Clone BO01275 Report

Search the DGRC for BO01275

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG12942-RA
Protein status:BO01275.pep: validated full length
Sequenced Size:2092

Clone Sequence Records

BO01275.3prime Sequence

909 bp (810 high quality bases) assembled on 2005-11-30

> BO01275.3prime
ATGGTCTAGAAAGCTTGCAGGTATCAAATTGAGCAGGTTGTCCAGAGCGG
CGGAGCTGGCAAAGAGATCAGTAGTTATGGCGTCATAGTCTACGCCCAGG
CTCTCCAGCTCGGTGAAACAGTCTTCCGTGAGGCCTGGAATCTCCAGTGA
GTTAATCGACTTGTTGAATGCATCATGCCGATTGGTGTAGCCCTTCTTCT
CGCGGAACATCTCAGCCAACTGCTCGTCGCTCAGTTCGATGCCATGCACC
TTCTTGGAATGTTGGCGGAATTTGCTGCGATCAGCGAACTCGCTGGTGCA
CTTCTGGCACTTGTACGGGTAATCCATGTGCTCGTACTGATGCTGACGCC
TGCGCCATCTGGTCTTCGTCTCAAAGTTGCACACCTCACAGCGCCAGACC
TTCGACTTCTGGTGACTTCTTTGCTCGTGCTCGCGCAGCAGGGTCATGTT
TTGGAACTGATTGCCACAGGTAAGGCAGCTAACTGGTTCCTCATTGACAT
GAGCCCGTTCGTAGTGCACTCGCAACTCCGCCGAGTTAACATAGTTAAGC
GAGCACTTACCGCACTGGTAGTGCCGCTCCGAGTGCCGCTTGCGATGCAT
CGTTAGGGTTTCGGCGCTTTTGAAGCTACGCCGGCAGATCTCGCACTCGT
GTACTGTTTCCACGGCATGGAGTTGCTGCAAGTGTAGCTCGTACTTGCGC
ATGCTGTTGAACTGTTGATCGCAGAAGCTGCAATGCACGACATCCTTCAC
CTGACAGAAACGCTGATGGCTGTGCAGGCTGGCCTTCTGGTTGAACACCT
TATCGCATGCCGTGCAGGCATATGATTTCTGTGGTGACACCCGCATTTGC
ACCCGAGTGTGCACCCGGGTGTAATGTTTTCTAGCCGAGCGCTGATCCTT
GAAAGATCT

BO01275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12942-PA 2061 CG12942-RA 1250..2058 827..19 4045 100 Minus
CG12942-PA 2061 CG12942-RA 1174..1232 903..845 270 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12942-RA 2481 CG12942-RA 1318..2202 903..19 4320 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10896005..10896636 903..272 3040 98.7 Minus
2R 25286936 2R 10896691..10896943 271..19 1265 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:58:20 has no hits.

BO01275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:15 Download gff for BO01275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12942-PA 1168..2061 15..909 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:27 Download gff for BO01275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12942-PA 1168..2061 15..909 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:41 Download gff for BO01275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 1312..2205 15..909 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:10 Download gff for BO01275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 1312..2205 15..909 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:10 Download gff for BO01275.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10895999..10896636 272..909 98 -> Minus
2R 10896691..10896946 15..271 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:41 Download gff for BO01275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6783504..6784141 272..909 98 -> Minus
arm_2R 6784196..6784451 15..271 99   Minus

BO01275.5prime Sequence

911 bp (680 high quality bases) assembled on 2005-11-30

> BO01275.5prime
GAAGTTATCAGTCGACATGGACGCCGCCGTACCGGATCCCGCGCTCCTGG
CGATGAACAAGCTGAACAAGGGCTCCAAGTGCCGAGCCTGTCTATCGGTG
GACAGGAAAACCGTGCAGTTGAACGCCGAGGTGCCCAACCTGCAAAAGAC
GCGTACCTACGCCCAGAGCCTGAAGCAGTGCACCAACCTGGACCTGCGGG
TCATTAGTCCAGGTGGCTACCTGTGGCCGATGCAAATCTGCGTGCGCTGC
TGTCGCGCCCTGGAGGTGGCTATGCACTTTGTCGAAATGGCCCTGGAATC
GAATCTCAAGCTCCAAGCCGAAGCCAAAAGCGTAAAGCTGCCCAGTCCCA
CTGGAGAGCTTAAACGAAAGGCCAGCAACGAAACGATACCATGGAATCAG
TTTAGCCAGGAGTTCGAGCAGTTTGTCGAGGGCTATGAGGGTCCCATCGA
GGAGAATGTCCTCTATATGCGAGGAACCAAGGTGCCGCGGCTGGATGTCG
ACGCTTCTTCGAGCAGCGAGACAGCGCCAAAGGAAGATGAAGTAATACTC
TTCGACGTCAAGTATGACACCAATGATCTGGAGGAGGAGGACGAGAACGA
CGGCTCGGATGCCAAGAACAATGAGACCTTCTTCGAGAACAGTATTACAC
CTGGAGAGTCAGTTATGGTCGTCTCAGTCGCGGAAAAAGCTGTCGAGAAT
AATAACAATTATAATTTCAATAACAAAAACGGCGATGTGACGGACGAGGA
GTGCGACCTTATACAACGCGCTCTGGAGATGACTCTAAACGACGATGGCT
GTAGCCAAAGTCCCAAGAACGAGGCCAGCAATGAAACTCAGCTGAAATCC
AATGGAATAGAGGTCTCATCGCCACTCTTTATTAAGCTGGCCACGACTAG
CAGCACGACGG

BO01275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12942-PA 2061 CG12942-RA 1..895 17..911 4475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12942-RA 2481 CG12942-RA 144..1039 16..911 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10894602..10895128 16..542 2635 100 Plus
2R 25286936 2R 10895190..10895498 540..848 1545 100 Plus
2R 25286936 2R 10895552..10895614 849..911 315 100 Plus
Blast to na_te.dros performed 2015-02-12 00:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 12..47 694..729 117 80.6 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7050..7085 694..729 117 80.6 Plus

BO01275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:15 Download gff for BO01275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12942-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:29 Download gff for BO01275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12942-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:30 Download gff for BO01275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 138..1039 9..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:54 Download gff for BO01275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 138..1039 9..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:54 Download gff for BO01275.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10894596..10895128 9..542 99 -> Plus
2R 10895193..10895498 543..848 100 -> Plus
2R 10895552..10895614 849..911 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:30 Download gff for BO01275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6782101..6782633 9..542 99 -> Plus
arm_2R 6782698..6783003 543..848 100 -> Plus
arm_2R 6783057..6783119 849..911 100   Plus

BO01275.complete Sequence

2092 bp (2092 high quality bases) assembled on 2006-04-26

GenBank Submission: FJ629463

> BO01275.complete
GAAGTTATCAGTCGACATGGACGCCGCCGTACCGGATCCCGCGCTCCTGG
CGATGAACAAGCTGAACAAGGGCTCCAAGTGCCGAGCCTGTCTATCGGTG
GACAGGAAAACCGTGCAGTTGAACGCCGAGGTGCCCAACCTGCAAAAGAC
GCGTACCTACGCCCAGAGCCTGAAGCAGTGCACCAACCTGGACCTGCGGG
TCATTAGTCCAGGTGGCTACCTGTGGCCGATGCAAATCTGCGTGCGCTGC
TGTCGCGCCCTGGAGGTGGCTATGCACTTTGTCGAAATGGCCCTGGAATC
GAATCTCAAGCTCCAAGCCGAAGCCAAAAGCGTAAAGCTGCCCAGTCCCA
CTGGAGAGCTTAAACGAAAGGCCAGCAACGAAACGATACCATGGAATCAG
TTTAGCCAGGAGTTCGAGCAGTTTGTCGAGGGCTATGAGGGTCCCATCGA
GGAGAATGTCCTCTATATGCGAGGAACCAAGGTGCCGCGGCTGGATGTCG
ACGCTTCTTCGAGCAGCGAGACAGCGCCAAAGGAAGATGAAGTAATACTC
TTCGACGTCAAGTATGACACCAATGATCTGGAGGAGGAGGACGAGAACGA
CGGCTCGGATGCCAAGAACAATGAGACCTTCTTCGAGAACAGTATTACAC
CTGGAGAGTCAGTTATGGTCGTCTCAGTCGCGGAAAAAGCTGTCGAGAAT
AATAACAATTATAATTTCAATAACAAAAACGGCGATGTGACGGACGAGGA
GTGCGACCTTATACAACGCGCTCTGGAGATGACTCTAAACGACGATGGCT
GTAGCCAAAGTCCCAAGAACGAGGCCAGCAATGAAACTCAGCTGAAATCC
AATGGAATAGAGGTCTCATCGCCACTCTTTATTAAGCTGGCCACGACTAG
CAGCACGACGGGTAATATACCCATTCTGAAATGCAACATTTGCCAATACA
CGCATACCGATGCGGAGCAGTTAAAAATTCACTACAAAAGTATTCACAAG
ATTTCTATGATGGAAGACGATATAATTGGCCTAAACAAAAATCAAAACTT
CAAGTGCCGACCTTGCAATAGTTATGAGACGAAAGACAGGTCTGAAATGC
AGAAGCATCTCATCGATCACCACAAAATAGATGGTGATTTTGAAATGTAC
TGTTATATGCAAGCAAACTGCCCGGCTTGCGACAGGATCTTCAAGGATCA
GCGCTCGGCTAGAAAACATTACACCCGGGTGCACACTCCGGTGCAAATTG
CGGTGTCACCAACAGAATCATATGCCTGCACGGCATGCGATAAGGTGTTC
AACCAGAAGGCCAGCCTGCACAGCCATCAGCGTTTCTGTCAGGTGAAGGA
TGTCGTGCATTGCAGCTTCTGCGATCAACAGTTCAACAGCATGCGCAAGT
ACGAGCTACACTTGCAGCAACTCCATGCCGTGGAAACAGTACACGAGTGC
GAGATCTGCCGGCGTAGCTTCAAAAGCGCCGAAACCCTAACGATGCATCG
CAAGCGGCACTCGGAGCGGCACTACCAGTGCGGTAAGTGCTCGCTTAACT
ATGTTAACTCGGCGGAGTTGCGAGTGCACTACGAACGGGCTCATGTCAAT
GAGGAACCAGTTAGCTGCCTTACCTGTGGCAATCAGTTCCAAAACATGAC
CCTGCTGCGCGAGCACGAGCAAAGAAGTCACCAGAAGTCGAAGGTCTGGC
GCTGTGAGGTGTGCAACTTTGAGACGAAGACCAGATGGCGCAGGCGTCAG
CATCAGTACGAGCACATGGATTACCCGTACAAGTGCCAGAAGTGCACCAG
CGAGTTCGCTGATCGCAGCAAATTCCGCCAACATTCCAAGAAGGTGCATG
GCATCGAACTGAGCGACGAGCAGTTGGCTGAGATGTTCCGCGAGAAGAAG
GGCTACACCAATCGGCATGATGCATTCAACAAGTCGATTAACTCACTGGA
GATTCCAGGCCTCACGGAAGACTGTTTCACCGAGCTGGAGAGCCTGGGCG
TAGACTATGACGCCATAACTACTGATCTCTTTGCCAGCTCCGCCGCTCTG
GACAACCTGCTCAATTTGATACCTGCAAGCTTTCTAGACCAT

BO01275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12942-RA 2061 CG12942-PA 1..2058 17..2074 10290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12942-RA 2481 CG12942-RA 144..2202 16..2074 10295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10895957..10896636 1142..1821 3400 100 Plus
2R 25286936 2R 10894602..10895128 16..542 2635 100 Plus
2R 25286936 2R 10895190..10895498 540..848 1545 100 Plus
2R 25286936 2R 10896691..10896943 1822..2074 1265 100 Plus
2R 25286936 2R 10895552..10895743 849..1040 960 100 Plus
2R 25286936 2R 10895801..10895902 1041..1142 510 100 Plus
Blast to na_te.dros performed 2014-11-26 22:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 12..47 694..729 117 80.6 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7050..7085 694..729 117 80.6 Plus

BO01275.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:07 Download gff for BO01275.complete
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 1..2061 17..2078 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:28 Download gff for BO01275.complete
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 86..2153 9..2078 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:02 Download gff for BO01275.complete
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 145..2202 17..2076 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:07 Download gff for BO01275.complete
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 86..2153 9..2078 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:53 Download gff for BO01275.complete
Subject Subject Range Query Range Percent Splice Strand
CG12942-RA 145..2202 17..2076 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:53 Download gff for BO01275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10895552..10895743 849..1040 100 -> Plus
2R 10895801..10895902 1041..1142 100 -> Plus
2R 10894603..10895128 17..542 100 -> Plus
2R 10895193..10895498 543..848 100 -> Plus
2R 10895958..10896636 1143..1821 100 -> Plus
2R 10896691..10896943 1822..2076 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:02 Download gff for BO01275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6783057..6783248 849..1040 100 -> Plus
arm_2R 6783306..6783407 1041..1142 100 -> Plus
arm_2R 6782108..6782633 17..542 100 -> Plus
arm_2R 6782698..6783003 543..848 100 -> Plus
arm_2R 6783463..6784141 1143..1821 100 -> Plus
arm_2R 6784196..6784448 1822..2076 99   Plus

BO01275.pep Sequence

Translation from 16 to 2092

> BO01275.pep
MDAAVPDPALLAMNKLNKGSKCRACLSVDRKTVQLNAEVPNLQKTRTYAQ
SLKQCTNLDLRVISPGGYLWPMQICVRCCRALEVAMHFVEMALESNLKLQ
AEAKSVKLPSPTGELKRKASNETIPWNQFSQEFEQFVEGYEGPIEENVLY
MRGTKVPRLDVDASSSSETAPKEDEVILFDVKYDTNDLEEEDENDGSDAK
NNETFFENSITPGESVMVVSVAEKAVENNNNYNFNNKNGDVTDEECDLIQ
RALEMTLNDDGCSQSPKNEASNETQLKSNGIEVSSPLFIKLATTSSTTGN
IPILKCNICQYTHTDAEQLKIHYKSIHKISMMEDDIIGLNKNQNFKCRPC
NSYETKDRSEMQKHLIDHHKIDGDFEMYCYMQANCPACDRIFKDQRSARK
HYTRVHTPVQIAVSPTESYACTACDKVFNQKASLHSHQRFCQVKDVVHCS
FCDQQFNSMRKYELHLQQLHAVETVHECEICRRSFKSAETLTMHRKRHSE
RHYQCGKCSLNYVNSAELRVHYERAHVNEEPVSCLTCGNQFQNMTLLREH
EQRSHQKSKVWRCEVCNFETKTRWRRRQHQYEHMDYPYKCQKCTSEFADR
SKFRQHSKKVHGIELSDEQLAEMFREKKGYTNRHDAFNKSINSLEIPGLT
EDCFTELESLGVDYDAITTDLFASSAALDNLLNLIPASFLDH

BO01275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12942-PA 686 CG12942-PA 1..686 1..686 3670 100 Plus
CG5245-PA 501 CG5245-PA 79..273 416..614 291 31 Plus
CTCF-PA 818 CG8591-PA 208..576 223..614 280 22.9 Plus
CG5245-PA 501 CG5245-PA 138..434 305..606 272 25.7 Plus
CG5245-PA 501 CG5245-PA 83..354 305..611 268 26 Plus
CG11247-PC 522 CG11247-PC 122..398 305..606 267 24.8 Plus
CG11247-PA 522 CG11247-PA 122..398 305..606 267 24.8 Plus
CG11247-PC 522 CG11247-PC 89..355 341..622 240 24.6 Plus
CG5245-PA 501 CG5245-PA 249..493 305..609 238 24.5 Plus
CG5245-PA 501 CG5245-PA 78..370 341..658 223 24.7 Plus