Clone Sequence Records
BO01289.3prime Sequence
801 bp (800 high quality bases) assembled on 2005-11-30
> BO01289.3prime
ATGGTCTAGAAAGCTTGCGATGAGCGCATCGGTGTAAACCTCCTCCTCGT
TGACGACAAAGTCGCCGAACACCTCCTCCTGACAGCCCACGTCCATGTCG
CCGAAGTCCTCGTAGTACATGTCAGAGTCTAGCAGGATCTGTTCCTCCTG
CAGCCCGAGAATGGGATAGCCCGGATTGGTGAGAGCGTCCTCTGCTGCCA
GCACTTCCGTTTTCACCTCCGCCGGCTCCTCTGGTTCATCTTGTTCCTCC
TCCTCATCCGGCGGTTCCTCCGCTTCGTCGGGCTCTTCTTCGTCCTCGCC
GGTGGAGTCCATGGCTGGCAACTTGGGCTGCTGCGGTAGCTGCATCTGAT
GCGGCTGTTGTTGCAGATGCTGCTGCTGTTGTTGTTGCGGATGTTGCTGT
TGTTGTTGCGGAGGTTGTTGCTGGTGCTGTTGATGCTGCTGCTGATGGTT
CATCTGCTGCAGGACGCACTGAACCCGCTCCACATAGGCTTGCTGCTCCT
CTGCACTGCACTTGACGTCTGGAATCGCTCCGCCCGGCGCCGTGTTCATT
CCGGACTGCTTCATCGTGTCCAGCAGCGCTGCGTGCTGGCTGTGCACATG
GCTGGCCAGTGCAGTGGCATCCGCATGCAACGATCCGCAGACAATGCAAA
CGAGTGTTTCGTGCGGCTGCTTGGCGACCAGCAGGCCAGGCGACGTGGAT
GCGGAGGCGGCCGAAGCCATCTGGTGCGCCTGGATGTGCTTGTTGAGGTA
CGCCTGCTGGCTGTACGACTTGCCGCATATGGGACACGGGTAGGGCTTCT
C
BO01289.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-PA | 2211 | CG12299-RA | 1426..2208 | 801..19 | 3915 | 100 | Minus |
CG16902-PC | 4557 | Hr4-RC | 3130..3158 | 444..416 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-RA | 3310 | CG12299-RA | 1861..2643 | 801..19 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10739313..10740095 | 801..19 | 3915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:08:44 has no hits.
BO01289.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:39 Download gff for
BO01289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-PA | 1426..2211 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:03 Download gff for
BO01289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-PA | 1426..2211 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:07 Download gff for
BO01289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 1861..2643 | 19..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:19 Download gff for
BO01289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 1861..2643 | 19..801 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:19 Download gff for
BO01289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10739313..10740095 | 19..801 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:07 Download gff for
BO01289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10739313..10740095 | 19..801 | 100 | | Minus |
BO01289.5prime Sequence
870 bp (821 high quality bases) assembled on 2005-11-30
> BO01289.5prime
GAAGTTATCAGTCGACATGGCCGTGCAGCTGAAACAGAGCTACCACCACC
TGCCCCTGACGATCACGCCAATCCTGCAGCAGACGCACCTCCTGCCGCAA
CAGGCACCCAATCCACCCCAGCAGCAACCGCAGCAGCCACAGCCGCCGGA
TCTCACCTTCCACTGCATGTGCTGTGCGGAGTTCTTCGTCCATCCGCTGG
CGCTGTACCAGCACATGAACACCCTGCACCCCCATGAGCCGGGCAATGGA
CAGCAAGAGCAGGAGAGCCCGGGCGACGAGAGCGAGGACTACAGCTGGAT
ATTCGAGCCGGTGTGCGAGCTGGCGGAGGATGGCAGCGACTCGTCGGATG
GGAGCGCCTCCTCGGGCTCCGACAGCTCCTCGTCGTCGGACGACGACGAT
GACGATGACGACGACGACAGCAGCAGCTCCAGTTCGAGTTCCAGCAACTC
GAGCTCATCAAGCAGCTCGGTGCCGACCACCAGCAACTCCAATACCCAGC
AGAGCCAGGAGTCAGTGCAGCCACTTCACGGCCTGGTTGCCGGTCCGGGC
TACAATGAGTTCCAGCTGCAGATGACAGATCCGCGGGAGTCCACCTCCAT
ATTCATGGTGCAGCCGACCGTAAGCGTCACGCCCTTGCAGCAGCTACTAC
CACCGGCACCCACTGTTAGCCCGGGATTGGGCCTGCAATCGACGCCCATC
AAGCGGCGGCGCGGAAGGCGGAGCAACATCGGTGCACCCGTGATGGATCC
AGCGTTGAATGGCAACCAGAAATGCTTCCAGTGCACGCACTGCGAGGCGA
GCTTTCCCAACGCCGGCGATCTGTCCAAGCACGTGCGCTCGCACATCACC
AACAAGCCGTTCCAGTGCTC
BO01289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-PA | 2211 | CG12299-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-RA | 3310 | CG12299-RA | 436..1289 | 17..870 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10737888..10738741 | 17..870 | 4270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 18:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..173 | 78..137 | 126 | 70 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9203 | 78..137 | 126 | 70 | Plus |
BO01289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:40 Download gff for
BO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:04 Download gff for
BO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:42 Download gff for
BO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 436..1289 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:44 Download gff for
BO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 436..1289 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:44 Download gff for
BO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10737888..10738741 | 17..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:42 Download gff for
BO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10737888..10738741 | 17..870 | 100 | | Plus |
BO01289.complete Sequence
2242 bp (2242 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629467
> BO01289.complete
GAAGTTATCAGTCGACATGGCCGTGCAGCTGAAACAGAGCTACCACCACC
TGCCCCTGACGATCACGCCAATCCTGCAGCAGACGCACCTCCTGCCGCAA
CAGGCACCCAATCCACCCCAGCAGCAACCGCAGCAGCCACAGCCGCCGGA
TCTCACCTTCCACTGCATGTGCTGTGCGGAGTTCTTCGTCCATCCGCTGG
CGCTGTACCAGCACATGAACACCCTGCACCCCCATGAGCCGGGCAATGGA
CAGCAAGAGCAGGAGAGCCCGGGCGACGAGAGCGAGGACTACAGCTGGAT
ATTCGAGCCGGTGTGCGAGCTGGCGGAGGATGGCAGCGACTCGTCGGATG
GGAGCGCCTCCTCGGGCTCCGACAGCTCCTCGTCGTCGGACGACGACGAT
GACGATGACGACGACGACAGCAGCAGCTCCAGTTCGAGTTCCAGCAACTC
GAGCTCATCAAGCAGCTCGGTGCCGACCACCAGCAACTCCAATACCCAGC
AGAGCCAGGAGTCAGTGCAGCCACTTCACGGCCTGGTTGCCGGTCCGGGC
TACAATGAGTTCCAGCTGCAGATGACAGATCCGCGGGAGTCCACCTCCAT
ATTCATGGTGCAGCCGACCGTAAGCGTCACGCCCTTGCAGCAGCTACTAC
CACCGGCACCCACTGTTAGCCCGGGATTGGGCCTGCAATCGACGCCCATC
AAGCGGCGGCGCGGAAGGCGGAGCAACATCGGTGCACCCGTGATGGATCC
AGCGTTGAATGGCAACCAGAAATGCTTCCAGTGCACGCACTGCGAGGCGA
GCTTTCCCAACGCCGGCGATCTGTCCAAGCACGTGCGCTCGCACATCACC
AACAAGCCGTTCCAGTGCTCCATCTGCCAGAAGACATTCACGCACATCGG
CAGCCTGAACACGCACATCCGCATCCACAGCGGCGAGAAGCCGTACAAGT
GCGAGCTCTGCCCGAAGGCCTTCACGCAGTCCAGCAGCCTGATGGTGCAC
ATGCGCTCGCATTCGGTGCGCAAGCCGCATCAGTGTGTGCAGTGCGACAA
GGGATTCATCAACTACAGCTCGCTGCTGCTGCACCAGAAGACGCACATCG
CGCCCACGGAGACGTTCATCTGTCCGGAGTGCGAGCGCGAATTCAAGGCG
GAGGCGCTGCTCGACGAGCACATGCGCATGCATACGCAGGAGCTGGTGTA
CCAGTGCGCCATCTGCCGCGAGGCCTTCCGCGCCAGCTCGGAGCTGGTAC
AGCACATGAAGAACCACATGGGCGAGAAGCCATTCACCTGCTCGCTGTGC
GACCGCTCGTTCACGCAGTCGGGTAGCCTGAACATCCACATGCGCATCCA
TACCGGCGAAAAGCCGTTCCAGTGCAAGCTATGCGACAAGTGCTTCACAC
AGGCCTCCAGTCTGAGTGTTCACATGAAGATCCATGCGGGCGAGAAGCCC
TACCCGTGTCCCATATGCGGCAAGTCGTACAGCCAGCAGGCGTACCTCAA
CAAGCACATCCAGGCGCACCAGATGGCTTCGGCCGCCTCCGCATCCACGT
CGCCTGGCCTGCTGGTCGCCAAGCAGCCGCACGAAACACTCGTTTGCATT
GTCTGCGGATCGTTGCATGCGGATGCCACTGCACTGGCCAGCCATGTGCA
CAGCCAGCACGCAGCGCTGCTGGACACGATGAAGCAGTCCGGAATGAACA
CGGCGCCGGGCGGAGCGATTCCAGACGTCAAGTGCAGTGCAGAGGAGCAG
CAAGCCTATGTGGAGCGGGTTCAGTGCGTCCTGCAGCAGATGAACCATCA
GCAGCAGCATCAACAGCACCAGCAACAACCTCCGCAACAACAACAGCAAC
ATCCGCAACAACAACAGCAGCAGCATCTGCAACAACAGCCGCATCAGATG
CAGCTACCGCAGCAGCCCAAGTTGCCAGCCATGGACTCCACCGGCGAGGA
CGAAGAAGAGCCCGACGAAGCGGAGGAACCGCCGGATGAGGAGGAGGAAC
AAGATGAACCAGAGGAGCCGGCGGAGGTGAAAACGGAAGTGCTGGCAGCA
GAGGACGCTCTCACCAATCCGGGCTATCCCATTCTCGGGCTGCAGGAGGA
ACAGATCCTGCTAGACTCTGACATGTACTACGAGGACTTCGGCGACATGG
ACGTGGGCTGTCAGGAGGAGGTGTTCGGCGACTTTGTCGTCAACGAGGAG
GAGGTTTACACCGATGCGCTCATCGCAAGCTTTCTAGACCAT
BO01289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-RA | 2211 | CG12299-PA | 1..2208 | 17..2224 | 11040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-RA | 3310 | CG12299-RA | 436..2643 | 17..2224 | 11040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10737888..10740095 | 17..2224 | 11040 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..173 | 78..137 | 126 | 70 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9203 | 78..137 | 126 | 70 | Plus |
BO01289.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:56 Download gff for
BO01289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 1..2211 | 17..2225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:14 Download gff for
BO01289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 434..2641 | 17..2224 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:26 Download gff for
BO01289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 436..2643 | 17..2226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:56 Download gff for
BO01289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 434..2641 | 17..2224 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:43 Download gff for
BO01289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12299-RA | 436..2643 | 17..2226 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:43 Download gff for
BO01289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10737888..10740095 | 17..2226 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:26 Download gff for
BO01289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10737888..10740095 | 17..2226 | 99 | | Plus |
BO01289.pep Sequence
Translation from 16 to 2242
> BO01289.pep
MAVQLKQSYHHLPLTITPILQQTHLLPQQAPNPPQQQPQQPQPPDLTFHC
MCCAEFFVHPLALYQHMNTLHPHEPGNGQQEQESPGDESEDYSWIFEPVC
ELAEDGSDSSDGSASSGSDSSSSSDDDDDDDDDDSSSSSSSSSNSSSSSS
SVPTTSNSNTQQSQESVQPLHGLVAGPGYNEFQLQMTDPRESTSIFMVQP
TVSVTPLQQLLPPAPTVSPGLGLQSTPIKRRRGRRSNIGAPVMDPALNGN
QKCFQCTHCEASFPNAGDLSKHVRSHITNKPFQCSICQKTFTHIGSLNTH
IRIHSGEKPYKCELCPKAFTQSSSLMVHMRSHSVRKPHQCVQCDKGFINY
SSLLLHQKTHIAPTETFICPECEREFKAEALLDEHMRMHTQELVYQCAIC
REAFRASSELVQHMKNHMGEKPFTCSLCDRSFTQSGSLNIHMRIHTGEKP
FQCKLCDKCFTQASSLSVHMKIHAGEKPYPCPICGKSYSQQAYLNKHIQA
HQMASAASASTSPGLLVAKQPHETLVCIVCGSLHADATALASHVHSQHAA
LLDTMKQSGMNTAPGGAIPDVKCSAEEQQAYVERVQCVLQQMNHQQQHQQ
HQQQPPQQQQQHPQQQQQQHLQQQPHQMQLPQQPKLPAMDSTGEDEEEPD
EAEEPPDEEEEQDEPEEPAEVKTEVLAAEDALTNPGYPILGLQEEQILLD
SDMYYEDFGDMDVGCQEEVFGDFVVNEEEVYTDALIASFLDH
BO01289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12299-PA | 736 | CG12299-PA | 1..736 | 1..736 | 3954 | 100 | Plus |
crol-PB | 891 | CG14938-PB | 390..860 | 255..665 | 573 | 28.5 | Plus |
crol-PH | 686 | CG14938-PH | 142..655 | 211..665 | 566 | 27.9 | Plus |
crol-PC | 756 | CG14938-PC | 268..725 | 255..665 | 561 | 30.1 | Plus |
crol-PG | 878 | CG14938-PG | 390..847 | 255..665 | 561 | 30.1 | Plus |
crol-PB | 891 | CG14938-PB | 299..551 | 248..501 | 514 | 35 | Plus |
crol-PB | 891 | CG14938-PB | 135..551 | 113..548 | 513 | 28.8 | Plus |
crol-PC | 756 | CG14938-PC | 142..426 | 211..498 | 505 | 32.5 | Plus |
crol-PB | 891 | CG14938-PB | 362..836 | 255..667 | 502 | 26.3 | Plus |
crol-PB | 891 | CG14938-PB | 501..858 | 254..637 | 467 | 30.3 | Plus |