Clone BO01289 Report

Search the DGRC for BO01289

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG12299-RA
Protein status:BO01289.pep: validated full length
Sequenced Size:2242

Clone Sequence Records

BO01289.3prime Sequence

801 bp (800 high quality bases) assembled on 2005-11-30

> BO01289.3prime
ATGGTCTAGAAAGCTTGCGATGAGCGCATCGGTGTAAACCTCCTCCTCGT
TGACGACAAAGTCGCCGAACACCTCCTCCTGACAGCCCACGTCCATGTCG
CCGAAGTCCTCGTAGTACATGTCAGAGTCTAGCAGGATCTGTTCCTCCTG
CAGCCCGAGAATGGGATAGCCCGGATTGGTGAGAGCGTCCTCTGCTGCCA
GCACTTCCGTTTTCACCTCCGCCGGCTCCTCTGGTTCATCTTGTTCCTCC
TCCTCATCCGGCGGTTCCTCCGCTTCGTCGGGCTCTTCTTCGTCCTCGCC
GGTGGAGTCCATGGCTGGCAACTTGGGCTGCTGCGGTAGCTGCATCTGAT
GCGGCTGTTGTTGCAGATGCTGCTGCTGTTGTTGTTGCGGATGTTGCTGT
TGTTGTTGCGGAGGTTGTTGCTGGTGCTGTTGATGCTGCTGCTGATGGTT
CATCTGCTGCAGGACGCACTGAACCCGCTCCACATAGGCTTGCTGCTCCT
CTGCACTGCACTTGACGTCTGGAATCGCTCCGCCCGGCGCCGTGTTCATT
CCGGACTGCTTCATCGTGTCCAGCAGCGCTGCGTGCTGGCTGTGCACATG
GCTGGCCAGTGCAGTGGCATCCGCATGCAACGATCCGCAGACAATGCAAA
CGAGTGTTTCGTGCGGCTGCTTGGCGACCAGCAGGCCAGGCGACGTGGAT
GCGGAGGCGGCCGAAGCCATCTGGTGCGCCTGGATGTGCTTGTTGAGGTA
CGCCTGCTGGCTGTACGACTTGCCGCATATGGGACACGGGTAGGGCTTCT
C

BO01289.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-PA 2211 CG12299-RA 1426..2208 801..19 3915 100 Minus
CG16902-PC 4557 Hr4-RC 3130..3158 444..416 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-RA 3310 CG12299-RA 1861..2643 801..19 3915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10739313..10740095 801..19 3915 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:08:44 has no hits.

BO01289.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:39 Download gff for BO01289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-PA 1426..2211 18..801 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:03 Download gff for BO01289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-PA 1426..2211 18..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:07 Download gff for BO01289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 1861..2643 19..801 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:19 Download gff for BO01289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 1861..2643 19..801 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:19 Download gff for BO01289.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10739313..10740095 19..801 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:07 Download gff for BO01289.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10739313..10740095 19..801 100   Minus

BO01289.5prime Sequence

870 bp (821 high quality bases) assembled on 2005-11-30

> BO01289.5prime
GAAGTTATCAGTCGACATGGCCGTGCAGCTGAAACAGAGCTACCACCACC
TGCCCCTGACGATCACGCCAATCCTGCAGCAGACGCACCTCCTGCCGCAA
CAGGCACCCAATCCACCCCAGCAGCAACCGCAGCAGCCACAGCCGCCGGA
TCTCACCTTCCACTGCATGTGCTGTGCGGAGTTCTTCGTCCATCCGCTGG
CGCTGTACCAGCACATGAACACCCTGCACCCCCATGAGCCGGGCAATGGA
CAGCAAGAGCAGGAGAGCCCGGGCGACGAGAGCGAGGACTACAGCTGGAT
ATTCGAGCCGGTGTGCGAGCTGGCGGAGGATGGCAGCGACTCGTCGGATG
GGAGCGCCTCCTCGGGCTCCGACAGCTCCTCGTCGTCGGACGACGACGAT
GACGATGACGACGACGACAGCAGCAGCTCCAGTTCGAGTTCCAGCAACTC
GAGCTCATCAAGCAGCTCGGTGCCGACCACCAGCAACTCCAATACCCAGC
AGAGCCAGGAGTCAGTGCAGCCACTTCACGGCCTGGTTGCCGGTCCGGGC
TACAATGAGTTCCAGCTGCAGATGACAGATCCGCGGGAGTCCACCTCCAT
ATTCATGGTGCAGCCGACCGTAAGCGTCACGCCCTTGCAGCAGCTACTAC
CACCGGCACCCACTGTTAGCCCGGGATTGGGCCTGCAATCGACGCCCATC
AAGCGGCGGCGCGGAAGGCGGAGCAACATCGGTGCACCCGTGATGGATCC
AGCGTTGAATGGCAACCAGAAATGCTTCCAGTGCACGCACTGCGAGGCGA
GCTTTCCCAACGCCGGCGATCTGTCCAAGCACGTGCGCTCGCACATCACC
AACAAGCCGTTCCAGTGCTC

BO01289.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-PA 2211 CG12299-RA 1..854 17..870 4270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-RA 3310 CG12299-RA 436..1289 17..870 4270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10737888..10738741 17..870 4270 100 Plus
Blast to na_te.dros performed 2015-02-04 18:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 115..173 78..137 126 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9145..9203 78..137 126 70 Plus

BO01289.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:40 Download gff for BO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-PA 1..854 17..870 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:04 Download gff for BO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-PA 1..854 17..870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:42 Download gff for BO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 436..1289 17..870 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:44 Download gff for BO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 436..1289 17..870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:44 Download gff for BO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10737888..10738741 17..870 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:42 Download gff for BO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10737888..10738741 17..870 100   Plus

BO01289.complete Sequence

2242 bp (2242 high quality bases) assembled on 2006-05-02

GenBank Submission: FJ629467

> BO01289.complete
GAAGTTATCAGTCGACATGGCCGTGCAGCTGAAACAGAGCTACCACCACC
TGCCCCTGACGATCACGCCAATCCTGCAGCAGACGCACCTCCTGCCGCAA
CAGGCACCCAATCCACCCCAGCAGCAACCGCAGCAGCCACAGCCGCCGGA
TCTCACCTTCCACTGCATGTGCTGTGCGGAGTTCTTCGTCCATCCGCTGG
CGCTGTACCAGCACATGAACACCCTGCACCCCCATGAGCCGGGCAATGGA
CAGCAAGAGCAGGAGAGCCCGGGCGACGAGAGCGAGGACTACAGCTGGAT
ATTCGAGCCGGTGTGCGAGCTGGCGGAGGATGGCAGCGACTCGTCGGATG
GGAGCGCCTCCTCGGGCTCCGACAGCTCCTCGTCGTCGGACGACGACGAT
GACGATGACGACGACGACAGCAGCAGCTCCAGTTCGAGTTCCAGCAACTC
GAGCTCATCAAGCAGCTCGGTGCCGACCACCAGCAACTCCAATACCCAGC
AGAGCCAGGAGTCAGTGCAGCCACTTCACGGCCTGGTTGCCGGTCCGGGC
TACAATGAGTTCCAGCTGCAGATGACAGATCCGCGGGAGTCCACCTCCAT
ATTCATGGTGCAGCCGACCGTAAGCGTCACGCCCTTGCAGCAGCTACTAC
CACCGGCACCCACTGTTAGCCCGGGATTGGGCCTGCAATCGACGCCCATC
AAGCGGCGGCGCGGAAGGCGGAGCAACATCGGTGCACCCGTGATGGATCC
AGCGTTGAATGGCAACCAGAAATGCTTCCAGTGCACGCACTGCGAGGCGA
GCTTTCCCAACGCCGGCGATCTGTCCAAGCACGTGCGCTCGCACATCACC
AACAAGCCGTTCCAGTGCTCCATCTGCCAGAAGACATTCACGCACATCGG
CAGCCTGAACACGCACATCCGCATCCACAGCGGCGAGAAGCCGTACAAGT
GCGAGCTCTGCCCGAAGGCCTTCACGCAGTCCAGCAGCCTGATGGTGCAC
ATGCGCTCGCATTCGGTGCGCAAGCCGCATCAGTGTGTGCAGTGCGACAA
GGGATTCATCAACTACAGCTCGCTGCTGCTGCACCAGAAGACGCACATCG
CGCCCACGGAGACGTTCATCTGTCCGGAGTGCGAGCGCGAATTCAAGGCG
GAGGCGCTGCTCGACGAGCACATGCGCATGCATACGCAGGAGCTGGTGTA
CCAGTGCGCCATCTGCCGCGAGGCCTTCCGCGCCAGCTCGGAGCTGGTAC
AGCACATGAAGAACCACATGGGCGAGAAGCCATTCACCTGCTCGCTGTGC
GACCGCTCGTTCACGCAGTCGGGTAGCCTGAACATCCACATGCGCATCCA
TACCGGCGAAAAGCCGTTCCAGTGCAAGCTATGCGACAAGTGCTTCACAC
AGGCCTCCAGTCTGAGTGTTCACATGAAGATCCATGCGGGCGAGAAGCCC
TACCCGTGTCCCATATGCGGCAAGTCGTACAGCCAGCAGGCGTACCTCAA
CAAGCACATCCAGGCGCACCAGATGGCTTCGGCCGCCTCCGCATCCACGT
CGCCTGGCCTGCTGGTCGCCAAGCAGCCGCACGAAACACTCGTTTGCATT
GTCTGCGGATCGTTGCATGCGGATGCCACTGCACTGGCCAGCCATGTGCA
CAGCCAGCACGCAGCGCTGCTGGACACGATGAAGCAGTCCGGAATGAACA
CGGCGCCGGGCGGAGCGATTCCAGACGTCAAGTGCAGTGCAGAGGAGCAG
CAAGCCTATGTGGAGCGGGTTCAGTGCGTCCTGCAGCAGATGAACCATCA
GCAGCAGCATCAACAGCACCAGCAACAACCTCCGCAACAACAACAGCAAC
ATCCGCAACAACAACAGCAGCAGCATCTGCAACAACAGCCGCATCAGATG
CAGCTACCGCAGCAGCCCAAGTTGCCAGCCATGGACTCCACCGGCGAGGA
CGAAGAAGAGCCCGACGAAGCGGAGGAACCGCCGGATGAGGAGGAGGAAC
AAGATGAACCAGAGGAGCCGGCGGAGGTGAAAACGGAAGTGCTGGCAGCA
GAGGACGCTCTCACCAATCCGGGCTATCCCATTCTCGGGCTGCAGGAGGA
ACAGATCCTGCTAGACTCTGACATGTACTACGAGGACTTCGGCGACATGG
ACGTGGGCTGTCAGGAGGAGGTGTTCGGCGACTTTGTCGTCAACGAGGAG
GAGGTTTACACCGATGCGCTCATCGCAAGCTTTCTAGACCAT

BO01289.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-RA 2211 CG12299-PA 1..2208 17..2224 11040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-RA 3310 CG12299-RA 436..2643 17..2224 11040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10737888..10740095 17..2224 11040 100 Plus
Blast to na_te.dros performed 2014-11-27 13:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 115..173 78..137 126 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9145..9203 78..137 126 70 Plus

BO01289.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:56 Download gff for BO01289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 1..2211 17..2225 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:14 Download gff for BO01289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 434..2641 17..2224 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:26 Download gff for BO01289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 436..2643 17..2226 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:56 Download gff for BO01289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 434..2641 17..2224 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:43 Download gff for BO01289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12299-RA 436..2643 17..2226 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:43 Download gff for BO01289.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10737888..10740095 17..2226 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:26 Download gff for BO01289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10737888..10740095 17..2226 99   Plus

BO01289.pep Sequence

Translation from 16 to 2242

> BO01289.pep
MAVQLKQSYHHLPLTITPILQQTHLLPQQAPNPPQQQPQQPQPPDLTFHC
MCCAEFFVHPLALYQHMNTLHPHEPGNGQQEQESPGDESEDYSWIFEPVC
ELAEDGSDSSDGSASSGSDSSSSSDDDDDDDDDDSSSSSSSSSNSSSSSS
SVPTTSNSNTQQSQESVQPLHGLVAGPGYNEFQLQMTDPRESTSIFMVQP
TVSVTPLQQLLPPAPTVSPGLGLQSTPIKRRRGRRSNIGAPVMDPALNGN
QKCFQCTHCEASFPNAGDLSKHVRSHITNKPFQCSICQKTFTHIGSLNTH
IRIHSGEKPYKCELCPKAFTQSSSLMVHMRSHSVRKPHQCVQCDKGFINY
SSLLLHQKTHIAPTETFICPECEREFKAEALLDEHMRMHTQELVYQCAIC
REAFRASSELVQHMKNHMGEKPFTCSLCDRSFTQSGSLNIHMRIHTGEKP
FQCKLCDKCFTQASSLSVHMKIHAGEKPYPCPICGKSYSQQAYLNKHIQA
HQMASAASASTSPGLLVAKQPHETLVCIVCGSLHADATALASHVHSQHAA
LLDTMKQSGMNTAPGGAIPDVKCSAEEQQAYVERVQCVLQQMNHQQQHQQ
HQQQPPQQQQQHPQQQQQQHLQQQPHQMQLPQQPKLPAMDSTGEDEEEPD
EAEEPPDEEEEQDEPEEPAEVKTEVLAAEDALTNPGYPILGLQEEQILLD
SDMYYEDFGDMDVGCQEEVFGDFVVNEEEVYTDALIASFLDH

BO01289.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12299-PA 736 CG12299-PA 1..736 1..736 3954 100 Plus
crol-PB 891 CG14938-PB 390..860 255..665 573 28.5 Plus
crol-PH 686 CG14938-PH 142..655 211..665 566 27.9 Plus
crol-PC 756 CG14938-PC 268..725 255..665 561 30.1 Plus
crol-PG 878 CG14938-PG 390..847 255..665 561 30.1 Plus
crol-PB 891 CG14938-PB 299..551 248..501 514 35 Plus
crol-PB 891 CG14938-PB 135..551 113..548 513 28.8 Plus
crol-PC 756 CG14938-PC 142..426 211..498 505 32.5 Plus
crol-PB 891 CG14938-PB 362..836 255..667 502 26.3 Plus
crol-PB 891 CG14938-PB 501..858 254..637 467 30.3 Plus