Clone Sequence Records
BO01277.3prime Sequence
854 bp (739 high quality bases) assembled on 2005-11-30
> BO01277.3prime
ATGGTCTAGAAAGCTTGCACTCTTGAATAGACCCACGCACATCAGGAGAT
TTCGGCGCGTAAAGTGCAGGCTGACAAATGGCGAGTTCTTGCTGGGGAAA
GTACGCATGAGGTAGACGTCCTCGTCGTTCTCATCCTGATGGTGCGACAC
AGTGATGTGATTGCTGATATAGTCTTCGGTAACCTTGTGAAAGTCCCACA
GAGTTAGATTGTTATCCAAGCCGGCTGCAGCCAGGACTGTTCCATCGCGA
CTAAAGGTGATCGTGGTCACAGTGCTAGTGTGCCTCAACAGGGTGGTGAC
CAGGGATCCGTTCGACAGATCCCAGATGATGATATTGTGATCTACTGAAC
CCGAGGCCAGATACCGGCCGCAGGCGGAGAAGGCCAGAGAACTCACCGAT
CCCTTGTGGCCCGTCATCAGGCGTACCGACTGACCGGTCATGTTGTCCCA
CAGGCGTACCGTGCGATCGCTAGAACCGGTGGCCACATAATTGGAATTGG
GATGAAATTGTACACAATCCACGTCCGACAAGTGACCCACGAATACGCGC
AACGCTTGATTGGAATCCGTGGCCCACAGACGAGCAGTTTTGTCGTACGA
ACAAGAAACAAAATAGTAGCCATGCGGCGCANAGCGAACATCCCACACCG
GGTAAACGTGCCCGCGGTAGGTGACTACGCAGGACCAGGTGAGCAGAGAC
CACAGCCTTATGGTGCTGTCCTCGGAACATGAGAGCAACAGGGTCATCTC
GGGGGCAAAGGCACAGCGGTATACGGGTCCGGTGTGACCCATTNAGCTCC
CTGGTACCTCACCACTTCGGTCATCCAGCATACGCACATTGATATCCGCC
GATT
BO01277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7704-PA | 2115 | Taf5-RA | 1331..2112 | 800..19 | 3847 | 99.6 | Minus |
| CG7704-PA | 2115 | Taf5-RA | 1277..1326 | 854..805 | 250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-RA | 2362 | CG7704-RA | 1345..2180 | 854..19 | 4098 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10877494..10878329 | 19..854 | 4098 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:13:36 has no hits.
BO01277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:18 Download gff for
BO01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-PA | 1277..2115 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:33 Download gff for
BO01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7704-PA | 1277..2115 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:34:05 Download gff for
BO01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 1345..2180 | 19..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:29:16 Download gff for
BO01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 1345..2180 | 19..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:29:16 Download gff for
BO01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10877494..10878329 | 19..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:34:05 Download gff for
BO01277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6764999..6765834 | 19..854 | 99 | | Plus |
BO01277.5prime Sequence
804 bp (721 high quality bases) assembled on 2005-11-30
> BO01277.5prime
GAAGTTATCAGTCGACATGAGCCTGGAAGTGAGCAATATAAACGGGGGAA
ACGGTACTCAATTGTCCCACGACAAGCGTGAGCTGCTGTGCCTGCTGAAA
CTCATCAAAAAGTACCAGCTGAAGAGCACTGAGGAGCTGCTCTGCCAAGA
GGCGAATGTGAGCAGTGTGGAATTGTCGGAAATCAGCGAAAGTGATGTTC
AGCAGGTGCTGGGCGCAGTTTTGGGAGCTGGCGATGCCAACCGGGAGCGG
AAACATGTCCAATCTCCGGCGCAGGGTCATAAACAGTCCGCGGTGACGGA
GGCCAATGCTGCAGAGGAACTGGCCAAGTTCATCGACGACGACAGCTTTG
ATGCTCAGCACTATGAGCAGGCATACAAGGAGCTGCGCACTTTCGTTGAG
GACTCCCTGGACATATACAAGCATGAGCTGTCCATGGTTCTGTACCCAAT
TCTGGTGCAGATCTACTTCAAGATCCTCGCCAGTGGACTAAGGGAGAAGG
CCAAAGAATTCATTGAGAAGTACAAATGCGATCTCGACGGCTACTACATA
GAGGGTCTTTTCAACCTTCTTTTGCTGTCTAAGCCCGAGGAGCTGCTGGA
GAATGACCTCGTAGTAGCCATGGAGCAGGATAAGTTTGTCATTCGCATGT
CCAGGGACTCGCACTCTCTGTTCAAGCGACACATTCAGGATCGCCGGCAG
GAAGTGGTGGCAGATATTGTTTCCAAGTACTTGCATTTCGACACATACGA
GGGCATGGCGCGCAACAAGCTGCAGTGCGTCGCCACCGCGGGCTCGCACC
TCGG
BO01277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7704-PA | 2115 | Taf5-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-RA | 2362 | CG7704-RA | 69..856 | 17..804 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10878818..10879605 | 804..17 | 3940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:47:05 has no hits.
BO01277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:19 Download gff for
BO01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-PA | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:35 Download gff for
BO01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7704-PA | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:13 Download gff for
BO01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 60..856 | 8..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:43 Download gff for
BO01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 60..856 | 8..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:43 Download gff for
BO01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10878818..10879614 | 8..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:13 Download gff for
BO01277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6766323..6767119 | 8..804 | 99 | | Minus |
BO01277.complete Sequence
2146 bp (2146 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629464
> BO01277.complete
GAAGTTATCAGTCGACATGAGCCTGGAAGTGAGCAATATAAACGGGGGAA
ACGGTACTCAATTGTCCCACGACAAGCGTGAGCTGCTGTGCCTGCTGAAA
CTCATCAAAAAGTACCAGCTGAAGAGCACTGAGGAGCTGCTCTGCCAAGA
GGCGAATGTGAGCAGTGTGGAATTGTCGGAAATCAGCGAAAGTGATGTTC
AGCAGGTGCTGGGCGCAGTTTTGGGAGCTGGCGATGCCAACCGGGAGCGG
AAACATGTCCAATCTCCGGCGCAGGGTCATAAACAGTCCGCGGTGACGGA
GGCCAATGCTGCAGAGGAACTGGCCAAGTTCATCGACGACGACAGCTTTG
ATGCTCAGCACTATGAGCAGGCATACAAGGAGCTGCGCACTTTCGTTGAG
GACTCCCTGGACATATACAAGCATGAGCTGTCCATGGTTCTGTACCCAAT
TCTGGTGCAGATCTACTTCAAGATCCTCGCCAGTGGACTAAGGGAGAAGG
CCAAAGAATTCATTGAGAAGTACAAATGCGATCTCGACGGCTACTACATA
GAGGGTCTTTTCAACCTTCTTTTGCTGTCTAAGCCCGAGGAGCTGCTGGA
GAATGACCTCGTAGTAGCCATGGAGCAGGATAAGTTTGTCATTCGCATGT
CCAGGGACTCGCACTCTCTGTTCAAGCGACACATTCAGGATCGCCGGCAG
GAAGTGGTGGCAGATATTGTTTCCAAGTACTTGCATTTCGACACATACGA
GGGCATGGCGCGCAACAAGCTGCAGTGCGTCGCCACCGCGGGCTCGCACC
TCGGAGAGGCCAAGCGACAGGACAACAAAATGCGGGTGTACTACGGACTG
CTCAAGGAGGTGGACTTTCAGACTCTGACCACTCCAGCGCCGGCACCAGA
GGAGGAGGACGATGATCCGGATGCCCCGGATCGTCCGAAAAAGAAAAAGC
CAAAAAAGGATCCCCTGCTGTCGAAAAAGTCCAAGTCGGATCCGAATGCT
CCATCCATCGACAGAATTCCCCTGCCGGAACTGAAGGATTCGGACAAGTT
GCTAAAGCTTAAGGCTCTCAGGGAAGCCAGCAAGCGTTTAGCCCTCAGCA
AGGATCAACTGCCCTCTGCCGTCTTCTACACGGTGCTTAATTCCCATCAG
GGCGTAACCTGTGCCGAGATTTCAGACGATTCCACGATGTTGGCCTGTGG
ATTTGGCGATTCTAGCGTGAGGATTTGGTCATTGACGCCCGCGAAGCTGC
GTACGCTGAAGGATGCAGATTCCCTTCGCGAACTGGACAAGGAATCGGCG
GATATCAATGTGCGTATGCTGGATGACCGAAGTGGTGAGGTAACCAGGAG
CTTAATGGGTCACACCGGACCCGTATACCGCTGTGCCTTTGCCCCCGAGA
TGAACCTGTTGCTCTCATGTTCCGAGGACAGCACCATAAGGCTGTGGTCT
CTGCTCACCTGGTCCTGCGTAGTCACCTACCGCGGGCACGTTTACCCGGT
GTGGGATGTTCGCTTTGCGCCGCATGGCTACTATTTTGTTTCTTGTTCGT
ACGACAAAACTGCTCGTCTGTGGGCCACGGATTCCAATCAAGCGTTGCGC
GTATTCGTGGGTCACTTGTCGGACGTGGATTGTGTACAATTTCATCCCAA
TTCCAATTATGTGGCCACCGGTTCTAGCGATCGCACGGTACGCCTGTGGG
ACAACATGACCGGTCAGTCGGTACGCCTGATGACGGGCCACAAGGGATCG
GTGAGTTCTCTGGCCTTCTCCGCCTGCGGCCGGTATCTGGCCTCGGGTTC
AGTAGATCACAATATCATCATCTGGGATCTGTCGAACGGATCCCTGGTCA
CCACCCTGTTGAGGCACACTAGCACTGTGACCACGATCACCTTTAGTCGC
GATGGAACAGTCCTGGCTGCAGCCGGCTTGGATAACAATCTAACTCTGTG
GGACTTTCACAAGGTTACCGAAGACTATATCAGCAATCACATCACTGTGT
CGCACCATCAGGATGAGAACGACGAGGACGTCTACCTCATGCGTACTTTC
CCCAGCAAGAACTCGCCATTTGTCAGCCTGCACTTTACGCGCCGAAATCT
CCTGATGTGCGTGGGTCTATTCAAGAGTGCAAGCTTTCTAGACCAT
BO01277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-RA | 2115 | CG7704-PA | 1..2112 | 17..2128 | 10560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-RA | 2362 | CG7704-RA | 69..2180 | 17..2128 | 10560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10877494..10879605 | 2128..17 | 10560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:51:08 has no hits.
BO01277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:15 Download gff for
BO01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 1..2115 | 17..2129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:36 Download gff for
BO01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 57..2177 | 8..2128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:26 Download gff for
BO01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 69..2180 | 17..2130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:16 Download gff for
BO01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 57..2177 | 8..2128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:01 Download gff for
BO01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf5-RA | 69..2180 | 17..2130 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:01 Download gff for
BO01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10877492..10879605 | 17..2130 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:26 Download gff for
BO01277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6764997..6767110 | 17..2130 | 99 | | Minus |
BO01277.pep Sequence
Translation from 16 to 2146
> BO01277.pep
MSLEVSNINGGNGTQLSHDKRELLCLLKLIKKYQLKSTEELLCQEANVSS
VELSEISESDVQQVLGAVLGAGDANRERKHVQSPAQGHKQSAVTEANAAE
ELAKFIDDDSFDAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIY
FKILASGLREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVV
AMEQDKFVIRMSRDSHSLFKRHIQDRRQEVVADIVSKYLHFDTYEGMARN
KLQCVATAGSHLGEAKRQDNKMRVYYGLLKEVDFQTLTTPAPAPEEEDDD
PDAPDRPKKKKPKKDPLLSKKSKSDPNAPSIDRIPLPELKDSDKLLKLKA
LREASKRLALSKDQLPSAVFYTVLNSHQGVTCAEISDDSTMLACGFGDSS
VRIWSLTPAKLRTLKDADSLRELDKESADINVRMLDDRSGEVTRSLMGHT
GPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRF
APHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVA
TGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNI
IIWDLSNGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLTLWDFHKV
TEDYISNHITVSHHQDENDEDVYLMRTFPSKNSPFVSLHFTRRNLLMCVG
LFKSASFLDH
BO01277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf5-PA | 704 | CG7704-PA | 1..704 | 1..704 | 3652 | 100 | Plus |
| can-PA | 942 | CG6577-PA | 247..876 | 44..697 | 883 | 33 | Plus |
| wda-PA | 743 | CG4448-PA | 322..698 | 305..651 | 462 | 28.7 | Plus |
| wds-PB | 361 | CG17437-PB | 66..354 | 371..644 | 353 | 29.8 | Plus |
| wds-PA | 361 | CG17437-PA | 66..354 | 371..644 | 353 | 29.8 | Plus |
| wds-PB | 361 | CG17437-PB | 67..272 | 445..649 | 328 | 34.5 | Plus |
