Clone BO01273 Report

Search the DGRC for BO01273

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG3726-RA
Protein status:BO01273.pep: validated full length
Sequenced Size:2062

Clone Sequence Records

BO01273.3prime Sequence

781 bp (780 high quality bases) assembled on 2005-11-30

> BO01273.3prime
ATGGTCTAGAAAGCTTGCGCTTGCCCAGCTCTGCAAGTAGGGATTGGTTT
GGACCAGCTGAGCTGGAAGGACGCCCCCGTTGCGGAATCCCAAGTCGAAG
CGAGGCTGAACTCCCATCTGACTGGTCGAGGTGGATCCAGAGTTCCGGAA
GGCGGTGCCACTGTAAGGATGCTTAAGGCAGCCATAGACCTCGCGGTAAC
GCCCATACAGAGTGCCATAGGAGACGCCCAGAATTCTGGCGGCCTTCTTC
ATCTCGAGTCTTTTGTTTTTAATGGCGTCCAACACGCGCTTGGTGAATGG
CTCTTCCCAGAACTGTGGACGCCGCCCCTTAGCCAGGTAGTCGTCCATCT
TGATGACGTCCTGCCACTGCGACAGCTCCTCGTTGGTCAGTCGCAGTTCG
GCGGCATCGTAGTCCTCCAGCTTGATGTCGGGATAGTCGGCGGCGGCACC
GGTTCCACTGCCACTTACATCCTGACCACCGTTTCCGTTTCCGGCTGAGG
CATTTGCCACTGCAGCGGCGGCTGCTGCAACGGCCACAGCTGCGGTGGCG
GCGGCACTGGCCACATTCGGTGCAAATTCGTGGGCCATCAGCATGCCATG
TTCGTTGATCAAGTAGGAGGATCCAAGCGATCCGGATCCAGTTCCAGAAC
CGGAGCCACCGCCTGCGGCAGTCACGCCTCCCTCGTATTTGCAGGCAAAA
CTAGCTGGTATGACGACCGTAGGACGCGGCGACTCTGCCCTATTTGCCAC
CAGATGCTCGTTCTCGATCTCTTCCACCGGT

BO01273.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-PA 2031 CG3726-RA 1266..2028 781..19 3815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-RA 2901 CG3726-RA 1835..2597 781..19 3815 100 Minus
CG3726-RB 3129 CG3726-RB 1898..2625 781..54 3640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5940120..5940617 781..284 2490 100 Minus
X 23542271 X 5940972..5941096 285..161 625 100 Minus
X 23542271 X 5941163..5941271 162..54 545 100 Minus
X 23542271 X 5941325..5941360 54..19 180 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:07:59 has no hits.

BO01273.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:11 Download gff for BO01273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-PA 1266..2031 16..781 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:21 Download gff for BO01273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-PA 1266..2031 16..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:05 Download gff for BO01273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 1835..2602 14..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:15 Download gff for BO01273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 1835..2602 14..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:15 Download gff for BO01273.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5940120..5940615 286..781 100 -> Minus
X 5940972..5941096 161..285 100 -> Minus
X 5941165..5941271 54..160 100 -> Minus
X 5941326..5941365 14..53 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:05 Download gff for BO01273.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5834153..5834648 286..781 100 -> Minus
arm_X 5835005..5835129 161..285 100 -> Minus
arm_X 5835198..5835304 54..160 100 -> Minus
arm_X 5835359..5835398 14..53 95   Minus

BO01273.5prime Sequence

863 bp (729 high quality bases) assembled on 2005-11-30

> BO01273.5prime
GAAGTTATCAGTCGACATGCTGCCGCAGCAGTACTGCCTAAGGTGGAAGT
ACCACCATAGCAATCTGCAGACCATGTTCTCCCAGCTGCTGGATCGCGGT
TGCTTCTGCGACGTGACCCTGGCCTGCGAGGGTCAGCTCATCCGCGCCCA
TCGCGTCGTCCTGTGCGCCTGCAGCACCTTCTTCGACGCCGTGCTCTCCA
ACTACGCCAGTGAACGTGATCCGATCATCATCATGAAGGACGTTACCTTT
GCGGAGGTCAAATGCCTCATCGAGTTCATGTACAAGGGCGAGATCAACGT
GGAGCATTCCAGCCTTCCCTCGCTGCTGAAGACCGCCGATGACCTGAAGA
TCAAGGGCCTGGCCGAGGTGACCTGGCGCGATGACGAAGACGGACCGCCG
CCACCAATGGCCGCCGCCGAGTTTCACTCACCGCCGCGCAGCTTGGCAGA
GAGTTACGCCCAGGACCTAATCCTTCAGCATCAGCAACAGCAACAGCAGG
GCCCAGCTGCTCCACCCTTGAATTTGCACAGCTCTGCTGCGCTCTTGGAG
AGAGATCGAGAACGGGAAAGGGAACGTGACCGGGAGCGTCTCTCGCCGGG
GATGGAGGGTGTACTGGGTCGCATGCCCGTGATGACGCCGCTGACTGGCG
CATCGGGTTCGGCAGGAGTGGGTTCGGTATCCGGTGGCACATCGCTCGAG
GGCGTCGCTCCCGTGGAGCACTTTCTGGGTCCCCAACGCAGCGTGGTCGT
CCGCCGCTAGACGATGCCTATGATGTTTTCAATGTACGNCAGCTGGCCCA
GTATGCCGCCAATCTGGAGCCCGCCCAGCGTGCCTACTTGGAGACGGCGC
GTCACTTTACGGA

BO01273.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-PA 2031 CG3726-RA 1..724 17..740 3595 99.8 Plus
CG3726-PA 2031 CG3726-RA 725..848 740..863 576 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-RB 3129 CG3726-RB 632..1480 16..863 4179 99.5 Plus
CG3726-RA 2901 CG3726-RA 569..1417 16..863 4179 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5939035..5939517 304..785 2335 99.4 Plus
X 23542271 X 5938669..5938960 16..307 1460 100 Plus
X 23542271 X 5939630..5939702 791..863 365 100 Plus
Blast to na_te.dros performed 2015-02-11 04:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2392 476..498 115 100 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1556..1592 472..508 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6862..6898 460..499 112 80 Plus

BO01273.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:12 Download gff for BO01273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-PA 1..847 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:23 Download gff for BO01273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-PA 1..847 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:56 Download gff for BO01273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 563..1416 9..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:13 Download gff for BO01273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 563..1416 9..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:13 Download gff for BO01273.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5938663..5938960 9..307 98 -> Plus
X 5939039..5939517 308..785 99 -> Plus
X 5939625..5939701 786..862 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:56 Download gff for BO01273.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5832696..5832993 9..307 98 -> Plus
arm_X 5833072..5833550 308..785 99 -> Plus
arm_X 5833658..5833734 786..862 97   Plus

BO01273.complete Sequence

2062 bp (2062 high quality bases) assembled on 2006-04-26

GenBank Submission: FJ629462

> BO01273.complete
GAAGTTATCAGTCGACATGCTGCCGCAGCAGTACTGCCTAAGGTGGAAGT
ACCACCATAGCAATCTGCAGACCATGTTCTCCCAGCTGCTGGATCGCGGT
TGCTTCTGCGACGTGACCCTGGCCTGCGAGGGTCAGCTCATCCGCGCCCA
TCGCGTCGTCCTGTGCGCCTGCAGCACCTTCTTCGACGCCGTGCTCTCCA
ACTACGCCAGTGAACGTGATCCGATCATCATCATGAAGGACGTTACCTTT
GCGGAGGTCAAATGCCTCATCGAGTTCATGTACAAGGGCGAGATCAACGT
GGAGCATTCCAGCCTTCCCTCGCTGCTGAAGACCGCCGATGACCTGAAGA
TCAAGGGCCTGGCCGAGGTGACCTGGCGCGATGACGAAGACGGACCGCCG
CCACCAATGGCCGCCGCCGAGTTTCACTCACCGCCGCGCAGCTTGGCAGA
GAGTTACGCCCAGGACCTAATCCTTCAGCATCAGCAACAGCAACAGCAGG
GCCCAGCTGCTCCACCCTTGAATTTGCACAGCTCTGCTGCGCTCTTGGAG
AGAGATCGAGAACGGGAAAGGGAACGTGACCGGGAGCGTCTCTCGCCGGG
GATGGAGGGTGTACTGGGTCGCATGCCCGTGATGACGCCGCTGACTGGCG
CATCGGGTTCGGCAGGAGTGGGTTCGGTATCCGGTGGCACATCGCTCGAG
GGCGTCGCTCCCGTGGAGCACTTTCTGGGTCCCAAACGCAAGCGTGGTCG
TCCGCCGCTAGACGATGCCTATGATGTTTTCAATGTACGCAAGCTGGCCC
AGTATGCCGCCAATCTGGAGCCCGCCCAGCGTGCCTACTTGGAGACGGCG
CGTCACTTTACGGAGGAGCCGCCACTGGCCGCCCATGCCGCCTCGATGGC
CTCCCCACCCGCCGCCTGCCCGCCGAAACAGCGCCAGCGTCTACGTCACC
AGCAGCAGCAGCAGCAACAGCTGCTACAGTCGGAGAGCAGTGACCAGGAG
CAGCCGGCTGCTGGCCAGGATTGGTCCAATTTGGAGCCAAATGGCAGTGC
CACGCCCAAACTGCTCAGCGATGGCGATGCTAACAAGCAGGAAACGGAGG
GCGGTGATGAATCGCTACCGGCAGTGCTAACCACCGCCAGCAGCAGCGGC
ACCAAAAAGCTGGAAAAGATAGGCGAGCGTCGCGAACGCCATGGCAAATT
ACGTCATGCTCGTCGCCTTTATGAGAAGTCTGGAGAGGATGAGGTTGATC
CGCCCAAGGAGGAGCCCGATGAGCTGCCGCAACCGGTGGAAGAGATCGAG
AACGAGCATCTGGTGGCAAATAGGGCAGAGTCGCCGCGTCCTACGGTCGT
CATACCAGCTAGTTTTGCCTGCAAATACGAGGGAGGCGTGACTGCCGCAG
GCGGTGGCTCCGGTTCTGGAACTGGATCCGGATCGCTTGGATCCTCCTAC
TTGATCAACGAACATGGCATGCTGATGGCCCACGAATTTGCACCGAATGT
GGCCAGTGCCGCCGCCACCGCAGCTGTGGCCGTTGCAGCAGCCGCCGCTG
CAGTGGCAAATGCCTCAGCCGGAAACGGAAACGGTGGTCAGGATGTAAGT
GGCAGTGGAACCGGTGCCGCCGCCGACTATCCCGACATCAAGCTGGAGGA
CTACGATGCCGCCGAACTGCGACTGACCAACGAGGAGCTGTCGCAGTGGC
AGGACGTCATCAAGATGGACGACTACCTGGCTAAGGGGCGGCGTCCACAG
TTCTGGGAAGAGCCATTCACCAAGCGCGTGTTGGACGCCATTAAAAACAA
AAGACTCGAGATGAAGAAGGCCGCCAGAATTCTGGGCGTCTCCTATGGCA
CTCTGTATGGGCGTTACCGCGAGGTCTATGGCTGCCTTAAGCATCCTTAC
AGTGGCACCGCCTTCCGGAACTCTGGATCCACCTCGACCAGTCAGATGGG
AGTTCAGCCTCGCTTCGACTTGGGATTCCGCAACGGGGGCGTCCTTCCAG
CTCAGCTGGTCCAAACCAATCCCTACTTGCAGAGCTGGGCAAGCGCAAGC
TTTCTAGACCAT

BO01273.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-RA 2031 CG3726-PA 1..2028 17..2044 10140 100 Plus
CG3726-RB 2049 CG3726-PB 1..1993 17..2009 9965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-RA 2901 CG3726-RA 569..2597 16..2044 10145 100 Plus
CG3726-RB 3129 CG3726-RB 632..2625 16..2009 9970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5939625..5940617 787..1779 4965 100 Plus
X 23542271 X 5939035..5939517 304..786 2400 99.8 Plus
X 23542271 X 5938669..5938960 16..307 1460 100 Plus
X 23542271 X 5940972..5941096 1778..1902 625 100 Plus
X 23542271 X 5941163..5941271 1901..2009 545 100 Plus
Blast to na_te.dros performed 2014-11-27 23:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2392 476..498 115 100 Plus

BO01273.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:06 Download gff for BO01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 1..2031 17..2047 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:27 Download gff for BO01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 546..2585 9..2049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:54 Download gff for BO01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 570..2597 17..2046 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:06 Download gff for BO01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 546..2585 9..2049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:57 Download gff for BO01273.complete
Subject Subject Range Query Range Percent Splice Strand
CG3726-RA 570..2597 17..2046 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:57 Download gff for BO01273.complete
Subject Subject Range Query Range Percent Splice Strand
X 5940972..5941096 1778..1902 100 -> Plus
X 5941165..5941271 1903..2009 100 -> Plus
X 5941326..5941360 2010..2046 94   Plus
X 5938670..5938960 17..307 100 -> Plus
X 5939039..5939517 308..786 100 -> Plus
X 5939625..5940615 787..1777 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:54 Download gff for BO01273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5835005..5835129 1778..1902 100 -> Plus
arm_X 5835198..5835304 1903..2009 100 -> Plus
arm_X 5835359..5835393 2010..2046 94   Plus
arm_X 5832703..5832993 17..307 100 -> Plus
arm_X 5833072..5833550 308..786 100 -> Plus
arm_X 5833658..5834648 787..1777 100 -> Plus

BO01273.pep Sequence

Translation from 16 to 2062

> BO01273.pep
MLPQQYCLRWKYHHSNLQTMFSQLLDRGCFCDVTLACEGQLIRAHRVVLC
ACSTFFDAVLSNYASERDPIIIMKDVTFAEVKCLIEFMYKGEINVEHSSL
PSLLKTADDLKIKGLAEVTWRDDEDGPPPPMAAAEFHSPPRSLAESYAQD
LILQHQQQQQQGPAAPPLNLHSSAALLERDRERERERDRERLSPGMEGVL
GRMPVMTPLTGASGSAGVGSVSGGTSLEGVAPVEHFLGPKRKRGRPPLDD
AYDVFNVRKLAQYAANLEPAQRAYLETARHFTEEPPLAAHAASMASPPAA
CPPKQRQRLRHQQQQQQQLLQSESSDQEQPAAGQDWSNLEPNGSATPKLL
SDGDANKQETEGGDESLPAVLTTASSSGTKKLEKIGERRERHGKLRHARR
LYEKSGEDEVDPPKEEPDELPQPVEEIENEHLVANRAESPRPTVVIPASF
ACKYEGGVTAAGGGSGSGTGSGSLGSSYLINEHGMLMAHEFAPNVASAAA
TAAVAVAAAAAAVANASAGNGNGGQDVSGSGTGAAADYPDIKLEDYDAAE
LRLTNEELSQWQDVIKMDDYLAKGRRPQFWEEPFTKRVLDAIKNKRLEMK
KAARILGVSYGTLYGRYREVYGCLKHPYSGTAFRNSGSTSTSQMGVQPRF
DLGFRNGGVLPAQLVQTNPYLQSWASASFLDH

BO01273.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3726-PA 676 CG3726-PA 1..676 1..676 3524 100 Plus
CG3726-PB 682 CG3726-PB 1..664 1..664 3458 100 Plus
bab2-PB 1066 CG9102-PB 196..406 4..217 342 39.7 Plus
bab2-PA 1067 CG9102-PA 196..406 4..217 342 39.7 Plus
lolal-PH 127 CG5738-PH 6..118 4..117 304 51.8 Plus