94 | | Plus |
X | 5938670..5938960 | 17..307 | 100 | -> | Plus |
X | 5939039..5939517 | 308..786 | 100 | -> | Plus |
X | 5939625..5940615 | 787..1777 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:54 Download gff for
BO01273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5835005..5835129 | 1778..1902 | 100 | -> | Plus |
arm_X | 5835198..5835304 | 1903..2009 | 100 | -> | Plus |
arm_X | 5835359..5835393 | 2010..2046 | 94 | | Plus |
arm_X | 5832703..5832993 | 17..307 | 100 | -> | Plus |
arm_X | 5833072..5833550 | 308..786 | 100 | -> | Plus |
arm_X | 5833658..5834648 | 787..1777 | 100 | -> | Plus |
BO01273.pep Sequence
Translation from 16 to 2062
> BO01273.pep
MLPQQYCLRWKYHHSNLQTMFSQLLDRGCFCDVTLACEGQLIRAHRVVLC
ACSTFFDAVLSNYASERDPIIIMKDVTFAEVKCLIEFMYKGEINVEHSSL
PSLLKTADDLKIKGLAEVTWRDDEDGPPPPMAAAEFHSPPRSLAESYAQD
LILQHQQQQQQGPAAPPLNLHSSAALLERDRERERERDRERLSPGMEGVL
GRMPVMTPLTGASGSAGVGSVSGGTSLEGVAPVEHFLGPKRKRGRPPLDD
AYDVFNVRKLAQYAANLEPAQRAYLETARHFTEEPPLAAHAASMASPPAA
CPPKQRQRLRHQQQQQQQLLQSESSDQEQPAAGQDWSNLEPNGSATPKLL
SDGDANKQETEGGDESLPAVLTTASSSGTKKLEKIGERRERHGKLRHARR
LYEKSGEDEVDPPKEEPDELPQPVEEIENEHLVANRAESPRPTVVIPASF
ACKYEGGVTAAGGGSGSGTGSGSLGSSYLINEHGMLMAHEFAPNVASAAA
TAAVAVAAAAAAVANASAGNGNGGQDVSGSGTGAAADYPDIKLEDYDAAE
LRLTNEELSQWQDVIKMDDYLAKGRRPQFWEEPFTKRVLDAIKNKRLEMK
KAARILGVSYGTLYGRYREVYGCLKHPYSGTAFRNSGSTSTSQMGVQPRF
DLGFRNGGVLPAQLVQTNPYLQSWASASFLDH
BO01273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3726-PA | 676 | CG3726-PA | 1..676 | 1..676 | 3524 | 100 | Plus |
CG3726-PB | 682 | CG3726-PB | 1..664 | 1..664 | 3458 | 100 | Plus |
bab2-PB | 1066 | CG9102-PB | 196..406 | 4..217 | 342 | 39.7 | Plus |
bab2-PA | 1067 | CG9102-PA | 196..406 | 4..217 | 342 | 39.7 | Plus |
lolal-PH | 127 | CG5738-PH | 6..118 | 4..117 | 304 | 51.8 | Plus |