Clone Sequence Records
BO01293.3prime Sequence
848 bp (817 high quality bases) assembled on 2005-11-30
> BO01293.3prime
ATGGTCTAGAAAGCTTGCATCGCTTTCATTGGATTCATCAGCGGATGTCG
TTTCGTCTGATTGACCACCATCTGTCTTGGTCAAATTCATAGGCGACCCT
TTGGGCTTTGGCATGACTTGTGATGAATTCAATGATTTAAATGACAAGGG
TTCTAAATTTGGCTCCGTCTTGGCTCCCTCTTGCGGCAGCTCATCGCTGT
TGCCTGCCAAGTCCTCCGTCTGGTCATCCCTGGGCTTTCGTAAATCCAGT
GCCGAGGTCGAATGAGCACTATCCACCATCTCGATGATCTCCTCCGTTTC
CATGGGATGATGGTCGTCTAGCTTCTCCGGCGGCATCACAATCATTTCAC
CCGTGCGCATTCCCTTCGAATCGGCCAATTGTTCGGCGCTTACCTTCATC
ATAGTCAGATACTGATTGTACTTGGCGTAGTTGCGCCTACCGGTCTCATC
GTTCATCAGCACCTGGGCCTGGTTATGGGATCTATCGCGGAGGGCCTTCA
AACGGATGTGCTTGGTGATGTCCCAGCGCCAGTTGGAAGCGATAGGCGCA
CAGAGAGCATTCAAAGGGCTTCCTATTTAGATGACCAACGATGTGGACAT
GGAAGCGAGATGCAGTGGCTGCCCAAAAACTGCAATGAGGACACTTAAAA
ACCTTCTTCAATGGCGCCAAATCTTCGGGTTCCTCTGGCAAAACTTCTGT
GACCTCCCCATAGCCAGGAGCTGTTTCTACGCCGCAATAACTGAGATCAG
TGGGAGCATTGGGGAAGTCCTCATCGTGAAGATCCACCTCCGCGTTGATA
GAAGCCTGCAGTTGGGTGGTGTTGTGCAAGGCCAAAGTGCACACTTGT
BO01293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-PA | 2244 | CG5204-RA | 1723..2241 | 537..19 | 2595 | 100 | Minus |
| CG5204-PA | 2244 | CG5204-RA | 1413..1723 | 848..538 | 1555 | 100 | Minus |
| CG9932-PA | 6516 | CG9932-RA | 2551..2592 | 537..496 | 185 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-RA | 2364 | CG5204-RA | 1486..2314 | 848..19 | 4125 | 99.9 | Minus |
| CG9932-RE | 8986 | CG9932-RE | 3444..3713 | 660..390 | 565 | 80.8 | Minus |
| CG9932-RD | 7646 | CG9932-RD | 3444..3713 | 660..390 | 565 | 80.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13162418..13163103 | 705..19 | 3385 | 99.9 | Minus |
| 2L | 23513712 | 2L | 13162218..13162364 | 848..702 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 13028236..13028505 | 390..660 | 540 | 80.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 18:50:18 has no hits.
BO01293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:45 Download gff for
BO01293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-PA | 1413..2244 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:14 Download gff for
BO01293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-PA | 1413..2244 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:45 Download gff for
BO01293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 1486..2317 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:47 Download gff for
BO01293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 1486..2317 | 15..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:47 Download gff for
BO01293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13162218..13162362 | 704..848 | 100 | -> | Minus |
| 2L | 13162420..13163106 | 15..703 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:45 Download gff for
BO01293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13162218..13162362 | 704..848 | 100 | -> | Minus |
| arm_2L | 13162420..13163106 | 15..703 | 99 | | Minus |
BO01293.5prime Sequence
906 bp (710 high quality bases) assembled on 2005-11-30
> BO01293.5prime
GAAGTTATCAGTCGACATGGAGCTGCCTTCAATGGTGGAGCGTTCGGGTG
ATCGCTTGGTGGTGCGCAGCTTGGTTAGTGGTGCTCCACTTTATCAGTCA
TCTATTGAGGGCGGAGCAGGTGCTGTGCTTCCTATGTCCCAAAGCGTGCA
GCCGCTAATAGGTCAGGACTTTTTGGAGCAACAACTGGAGCAGTATAAGG
CGAATAACTTTATGTTTCCACTATCGATGGCCGGGTTTGTTTCCGCAGAC
TCTGCACCACCGGGGGACTTGGCCAAGGAAAATATGGAGAACTCACTGCC
AGATGGTAATCCGTGCAACAACAACAACGACGATGAGCTGCCGCAGTGCA
AGATACGGCGTAACTACAGCTGCAACCAGTGCGCATTCTTCACGCAAAAT
CCGCGCAGTCATCTCTCGCATCTGCGGGACGTACATGGCGAGCGGATTGT
GATCAACGAGTGCAAGTTGTGCCTCTATGCCTCACGCCACTTCCAGAAGC
TGGTGCGGCACATGAAAATGGTGCACGGCTGTTCCGATGATGGCGGCGCA
GTGCAGGGATCAGGTGCTCAGCCGCGTGGTAAGCGAAATCTCTCCAGGGA
GGTGCGCAAGCGTCGTCTGGAGGAGAGCATTGAAGGCCAGGGTGCGACTG
GGCAATGCCTAGACCTCAGCGTGCTGCGCATGATCCAAAATGGACCGCCA
CTGGAGCAGCTGAAAGTAGAACTGCAGCAGCAAGAGATGCAGCTACTGGC
CAGTGTCCAGGCGTACAATCGACAGCAGGAGATGCTGCAGCTGCAGCAGA
TCGTCGAGAGCCACGACAACATATTCTCCATGGGCTACGAGTTCCAGACC
AAGTTATGCCGCCTAGCAAGCAGAGTCCCTGAAAATGGAACAGCAAAACA
GCAGCT
BO01293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-PA | 2244 | CG5204-RA | 1..840 | 17..856 | 4175 | 99.8 | Plus |
| CG9932-PA | 6516 | CG9932-RA | 478..518 | 491..531 | 205 | 100 | Plus |
| CG5204-PA | 2244 | CG5204-RA | 851..892 | 865..906 | 185 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-RA | 2364 | CG5204-RA | 73..965 | 16..906 | 4385 | 99.6 | Plus |
| CG9932-RE | 8986 | CG9932-RE | 1352..1545 | 338..531 | 445 | 82 | Plus |
| CG9932-RD | 7646 | CG9932-RD | 1352..1545 | 338..531 | 445 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13160805..13161697 | 16..906 | 4335 | 99.6 | Plus |
| 2L | 23513712 | 2L | 13030816..13031009 | 531..338 | 445 | 82 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:58:54 has no hits.
BO01293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:45 Download gff for
BO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-PA | 1..892 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:18 Download gff for
BO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-PA | 1..892 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:44 Download gff for
BO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 70..965 | 10..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:22 Download gff for
BO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 70..965 | 10..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:22 Download gff for
BO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13160802..13161697 | 10..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:44 Download gff for
BO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13160802..13161697 | 10..906 | 99 | | Plus |
BO01293.complete Sequence
2275 bp (2275 high quality bases) assembled on 2006-06-06
GenBank Submission: FJ629468
> BO01293.complete
GAAGTTATCAGTCGACATGGAGCTGCCTTCAATGGTGGAGCGTTCGGGTG
ATCGCTTGGTGGTGCGCAGCTTGGTTAGTGGTGCTCCACTTTATCAGTCA
TCTATTGAGGGCGGAGCAGGTGCTGTGCTTCCTATGTCCCAAAGCGTGCA
GCCGCTAATAGGTCAGGACTTTTTGGAGCAACAACTGGAGCAGTATAAGG
CGAATAACTTTATGTTTCCACTATCGATGGCCGGGTTTGTTTCCGCAGAC
TCTGCACCACCGGGGGACTTGGCCAAGGAAAATATGGAGAACTCACTGCC
AGATGGTAATCCGTGCAACAACAACAACGACGATGAGCTGCCGCAGTGCA
AGATACGGCGTAACTACAGCTGCAACCAGTGCGCATTCTTCACGCAAAAT
CCGCGCAGTCATCTCTCGCATCTGCGGGACGTACATGGCGAGCGGATTGT
GATCAACGAGTGCAAGTTGTGCCTCTATGCCTCACGCCACTTCCAGAAGC
TGGTGCGGCACATGAAAATGGTGCACGGCTGTTCCGATGATGGCGGCGCA
GTGCAGGGATCAGGTGCTCAGCCGCGTGGTAAGCGAAATCTCTCCAGGGA
GGTGCGCAAGCGTCGTCTGGAGGAGAGCATTGAAGGCCAGGGTGCGACTG
GGCAATGCCTAGACCTCAGCGTGCTGCGCATGATCCAAAATGGACCGCCA
CTGGAGCAGCTGAAAGTAGAACTGCAGCAGCAAGAGATGCAGCTACTGGC
CAGTGTCCAGGCGTACAATCGACAGCAGGAGATGCTGCAGCTGCAGCAGA
TCGTCGAGAGCCACGACAACATATTCTCCATGGCCTACGAGTTCCAGACC
AAGTTAATGCCGCCTAAGCAAGCAGAGTCCCTGAAATTGGAACAGCAAAA
CAGCAGCTCCGATTCCGAGGAGACTGCGAAGAGTCCTTCGCCGGATACCC
GTGAATTGGTGTCGGGTAAGGAGCAGTTTCAATGCCAGAAGTGTTCATAT
AGCACGCCCATTCGAGCCAGATTCAAAAAGCATGTGAAGTACCATTCCAT
GCCACTGATCAAGTGCAGCTCATGTGATTTTCACACACCCTACAAGTGGA
ATCTAGACCGGCACACCAAGAACCATGGTGCCAATGGCCATTTCAAGTGC
TCGTGCTGTGACTTTAGCACGGATATCAAACAATCGCTGACCATACACGA
ATCAAACCATCATGTGCCCATGCCGGTTCACCAAATGGGCAACCGAAGCC
GAGATGAGGCTGAGGATCTGGTGGATCAGCAGTCAAGTGGTTCCAGGAAA
CCAGAAACGTTTAAAAATGGTGGTGCTACCGTTGCATCGACAGAATCTCT
GCTTCCCCGGACTTCGGGGATCGTTTGTTCACACTGCCAGAAGCGGGTGG
GCAATGCCATGCAGTTGATCAACCATCTACAAGTGTGCACTTTGGCCTTG
CACAACACCACCCAACTGCAGGCTTCTATCAACGCGGAGGTGGATCTTCA
CGATGAGGACTTCCCCAATGCTCCCACTGATCTCAGTTATTGCGGCGTAG
AAACAGCTCCTGGCTATGGGGAGGTCACAGAAGTTTTGCCAGAGGAACCC
GAAGATTTGGCGCCATTGAAGAAGGTTTTTAAGTGTCCTCATTGCAGTTT
TTGGGCAGCCACTGCATCTCGCTTCCATGTCCACATCGTTGGTCATCTAA
ATAGGAAGCCCTTTGAATGCTCTCTGTGCGCCTATCGCTCCAACTGGCGC
TGGGACATCACCAAGCACATCCGTTTGAAGGCCCTCCGCGATAGATCCCA
TAACCAGGCCCAGGTGCTGATGAACGATGAGACCGGTAGGCGCAACTACG
CCAAGTACAATCAGTATCTGACTATGATGAAGGTAAGCGCCGAACAATTG
GCCGATTCGAAGGGAATGCGCACGGGTGAAATGATTGTGATGCCGCCGGA
GAAGCTAGACGACCATCATCCCATGGAAACGGAGGAGATCATCGAGATGG
TGGATAGTGCTCATTCGACCTCGGCACTGGATTTACGAAAGCCCAGGGAT
GACCAGACGGAGGACTTGGCAGGCAACAGCGATGAGCTGCCGCAAGAGGG
AGCCAAGACGGAGCCAAATTTAGAACCCTTGTCATTTAAATCATTGAATT
CATCACAAGTCATGCCAAAGCCCAAAGGGTCGCCTATGAATTTGACCAAG
ACAGATGGTGGTCAATCAGACGAAACGACATCCGCTGATGAATCCAATGA
AAGCGATGCAAGCTTTCTAGACCAT
BO01293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-RA | 2244 | CG5204-PA | 1..2241 | 17..2257 | 11205 | 100 | Plus |
| CG9932-RE | 6504 | CG9932-PE | 2417..2686 | 1617..1886 | 585 | 81.1 | Plus |
| CG9932-RD | 5967 | CG9932-PD | 2417..2686 | 1617..1886 | 585 | 81.1 | Plus |
| CG9932-RE | 6504 | CG9932-PE | 325..518 | 338..531 | 445 | 82 | Plus |
| CG9932-RE | 6504 | CG9932-PE | 1060..1250 | 1028..1218 | 235 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-RA | 2364 | CG5204-RA | 73..2314 | 16..2257 | 11210 | 100 | Plus |
| CG9932-RE | 8986 | CG9932-RE | 3444..3713 | 1617..1886 | 585 | 81.1 | Plus |
| CG9932-RD | 7646 | CG9932-RD | 3444..3713 | 1617..1886 | 585 | 81.1 | Plus |
| CG9932-RE | 8986 | CG9932-RE | 1352..1545 | 338..531 | 445 | 82 | Plus |
| CG9932-RE | 8986 | CG9932-RE | 2087..2277 | 1028..1218 | 235 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13160805..13162364 | 16..1575 | 7800 | 100 | Plus |
| 2L | 23513712 | 2L | 13162418..13163103 | 1572..2257 | 3430 | 100 | Plus |
| 2L | 23513712 | 2L | 13028236..13028505 | 1886..1617 | 585 | 81.1 | Minus |
| 2L | 23513712 | 2L | 13030816..13031009 | 531..338 | 445 | 82 | Minus |
| 2L | 23513712 | 2L | 13030084..13030274 | 1218..1028 | 235 | 74.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:53:18 has no hits.
BO01293.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:32 Download gff for
BO01293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 1..2244 | 17..2261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:53 Download gff for
BO01293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 70..2317 | 10..2261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:35 Download gff for
BO01293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 74..2314 | 17..2259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:32 Download gff for
BO01293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 70..2317 | 10..2261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:22 Download gff for
BO01293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5204-RA | 74..2314 | 17..2259 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:22 Download gff for
BO01293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13160806..13162362 | 17..1573 | 100 | -> | Plus |
| 2L | 13162420..13163103 | 1574..2259 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:35 Download gff for
BO01293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13160806..13162362 | 17..1573 | 100 | -> | Plus |
| arm_2L | 13162420..13163103 | 1574..2259 | 99 | | Plus |
BO01293.pep Sequence
Translation from 16 to 2275
> BO01293.pep
MELPSMVERSGDRLVVRSLVSGAPLYQSSIEGGAGAVLPMSQSVQPLIGQ
DFLEQQLEQYKANNFMFPLSMAGFVSADSAPPGDLAKENMENSLPDGNPC
NNNNDDELPQCKIRRNYSCNQCAFFTQNPRSHLSHLRDVHGERIVINECK
LCLYASRHFQKLVRHMKMVHGCSDDGGAVQGSGAQPRGKRNLSREVRKRR
LEESIEGQGATGQCLDLSVLRMIQNGPPLEQLKVELQQQEMQLLASVQAY
NRQQEMLQLQQIVESHDNIFSMAYEFQTKLMPPKQAESLKLEQQNSSSDS
EETAKSPSPDTRELVSGKEQFQCQKCSYSTPIRARFKKHVKYHSMPLIKC
SSCDFHTPYKWNLDRHTKNHGANGHFKCSCCDFSTDIKQSLTIHESNHHV
PMPVHQMGNRSRDEAEDLVDQQSSGSRKPETFKNGGATVASTESLLPRTS
GIVCSHCQKRVGNAMQLINHLQVCTLALHNTTQLQASINAEVDLHDEDFP
NAPTDLSYCGVETAPGYGEVTEVLPEEPEDLAPLKKVFKCPHCSFWAATA
SRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIRLKALRDRSHNQAQV
LMNDETGRRNYAKYNQYLTMMKVSAEQLADSKGMRTGEMIVMPPEKLDDH
HPMETEEIIEMVDSAHSTSALDLRKPRDDQTEDLAGNSDELPQEGAKTEP
NLEPLSFKSLNSSQVMPKPKGSPMNLTKTDGGQSDETTSADESNESDASF
LDH
BO01293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5204-PA | 747 | CG5204-PA | 1..747 | 1..747 | 3961 | 100 | Plus |
| CG9932-PC | 1899 | CG9932-PC | 1..424 | 1..409 | 907 | 47 | Plus |
| CG9932-PD | 1988 | CG9932-PD | 1..424 | 1..409 | 907 | 47 | Plus |
| CG9932-PE | 2167 | CG9932-PE | 1..424 | 1..409 | 907 | 47 | Plus |
| CG9932-PA | 2171 | CG9932-PA | 1..424 | 1..409 | 907 | 47 | Plus |
| CG9932-PC | 1899 | CG9932-PC | 675..914 | 449..639 | 553 | 48.1 | Plus |
| CG9932-PD | 1988 | CG9932-PD | 675..910 | 449..639 | 547 | 47.9 | Plus |
| CG9932-PE | 2167 | CG9932-PE | 675..910 | 449..639 | 547 | 47.9 | Plus |
