Clone Sequence Records
BO01281.3prime Sequence
880 bp (790 high quality bases) assembled on 2005-11-30
> BO01281.3prime
ATGGTCTAGAAAGCTTGCTCCACTAACCGAGCGCGATTCGTTCAACTCCA
TTTGGTAACTGGCCAGAGTGTCCTGACGTTGCTTCAGCTGCAGCGACAAA
AGCTGGCGCTGCATACTAAGCTCCTTCTCCTCCTGGGTCAGCTGGATGCA
TAGCTTGGCCGCCTCTCGCAGGATATTTACCTTGGGAGCCCGCTCCTTGT
CCCTAATTGTGGGAATCTGTTTCTTTAGAGCCTCAAAGAGGTTCTTGAGT
CCAATGCGTCGCTGACGCTCCATATCATTGTGCTGATTGCGCTTCTCGAT
CGTATCGGCCTCATCAAAGCCCAAAACAAAGTCCTTCCGATGGACACTGC
TGTTGGAGCTTGTGCTAGTGGCAATTCCACCACTGCGCCGCTGCCAATTA
CGATCCATGGCATCCACATCCTGGCCAGACGATATCGGAGATGTATTGCC
AGACGAGGTGCCAACCACCTTCTTGCCACGACTCTTTTTGCTCATCATGG
AGCTATGCGTCACTTTGTTATTGACTCCCGGCAGATAAACGCTGCTGGAG
GAGATCAACAAGCCTGGATCCTTCAGACTGGATCGTTTGCGTCCCTTGTT
CGAACTGGAGGTGGTGAAGCTTGACTGCGAACTGGAACTGGAGCTGCTCG
AGCTGACATTTGAAGAGTCCACGGATAGCGGCGAGTAGGACGGCGAAGCG
GAGGAGCAGTTCTGATACGGTGTGCTCGACGGTGATGGATAACGCGAGTT
GGCCACCGATTTCACTGGACTGCTGCTGGCCGGTGTGTACGGCAGATTGA
AGTTATTGTAGCGCGGTTTTTGCTTCATGTGATCAATCGAGATCTTATGG
GCCATCTGGAACTGTAGGGCGCCCATCAAG
BO01281.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10798-PA | 2154 | dm-RA | 1290..2151 | 880..19 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dm-RA | 3484 | CG10798-RA | 1921..2782 | 880..19 | 4310 | 100 | Minus |
| dm-RB | 9166 | CG10798-RB | 1917..2778 | 880..19 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3384448..3385309 | 880..19 | 4310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:44:55 has no hits.
BO01281.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:27:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:44 Download gff for
BO01281.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10798-PA | 1290..2154 | 18..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:35 Download gff for
BO01281.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RB | 1917..2778 | 19..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:37 Download gff for
BO01281.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RB | 1917..2778 | 19..880 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:37 Download gff for
BO01281.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3384448..3385309 | 19..880 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:35 Download gff for
BO01281.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3278481..3279342 | 19..880 | 100 | | Minus |
BO01281.5prime Sequence
761 bp (759 high quality bases) assembled on 2005-11-30
> BO01281.5prime
GAAGTTATCAGTCGACATGGCCCTTTACCGCTCTGATCCGTATTCCATAA
TGGACGACCAACTTTTTTCAAATATTTCAATATTCGATATGGATAATGAT
CTGTACGATATGGACAAACTCCTTTCGTCGTCCACCATTCAGAGTGATCT
CGAGAAGATCGAGGACATGGAAAGTGTATTTCAAGACTATGACTTAGAGG
AGGATATGAAGCCAGAGATCCGCAACATCGACTGCATGTGGCCGGCGATG
TCCAGCTGTTTGACCAGCGGTAACGGTAATGGAATAGAGAGCGGAAACAG
TGCAGCCTCGTCGTACAGCGAAACCGGTGCCGTATCCCTGGCGATGGTTT
CCGGCTCTACGAATCTCTACAGCGCGTATCAACGATCGCAGACGACAGAT
AACACCCAGTCAAATCAACAGCATGTCGTCAACAGTGCCGAGAACATGCC
GGTGATCATCAAGAAGGAGCTCGCAGATCTGGACTACACGGTCTGTCAGA
AGCGCCTCCGTTTGAGCGGCGGTGACAAGAAGTCACAGATCCAGGACGAG
GTCCATTTAATACCGCCCGGCGGAAGTTTGCTCCGCAAGCGGAACAACCA
GGACATTATCCGCAAATCGGGCGAATTGAGCGGCAGCGATAGCATAAAAT
ACCAGAGACCAGACACACCTCACAGTCTTACCGACGAGGTGGCCGCCTCA
GAGTTTAGACATAACGTCGACTTGCGTGCCTGCGTGATGGGCAGCAATAA
TATCTCGCTGA
BO01281.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10798-PA | 2154 | dm-RA | 1..745 | 17..761 | 3725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dm-RA | 3484 | CG10798-RA | 632..1376 | 17..761 | 3725 | 100 | Plus |
| dm-RB | 9166 | CG10798-RB | 628..1372 | 17..761 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3375006..3375750 | 17..761 | 3725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:02:43 has no hits.
BO01281.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:27:26 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:23:45 Download gff for
BO01281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10798-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:09 Download gff for
BO01281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RB | 619..1371 | 7..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:52 Download gff for
BO01281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RB | 619..1371 | 7..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:52 Download gff for
BO01281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3374997..3375749 | 7..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:09 Download gff for
BO01281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3269030..3269782 | 7..760 | 99 | | Plus |
BO01281.complete Sequence
2185 bp (2185 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629465
> BO01281.complete
GAAGTTATCAGTCGACATGGCCCTTTACCGCTCTGATCCGTATTCCATAA
TGGACGACCAACTTTTTTCAAATATTTCAATATTCGATATGGATAATGAT
CTGTACGATATGGACAAACTCCTTTCGTCGTCCACCATTCAGAGTGATCT
CGAGAAGATCGAGGACATGGAAAGTGTATTTCAAGACTATGACTTAGAGG
AGGATATGAAGCCAGAGATCCGCAACATCGACTGCATGTGGCCGGCGATG
TCCAGCTGTTTGACCAGCGGTAACGGTAATGGAATAGAGAGCGGAAACAG
TGCAGCCTCGTCGTACAGCGAAACCGGTGCCGTATCCCTGGCGATGGTTT
CCGGCTCTACGAATCTCTACAGCGCGTATCAACGATCGCAGACGACAGAT
AACACCCAGTCAAATCAACAGCATGTCGTCAACAGTGCCGAGAACATGCC
GGTGATCATCAAGAAGGAGCTCGCAGATCTGGACTACACGGTCTGTCAGA
AGCGCCTCCGTTTGAGCGGCGGTGACAAGAAGTCACAGATCCAGGACGAG
GTCCATTTAATACCGCCCGGCGGAAGTTTGCTCCGCAAGCGGAACAACCA
GGACATTATCCGCAAATCGGGCGAATTGAGCGGCAGCGATAGCATAAAAT
ACCAGAGACCAGACACACCTCACAGTCTTACCGACGAGGTGGCCGCCTCA
GAGTTTAGACATAACGTCGACTTGCGTGCCTGCGTGATGGGCAGCAATAA
TATCTCGCTGACCGGCAATGATAGCGATGTCAACTACATTAAGCAAATCA
GCAGGGAGCTTCAGAATACCGGCAAGGATCCGTTGCCGGTGCGTTACATC
CCGCCGATCAACGATGTCCTCGATGTGCTCAACCAGCATTCCAATTCGAC
GGGTGGCCAACAGCAGTTGAACCAACAGCAACTGGACGAGCAACAACAGG
CCATCGATATAGCCACTGGACGCAACACAGTGGATTCTCCGCCGACGACC
GGCTCTGATAGTGACTCCGATGACGGTGAACCCCTCAACTTTGACCTGCG
CCATCATCGCACTAGCAAAAGCGGCAGCAATGCCAGCATCACCACCAACA
ACAACAACAGCAACAACAAAAACAACAAATTGAAGAACAACAGCAACGGC
ATGCTGCACATGATGCACATCACCGATCACAGCTACACGCGCTGCAACGA
TATGGTGGACGATGGTCCCAATTTGGAGACCCCCTCAGATTCCGATGAGG
AAATCGATGTCGTTTCATATACGGACAAGAAGCTACCCACAAATCCCTCG
TGCCACTTGATGGGCGCCCTACAGTTCCAGATGGCCCATAAGATCTCGAT
TGATCACATGAAGCAAAAACCGCGCTACAATAACTTCAATCTGCCGTACA
CACCGGCCAGCAGCAGTCCAGTGAAATCGGTGGCCAACTCGCGTTATCCA
TCACCGTCGAGCACACCGTATCAGAACTGCTCCTCCGCTTCGCCGTCCTA
CTCGCCGCTATCCGTGGACTCTTCAAATGTCAGCTCGAGCAGCTCCAGTT
CCAGTTCGCAGTCAAGCTTCACCACCTCCAGTTCGAACAAGGGACGCAAA
CGATCCAGTCTGAAGGATCCAGGCTTGTTGATCTCCTCCAGCAGCGTTTA
TCTGCCGGGAGTCAATAACAAAGTGACGCATAGCTCCATGATGAGCAAAA
AGAGTCGTGGCAAGAAGGTGGTTGGCACCTCGTCTGGCAATACATCTCCG
ATATCGTCTGGCCAGGATGTGGATGCCATGGATCGTAATTGGCAGCGGCG
CAGTGGTGGAATTGCCACTAGCACAAGCTCCAACAGCAGTGTCCATCGGA
AGGACTTTGTTTTGGGCTTTGATGAGGCCGATACGATCGAGAAGCGCAAT
CAGCACAATGATATGGAGCGTCAGCGACGCATTGGACTCAAGAACCTCTT
TGAGGCTCTAAAGAAACAGATTCCCACAATTAGGGACAAGGAGCGGGCTC
CCAAGGTAAATATCCTGCGAGAGGCGGCCAAGCTATGCATCCAGCTGACC
CAGGAGGAGAAGGAGCTTAGTATGCAGCGCCAGCTTTTGTCGCTGCAGCT
GAAGCAACGTCAGGACACTCTGGCCAGTTACCAAATGGAGTTGAACGAAT
CGCGCTCGGTTAGTGGAGCAAGCTTTCTAGACCAT
BO01281.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dm-RA | 2154 | CG10798-PA | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| dm-RB | 2154 | CG10798-PB | 1..2151 | 17..2167 | 10755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dm-RA | 3484 | CG10798-RA | 632..2782 | 17..2167 | 10755 | 100 | Plus |
| dm-RB | 9166 | CG10798-RB | 628..2778 | 17..2167 | 10755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3375006..3376238 | 17..1249 | 6150 | 99.9 | Plus |
| X | 23542271 | X | 3384386..3385309 | 1244..2167 | 4620 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6961..7064 | 1055..1156 | 137 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..7005 | 908..1187 | 130 | 54.4 | Plus |
BO01281.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:08 Download gff for
BO01281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RA | 1..2154 | 17..2168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:27 Download gff for
BO01281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RA | 608..2758 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:12 Download gff for
BO01281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RB | 628..2778 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:09 Download gff for
BO01281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RA | 599..2758 | 7..2167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:11 Download gff for
BO01281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dm-RB | 628..2778 | 17..2169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:11 Download gff for
BO01281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3375006..3376233 | 17..1244 | 100 | -> | Plus |
| X | 3384387..3385309 | 1245..2169 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:12 Download gff for
BO01281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3269039..3270266 | 17..1244 | 100 | -> | Plus |
| arm_X | 3278420..3279342 | 1245..2169 | 99 | | Plus |
BO01281.pep Sequence
Translation from 16 to 2185
> BO01281.pep
MALYRSDPYSIMDDQLFSNISIFDMDNDLYDMDKLLSSSTIQSDLEKIED
MESVFQDYDLEEDMKPEIRNIDCMWPAMSSCLTSGNGNGIESGNSAASSY
SETGAVSLAMVSGSTNLYSAYQRSQTTDNTQSNQQHVVNSAENMPVIIKK
ELADLDYTVCQKRLRLSGGDKKSQIQDEVHLIPPGGSLLRKRNNQDIIRK
SGELSGSDSIKYQRPDTPHSLTDEVAASEFRHNVDLRACVMGSNNISLTG
NDSDVNYIKQISRELQNTGKDPLPVRYIPPINDVLDVLNQHSNSTGGQQQ
LNQQQLDEQQQAIDIATGRNTVDSPPTTGSDSDSDDGEPLNFDLRHHRTS
KSGSNASITTNNNNSNNKNNKLKNNSNGMLHMMHITDHSYTRCNDMVDDG
PNLETPSDSDEEIDVVSYTDKKLPTNPSCHLMGALQFQMAHKISIDHMKQ
KPRYNNFNLPYTPASSSPVKSVANSRYPSPSSTPYQNCSSASPSYSPLSV
DSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVN
NKVTHSSMMSKKSRGKKVVGTSSGNTSPISSGQDVDAMDRNWQRRSGGIA
TSTSSNSSVHRKDFVLGFDEADTIEKRNQHNDMERQRRIGLKNLFEALKK
QIPTIRDKERAPKVNILREAAKLCIQLTQEEKELSMQRQLLSLQLKQRQD
TLASYQMELNESRSVSGASFLDH
BO01281.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dm-PA | 717 | CG10798-PA | 1..717 | 1..717 | 3680 | 100 | Plus |
| dm-PB | 717 | CG10798-PB | 1..717 | 1..717 | 3680 | 100 | Plus |
