Clone BO01296 Report

Search the DGRC for BO01296

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptE(z)-RA
Protein status:BO01296.pep: validated full length
Sequenced Size:2314

Clone Sequence Records

BO01296.3prime Sequence

805 bp (568 high quality bases) assembled on 2005-11-30

> BO01296.3prime
ATGGTCTAGAAAGCTTGCAACAATTTCCATTTCACGCTCTATGCCCACGA
ACTTCAGCTGCTCCGTGGGTCCGTATCTGTAGTCAAAGAATAGCTCTTCG
CCGGGCTGAATGGCCCGCTTGGCAAAGATGCCGATGCGATGATCGCCGGT
GACCATCATAACCTTGGCATAGCAATTGGGATTAATGGAATGATTGGCAA
ACCGAATCTTGTTGCCCTTCCGAGTGGCATCCACAACAAAATCGTTGTTC
AGATTGAAAAGAAATGAGCACATGTACTTGTCGTAAACCTTGCCACGGCG
ATCGGCTTCATCTTGGGATATGATCTCGCCACAATATTCCGAAATGAACT
CATTCTTTTGCGCACCCTCCTTAAGAAAGATGCCCCAGCCGGCGATGTCA
GACGGAGCCATGAGCAGGTGCTTGTGCAGTCCTCGCTGCACGCACACGTT
CTTGCACGTGATCTTGGTCAGCTTAAACTGATCCGCTCCGCAGGCCTGGC
ACAGATCGGGATCACACTCGCGCACTGCCAGATAGCAAGGACACTGCTTC
GTATTGCACTGAGCCTTGCAGCGACAGCCGGGGAAACGATTCTGGCAATC
GCTGCTGCAGTTGCAGAACTTTTCGCAGAAGTTTTGTGTCTGAATGCAGG
AGCAGTTCATGTCGCATGGATGTCCGGGATGGTCGCAGGGCGTGTAGTTG
TACACGTGATTCGAGGATGAGTCCTTCTTTAGCTGAATCTTACGACAGTG
CAGCGACCACAGACGTTGCTTCTTCTTTCTCTTGCGCGGAGGTGTGAAGT
CCTGT

BO01296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6502-PA 2283 E(z)-RA 1494..2280 805..19 3885 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-RC 2479 CG6502-RC 1627..2413 805..19 3905 99.7 Minus
E(z)-RB 2464 CG6502-RB 1612..2398 805..19 3905 99.7 Minus
E(z)-RA 2650 CG6502-RA 1798..2584 805..19 3905 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10634641..10635047 19..425 2035 100 Plus
3L 28110227 3L 10635116..10635495 426..805 1870 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 00:23:53 has no hits.

BO01296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:49 Download gff for BO01296.3prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-PA 1494..2283 16..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:24 Download gff for BO01296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6502-PA 1494..2283 16..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:42 Download gff for BO01296.3prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 1798..2584 19..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:54 Download gff for BO01296.3prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 1798..2584 19..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:54 Download gff for BO01296.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10634641..10635047 19..425 100 <- Plus
3L 10635116..10635495 426..805 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:42 Download gff for BO01296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10627741..10628147 19..425 100 <- Plus
arm_3L 10628216..10628595 426..805 99   Plus

BO01296.5prime Sequence

293 bp (272 high quality bases) assembled on 2005-11-30

> BO01296.5prime
GAAGTTATCAGTCGACATGAATAGCACTAAAGTGCCGCCCGAGTGGAAGA
GGCGTGTCAAGTCGGAGTACATCAAAATCAGGCAGCAGAAGCGCTACAAA
CGTGCCGACGAGATCAAGGAGGCGTGGATAAGAAACTGGGACGAGCACAA
CCACAATGTACAGGATCTGTACTGCGAGTCGAAGGTTTGGCAGGCTAAAC
CCTACGATCCGCCGCATGTGGACTGTGTGAAGCGGGCGGAGGTGACTAGC
TACAATGGCATTCCCAGCGGTCCGCAAAAGGTGCCCATTTGCG

BO01296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6502-PA 2283 E(z)-RA 1..277 17..293 1385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-RC 2479 CG6502-RC 119..395 17..293 1385 100 Plus
E(z)-RB 2464 CG6502-RB 119..395 17..293 1385 100 Plus
E(z)-RA 2650 CG6502-RA 305..581 17..293 1385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10637423..10637578 293..138 780 100 Minus
3L 28110227 3L 10637639..10637761 139..17 615 100 Minus
Blast to na_te.dros performed on 2015-02-04 18:50:32 has no hits.

BO01296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:50 Download gff for BO01296.5prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-PA 1..277 17..293 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:25 Download gff for BO01296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6502-PA 1..277 17..293 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:48 Download gff for BO01296.5prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 298..581 10..293 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:55 Download gff for BO01296.5prime
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 298..581 10..293 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:55 Download gff for BO01296.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10637423..10637577 139..293 100 <- Minus
3L 10637640..10637768 10..138 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:48 Download gff for BO01296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10630523..10630677 139..293 100 <- Minus
arm_3L 10630740..10630868 10..138 96   Minus

BO01296.complete Sequence

2314 bp assembled on 2007-10-05

GenBank Submission: FJ629469

> BO01296.complete
GAAGTTATCAGTCGACATGAATAGCACTAAAGTGCCGCCCGAGTGGAAGA
GGCGTGTCAAGTCGGAGTACATCAAAATCAGGCAGCAGAAGCGCTACAAA
CGTGCCGACGAGATCAAGGAGGCGTGGATAAGAAACTGGGACGAGCACAA
CCACAATGTACAGGATCTGTACTGCGAGTCGAAGGTTTGGCAGGCTAAAC
CCTACGATCCGCCGCATGTGGACTGTGTGAAGCGGGCGGAGGTGACTAGC
TACAATGGCATTCCCAGCGGTCCGCAAAAGGTGCCCATTTGCGTGATCAA
CGCGGTCACTCCCATACCCACCATGTACACGTGGGCACCAACACAGCAGA
ACTTCATGGTGGAGGATGAGACGGTGCTGCACAATATACCCTATATGGGC
GACGAGGTCCTCGATAAGGATGGCAAGTTCATAGAGGAACTGATCAAAAA
CTACGATGGCAAGGTTCACGGCGACAAGGATCCCTCGTTCATGGACGATG
CCATCTTCGTAGAACTGGTGCACGCCCTTATGCGCTCCTACAGCAAGGAA
CTGGAGGAAGCCGCTCCGGGTACAGCGACTGCCATTAAAACAGAGACGTT
GGCGAAATCAAAACAGGGCGAAGATGATGGGGTAGTTGATGTTGACGCAG
ATGGTGAATCTCCCATGAAGCTTGAGAAAACCGACAGCAAAGGGGATCTG
ACTGAAGTTGAGAAGAAGGAAACTGAAGAACCGCTGGAGACTGAAGATGC
GGATGTTAAGCCCGATGTGGAAGAAGTCAAGGACAAGCTGCCCTTCCCTG
CGCCCATTATTTTTCAGGCCATCAGCGCTAACTTTCCAGACAAGGGCACC
GCGCAAGAGCTCAAAGAAAAGTACATTGAGCTTACGGAGCACCAGGATCC
GGAGCGCCCACAGGAGTGCACACCCAACATTGACGGCATCAAGGCCGAGA
GCGTTTCCCGGGAAAGGACTATGCACTCCTTTCACACGCTCTTCTGTCGT
CGTTGCTTCAAATACGACTGCTTCCTGCACCGCTTGCAAGGACATGCGGG
TCCCAATCTCCAGAAGCGTCGCTATCCGGAACTGAAGCCTTTCGCCGAAC
CTTGCAGCAACTCCTGCTACATGTTGATCGATGGCATGAAGGAAAAGCTG
GCGGCCGATAGCAAGACACCTCCCATTGATTCCTGCAATGAGGCCAGCTC
CGAGGACAGTAATGACAGCAACAGTCAGTTTAGCAACAAGGACTTTAATC
ATGAGAATAGCAAGGATAATGGCCTGACTGTAAATAGCGCCGCTGTGGCT
GAGATCAACTCCATTATGGCTGGCATGATGAACATCACCAGTACGCAGTG
CGTTTGGACAGGCGCTGACCAAGCACTTTATCGGGTCTTGCATAAAGTGT
ATTTAAAGAACTACTGCGCGATTGCGCACAACATGCTGACCAAGACCTGT
CGTCAGGTGTACGAGTTTGCCCAGAAGGAGGATGCTGAGTTTAGCTTCGA
GGATTTGCGACAGGACTTCACACCTCCGCGCAAGAAGAAGAAGAAGCAAC
GTCTGTGGTCGCTGCACTGTCGTAAGATTCAGCTAAAGAAGGACTCATCC
TCGAATCACGTGTACAACTACACGCCCTGCGACCATCCCGGACATCCATG
CGACATGAACTGCTCCTGCATTCAGACACAAAACTTCTGCGAAAAGTTCT
GCAACTGCAGCAGCGATTGCCAGAATCGTTTCCCCGGCTGTCGCTGCAAG
GCTCAGTGCAATACGAAGCAGTGTCCTTGCTATCTGGCAGTGCGCGAGTG
TGATCCCGATCTGTGCCAGGCCTGCGGAGCGGATCAGTTTAAGCTGACCA
AGATCACGTGCAAGAACGTGTGCGTGCAGCGAGGACTGCACAAGCACCTG
CTCATGGCTCCGTCTGACATCGCCGGCTGGGGCATCTTTCTTAAGGAGGG
TGCGCAAAAGAATGAGTTCATTTCGGAATATTGTGGCGAGATCATATCCC
AAGATGAAGCCGATCGCCGTGGCAAGGTTTACGACAAGTACATGTGCTCA
TTTCTTTTCAATCTGAACAACGATTTTGTTGTGGATGCCACTCGGAAGGG
CAACAAGATTCGGTTTGCCAATCATTCCATTAATCCCAATTGCTATGCCA
AGGTTATGATGGTCACCGGCGATCATCGCATCGGCATCTTTGCCAAGCGG
GCCATTCAGCCCGGCGAAGAGCTATTCTTTGACTACAGATACGGACCCAC
GGAGCAGCTGAAGTTCGTGGGCATAGAGCGTGAAATGGAAATTGTTGCAA
GCTTTCTAGACCAT

BO01296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-RB 2283 CG6502-PB 1..2280 17..2296 11400 100 Plus
E(z)-RA 2283 CG6502-PA 1..2280 17..2296 11400 100 Plus
E(z)-RC 2298 CG6502-PC 1..2295 17..2296 11215 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-RB 2464 CG6502-RB 119..2398 17..2296 11400 100 Plus
E(z)-RA 2650 CG6502-RA 305..2584 17..2296 11400 100 Plus
E(z)-RC 2479 CG6502-RC 119..2413 17..2296 11215 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10636843..10637578 873..138 3680 100 Minus
3L 28110227 3L 10635116..10635686 1889..1319 2855 100 Minus
3L 28110227 3L 10634641..10635047 2296..1890 2035 100 Minus
3L 28110227 3L 10635748..10635937 1319..1130 950 100 Minus
3L 28110227 3L 10636623..10636784 1032..871 810 100 Minus
3L 28110227 3L 10637639..10637761 139..17 615 100 Minus
3L 28110227 3L 10635995..10636093 1130..1032 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:56:55 has no hits.

BO01296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:33 Download gff for BO01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RB 1..2283 17..2299 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:59 Download gff for BO01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RB 111..2397 10..2296 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:23 Download gff for BO01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 305..2584 17..2298 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:33 Download gff for BO01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RB 111..2397 10..2296 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:34 Download gff for BO01296.complete
Subject Subject Range Query Range Percent Splice Strand
E(z)-RA 305..2584 17..2298 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:34 Download gff for BO01296.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10634638..10635047 1890..2298 99 <- Minus
3L 10635116..10635685 1320..1889 100 <- Minus
3L 10635748..10635937 1130..1319 100 <- Minus
3L 10635996..10636093 1032..1129 100 <- Minus
3L 10636624..10636784 871..1031 100 <- Minus
3L 10636846..10637577 139..870 100 <- Minus
3L 10637640..10637761 17..138 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:23 Download gff for BO01296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10627738..10628147 1890..2298 99 <- Minus
arm_3L 10628216..10628785 1320..1889 100 <- Minus
arm_3L 10628848..10629037 1130..1319 100 <- Minus
arm_3L 10629096..10629193 1032..1129 100 <- Minus
arm_3L 10629724..10629884 871..1031 100 <- Minus
arm_3L 10629946..10630677 139..870 100 <- Minus
arm_3L 10630740..10630861 17..138 100   Minus

BO01296.pep Sequence

Translation from 16 to 2314

> BO01296.pep
MNSTKVPPEWKRRVKSEYIKIRQQKRYKRADEIKEAWIRNWDEHNHNVQD
LYCESKVWQAKPYDPPHVDCVKRAEVTSYNGIPSGPQKVPICVINAVTPI
PTMYTWAPTQQNFMVEDETVLHNIPYMGDEVLDKDGKFIEELIKNYDGKV
HGDKDPSFMDDAIFVELVHALMRSYSKELEEAAPGTATAIKTETLAKSKQ
GEDDGVVDVDADGESPMKLEKTDSKGDLTEVEKKETEEPLETEDADVKPD
VEEVKDKLPFPAPIIFQAISANFPDKGTAQELKEKYIELTEHQDPERPQE
CTPNIDGIKAESVSRERTMHSFHTLFCRRCFKYDCFLHRLQGHAGPNLQK
RRYPELKPFAEPCSNSCYMLIDGMKEKLAADSKTPPIDSCNEASSEDSND
SNSQFSNKDFNHENSKDNGLTVNSAAVAEINSIMAGMMNITSTQCVWTGA
DQALYRVLHKVYLKNYCAIAHNMLTKTCRQVYEFAQKEDAEFSFEDLRQD
FTPPRKKKKKQRLWSLHCRKIQLKKDSSSNHVYNYTPCDHPGHPCDMNCS
CIQTQNFCEKFCNCSSDCQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLC
QACGADQFKLTKITCKNVCVQRGLHKHLLMAPSDIAGWGIFLKEGAQKNE
FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRF
ANHSINPNCYAKVMMVTGDHRIGIFAKRAIQPGEELFFDYRYGPTEQLKF
VGIEREMEIVASFLDH

BO01296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
E(z)-PB 760 CG6502-PB 1..760 1..760 4140 100 Plus
E(z)-PA 760 CG6502-PA 1..760 1..760 4140 100 Plus
E(z)-PC 765 CG6502-PC 1..765 1..760 4124 99.3 Plus
Su(var)3-9-PA 635 CG43664-PA 410..621 547..759 235 30 Plus
Set1-PI 1641 CG40351-PI 1502..1626 626..749 230 39.7 Plus