Clone Sequence Records
BO01275.3prime Sequence
909 bp (810 high quality bases) assembled on 2005-11-30
> BO01275.3prime
ATGGTCTAGAAAGCTTGCAGGTATCAAATTGAGCAGGTTGTCCAGAGCGG
CGGAGCTGGCAAAGAGATCAGTAGTTATGGCGTCATAGTCTACGCCCAGG
CTCTCCAGCTCGGTGAAACAGTCTTCCGTGAGGCCTGGAATCTCCAGTGA
GTTAATCGACTTGTTGAATGCATCATGCCGATTGGTGTAGCCCTTCTTCT
CGCGGAACATCTCAGCCAACTGCTCGTCGCTCAGTTCGATGCCATGCACC
TTCTTGGAATGTTGGCGGAATTTGCTGCGATCAGCGAACTCGCTGGTGCA
CTTCTGGCACTTGTACGGGTAATCCATGTGCTCGTACTGATGCTGACGCC
TGCGCCATCTGGTCTTCGTCTCAAAGTTGCACACCTCACAGCGCCAGACC
TTCGACTTCTGGTGACTTCTTTGCTCGTGCTCGCGCAGCAGGGTCATGTT
TTGGAACTGATTGCCACAGGTAAGGCAGCTAACTGGTTCCTCATTGACAT
GAGCCCGTTCGTAGTGCACTCGCAACTCCGCCGAGTTAACATAGTTAAGC
GAGCACTTACCGCACTGGTAGTGCCGCTCCGAGTGCCGCTTGCGATGCAT
CGTTAGGGTTTCGGCGCTTTTGAAGCTACGCCGGCAGATCTCGCACTCGT
GTACTGTTTCCACGGCATGGAGTTGCTGCAAGTGTAGCTCGTACTTGCGC
ATGCTGTTGAACTGTTGATCGCAGAAGCTGCAATGCACGACATCCTTCAC
CTGACAGAAACGCTGATGGCTGTGCAGGCTGGCCTTCTGGTTGAACACCT
TATCGCATGCCGTGCAGGCATATGATTTCTGTGGTGACACCCGCATTTGC
ACCCGAGTGTGCACCCGGGTGTAATGTTTTCTAGCCGAGCGCTGATCCTT
GAAAGATCT
BO01275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12942-PA | 2061 | CG12942-RA | 1250..2058 | 827..19 | 4045 | 100 | Minus |
CG12942-PA | 2061 | CG12942-RA | 1174..1232 | 903..845 | 270 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12942-RA | 2481 | CG12942-RA | 1318..2202 | 903..19 | 4320 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10896005..10896636 | 903..272 | 3040 | 98.7 | Minus |
2R | 25286936 | 2R | 10896691..10896943 | 271..19 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:58:20 has no hits.
BO01275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:15 Download gff for
BO01275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-PA | 1168..2061 | 15..909 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:27 Download gff for
BO01275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-PA | 1168..2061 | 15..909 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:41 Download gff for
BO01275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 1312..2205 | 15..909 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:10 Download gff for
BO01275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 1312..2205 | 15..909 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:10 Download gff for
BO01275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10895999..10896636 | 272..909 | 98 | -> | Minus |
2R | 10896691..10896946 | 15..271 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:41 Download gff for
BO01275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6783504..6784141 | 272..909 | 98 | -> | Minus |
arm_2R | 6784196..6784451 | 15..271 | 99 | | Minus |
BO01275.5prime Sequence
911 bp (680 high quality bases) assembled on 2005-11-30
> BO01275.5prime
GAAGTTATCAGTCGACATGGACGCCGCCGTACCGGATCCCGCGCTCCTGG
CGATGAACAAGCTGAACAAGGGCTCCAAGTGCCGAGCCTGTCTATCGGTG
GACAGGAAAACCGTGCAGTTGAACGCCGAGGTGCCCAACCTGCAAAAGAC
GCGTACCTACGCCCAGAGCCTGAAGCAGTGCACCAACCTGGACCTGCGGG
TCATTAGTCCAGGTGGCTACCTGTGGCCGATGCAAATCTGCGTGCGCTGC
TGTCGCGCCCTGGAGGTGGCTATGCACTTTGTCGAAATGGCCCTGGAATC
GAATCTCAAGCTCCAAGCCGAAGCCAAAAGCGTAAAGCTGCCCAGTCCCA
CTGGAGAGCTTAAACGAAAGGCCAGCAACGAAACGATACCATGGAATCAG
TTTAGCCAGGAGTTCGAGCAGTTTGTCGAGGGCTATGAGGGTCCCATCGA
GGAGAATGTCCTCTATATGCGAGGAACCAAGGTGCCGCGGCTGGATGTCG
ACGCTTCTTCGAGCAGCGAGACAGCGCCAAAGGAAGATGAAGTAATACTC
TTCGACGTCAAGTATGACACCAATGATCTGGAGGAGGAGGACGAGAACGA
CGGCTCGGATGCCAAGAACAATGAGACCTTCTTCGAGAACAGTATTACAC
CTGGAGAGTCAGTTATGGTCGTCTCAGTCGCGGAAAAAGCTGTCGAGAAT
AATAACAATTATAATTTCAATAACAAAAACGGCGATGTGACGGACGAGGA
GTGCGACCTTATACAACGCGCTCTGGAGATGACTCTAAACGACGATGGCT
GTAGCCAAAGTCCCAAGAACGAGGCCAGCAATGAAACTCAGCTGAAATCC
AATGGAATAGAGGTCTCATCGCCACTCTTTATTAAGCTGGCCACGACTAG
CAGCACGACGG
BO01275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12942-PA | 2061 | CG12942-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12942-RA | 2481 | CG12942-RA | 144..1039 | 16..911 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10894602..10895128 | 16..542 | 2635 | 100 | Plus |
2R | 25286936 | 2R | 10895190..10895498 | 540..848 | 1545 | 100 | Plus |
2R | 25286936 | 2R | 10895552..10895614 | 849..911 | 315 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 12..47 | 694..729 | 117 | 80.6 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7050..7085 | 694..729 | 117 | 80.6 | Plus |
BO01275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:15 Download gff for
BO01275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:29 Download gff for
BO01275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:30 Download gff for
BO01275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 138..1039 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:54 Download gff for
BO01275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 138..1039 | 9..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:54 Download gff for
BO01275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10894596..10895128 | 9..542 | 99 | -> | Plus |
2R | 10895193..10895498 | 543..848 | 100 | -> | Plus |
2R | 10895552..10895614 | 849..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:30 Download gff for
BO01275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6782101..6782633 | 9..542 | 99 | -> | Plus |
arm_2R | 6782698..6783003 | 543..848 | 100 | -> | Plus |
arm_2R | 6783057..6783119 | 849..911 | 100 | | Plus |
BO01275.complete Sequence
2092 bp (2092 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629463
> BO01275.complete
GAAGTTATCAGTCGACATGGACGCCGCCGTACCGGATCCCGCGCTCCTGG
CGATGAACAAGCTGAACAAGGGCTCCAAGTGCCGAGCCTGTCTATCGGTG
GACAGGAAAACCGTGCAGTTGAACGCCGAGGTGCCCAACCTGCAAAAGAC
GCGTACCTACGCCCAGAGCCTGAAGCAGTGCACCAACCTGGACCTGCGGG
TCATTAGTCCAGGTGGCTACCTGTGGCCGATGCAAATCTGCGTGCGCTGC
TGTCGCGCCCTGGAGGTGGCTATGCACTTTGTCGAAATGGCCCTGGAATC
GAATCTCAAGCTCCAAGCCGAAGCCAAAAGCGTAAAGCTGCCCAGTCCCA
CTGGAGAGCTTAAACGAAAGGCCAGCAACGAAACGATACCATGGAATCAG
TTTAGCCAGGAGTTCGAGCAGTTTGTCGAGGGCTATGAGGGTCCCATCGA
GGAGAATGTCCTCTATATGCGAGGAACCAAGGTGCCGCGGCTGGATGTCG
ACGCTTCTTCGAGCAGCGAGACAGCGCCAAAGGAAGATGAAGTAATACTC
TTCGACGTCAAGTATGACACCAATGATCTGGAGGAGGAGGACGAGAACGA
CGGCTCGGATGCCAAGAACAATGAGACCTTCTTCGAGAACAGTATTACAC
CTGGAGAGTCAGTTATGGTCGTCTCAGTCGCGGAAAAAGCTGTCGAGAAT
AATAACAATTATAATTTCAATAACAAAAACGGCGATGTGACGGACGAGGA
GTGCGACCTTATACAACGCGCTCTGGAGATGACTCTAAACGACGATGGCT
GTAGCCAAAGTCCCAAGAACGAGGCCAGCAATGAAACTCAGCTGAAATCC
AATGGAATAGAGGTCTCATCGCCACTCTTTATTAAGCTGGCCACGACTAG
CAGCACGACGGGTAATATACCCATTCTGAAATGCAACATTTGCCAATACA
CGCATACCGATGCGGAGCAGTTAAAAATTCACTACAAAAGTATTCACAAG
ATTTCTATGATGGAAGACGATATAATTGGCCTAAACAAAAATCAAAACTT
CAAGTGCCGACCTTGCAATAGTTATGAGACGAAAGACAGGTCTGAAATGC
AGAAGCATCTCATCGATCACCACAAAATAGATGGTGATTTTGAAATGTAC
TGTTATATGCAAGCAAACTGCCCGGCTTGCGACAGGATCTTCAAGGATCA
GCGCTCGGCTAGAAAACATTACACCCGGGTGCACACTCCGGTGCAAATTG
CGGTGTCACCAACAGAATCATATGCCTGCACGGCATGCGATAAGGTGTTC
AACCAGAAGGCCAGCCTGCACAGCCATCAGCGTTTCTGTCAGGTGAAGGA
TGTCGTGCATTGCAGCTTCTGCGATCAACAGTTCAACAGCATGCGCAAGT
ACGAGCTACACTTGCAGCAACTCCATGCCGTGGAAACAGTACACGAGTGC
GAGATCTGCCGGCGTAGCTTCAAAAGCGCCGAAACCCTAACGATGCATCG
CAAGCGGCACTCGGAGCGGCACTACCAGTGCGGTAAGTGCTCGCTTAACT
ATGTTAACTCGGCGGAGTTGCGAGTGCACTACGAACGGGCTCATGTCAAT
GAGGAACCAGTTAGCTGCCTTACCTGTGGCAATCAGTTCCAAAACATGAC
CCTGCTGCGCGAGCACGAGCAAAGAAGTCACCAGAAGTCGAAGGTCTGGC
GCTGTGAGGTGTGCAACTTTGAGACGAAGACCAGATGGCGCAGGCGTCAG
CATCAGTACGAGCACATGGATTACCCGTACAAGTGCCAGAAGTGCACCAG
CGAGTTCGCTGATCGCAGCAAATTCCGCCAACATTCCAAGAAGGTGCATG
GCATCGAACTGAGCGACGAGCAGTTGGCTGAGATGTTCCGCGAGAAGAAG
GGCTACACCAATCGGCATGATGCATTCAACAAGTCGATTAACTCACTGGA
GATTCCAGGCCTCACGGAAGACTGTTTCACCGAGCTGGAGAGCCTGGGCG
TAGACTATGACGCCATAACTACTGATCTCTTTGCCAGCTCCGCCGCTCTG
GACAACCTGCTCAATTTGATACCTGCAAGCTTTCTAGACCAT
BO01275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12942-RA | 2061 | CG12942-PA | 1..2058 | 17..2074 | 10290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12942-RA | 2481 | CG12942-RA | 144..2202 | 16..2074 | 10295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10895957..10896636 | 1142..1821 | 3400 | 100 | Plus |
2R | 25286936 | 2R | 10894602..10895128 | 16..542 | 2635 | 100 | Plus |
2R | 25286936 | 2R | 10895190..10895498 | 540..848 | 1545 | 100 | Plus |
2R | 25286936 | 2R | 10896691..10896943 | 1822..2074 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 10895552..10895743 | 849..1040 | 960 | 100 | Plus |
2R | 25286936 | 2R | 10895801..10895902 | 1041..1142 | 510 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 12..47 | 694..729 | 117 | 80.6 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7050..7085 | 694..729 | 117 | 80.6 | Plus |
BO01275.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:07 Download gff for
BO01275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 1..2061 | 17..2078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:28 Download gff for
BO01275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 86..2153 | 9..2078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:02 Download gff for
BO01275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 145..2202 | 17..2076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:07 Download gff for
BO01275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 86..2153 | 9..2078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:53 Download gff for
BO01275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12942-RA | 145..2202 | 17..2076 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:53 Download gff for
BO01275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10895552..10895743 | 849..1040 | 100 | -> | Plus |
2R | 10895801..10895902 | 1041..1142 | 100 | -> | Plus |
2R | 10894603..10895128 | 17..542 | 100 | -> | Plus |
2R | 10895193..10895498 | 543..848 | 100 | -> | Plus |
2R | 10895958..10896636 | 1143..1821 | 100 | -> | Plus |
2R | 10896691..10896943 | 1822..2076 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:02 Download gff for
BO01275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6783057..6783248 | 849..1040 | 100 | -> | Plus |
arm_2R | 6783306..6783407 | 1041..1142 | 100 | -> | Plus |
arm_2R | 6782108..6782633 | 17..542 | 100 | -> | Plus |
arm_2R | 6782698..6783003 | 543..848 | 100 | -> | Plus |
arm_2R | 6783463..6784141 | 1143..1821 | 100 | -> | Plus |
arm_2R | 6784196..6784448 | 1822..2076 | 99 | | Plus |
BO01275.pep Sequence
Translation from 16 to 2092
> BO01275.pep
MDAAVPDPALLAMNKLNKGSKCRACLSVDRKTVQLNAEVPNLQKTRTYAQ
SLKQCTNLDLRVISPGGYLWPMQICVRCCRALEVAMHFVEMALESNLKLQ
AEAKSVKLPSPTGELKRKASNETIPWNQFSQEFEQFVEGYEGPIEENVLY
MRGTKVPRLDVDASSSSETAPKEDEVILFDVKYDTNDLEEEDENDGSDAK
NNETFFENSITPGESVMVVSVAEKAVENNNNYNFNNKNGDVTDEECDLIQ
RALEMTLNDDGCSQSPKNEASNETQLKSNGIEVSSPLFIKLATTSSTTGN
IPILKCNICQYTHTDAEQLKIHYKSIHKISMMEDDIIGLNKNQNFKCRPC
NSYETKDRSEMQKHLIDHHKIDGDFEMYCYMQANCPACDRIFKDQRSARK
HYTRVHTPVQIAVSPTESYACTACDKVFNQKASLHSHQRFCQVKDVVHCS
FCDQQFNSMRKYELHLQQLHAVETVHECEICRRSFKSAETLTMHRKRHSE
RHYQCGKCSLNYVNSAELRVHYERAHVNEEPVSCLTCGNQFQNMTLLREH
EQRSHQKSKVWRCEVCNFETKTRWRRRQHQYEHMDYPYKCQKCTSEFADR
SKFRQHSKKVHGIELSDEQLAEMFREKKGYTNRHDAFNKSINSLEIPGLT
EDCFTELESLGVDYDAITTDLFASSAALDNLLNLIPASFLDH
BO01275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12942-PA | 686 | CG12942-PA | 1..686 | 1..686 | 3670 | 100 | Plus |
CG5245-PA | 501 | CG5245-PA | 79..273 | 416..614 | 291 | 31 | Plus |
CTCF-PA | 818 | CG8591-PA | 208..576 | 223..614 | 280 | 22.9 | Plus |
CG5245-PA | 501 | CG5245-PA | 138..434 | 305..606 | 272 | 25.7 | Plus |
CG5245-PA | 501 | CG5245-PA | 83..354 | 305..611 | 268 | 26 | Plus |
CG11247-PC | 522 | CG11247-PC | 122..398 | 305..606 | 267 | 24.8 | Plus |
CG11247-PA | 522 | CG11247-PA | 122..398 | 305..606 | 267 | 24.8 | Plus |
CG11247-PC | 522 | CG11247-PC | 89..355 | 341..622 | 240 | 24.6 | Plus |
CG5245-PA | 501 | CG5245-PA | 249..493 | 305..609 | 238 | 24.5 | Plus |
CG5245-PA | 501 | CG5245-PA | 78..370 | 341..658 | 223 | 24.7 | Plus |