Clone Sequence Records
BO01303.3prime Sequence
867 bp (716 high quality bases) assembled on 2005-11-30
> BO01303.3prime
ATGGTCTAGAAAGCTTGCCTCCATTCGCCGGGCCTCGGCTTGCATGGTCT
GCAGTACGATGTGTGGCACCAGGTGTGTGGAGGCGTAGTTCAGGGGCACC
GTGGCCAATGGCGCTGAGCCGTCAGATGGGAAGTTGAGCTCCTGTGCCAT
GGGCATGTCCCTGTCGATGACATCCTGGGCGATCAAGGTCTTGGTCTCCT
CGTACTCCATGCCCGCCTCCGGCTTAGCGCCCATCAAGAGTTTTCCGCGC
TGCACGCCCATGTACTGGGTGGCCTTGGCATTCAAAGGCAACTGGCCGCA
GGTATCGGCATGCACCTTGCGATGTGCCTGCAAGTTGGAGATGCAAGTGA
AGCGCTTGCCGCAGTTATTGCACAGGAAACGCTTAATGCCCGTGTGCACG
GTCATGTGGGTGAGCAGACTCTCCCTGTACGGATACTCCTTGGGACACAG
GTGGCACTTGTACGGCTTGTAGTCCGTGTGGCGCGTCTTCAAGTGCGACT
TGTATTGCGCCTTCACCTTGAATGTTTTGCCGCACTTATCGCACTGGTAC
GGAGTGTCTGCCTTGTGAAGGAGCATGTGCGTCTTGAGAATACCAGCGGT
GGACAAATGTTTGCCGCAAACGCTGCAGCCGTAGAGCGGTAGACGGCCGC
AGTCAGAACGAACGTGGTCAGAGAGCGATGTGCGTCCGGTGAACTTCTTG
CCGCACTTGTCGCAGATGAGGTTGCGCTGCTGGCTGCGCGGCTCCTTCTT
CGAGTGGAAATTGCGTTCGTGGTTCTTGAGGCTGTCGTGTCCGGTCATGT
ACTTGTCGCATTTTTCGCAGTAGAGCAGTTCCTTGTGCTGGGCCCTAGCA
TGCTCAGTGGCCTGTTC
BO01303.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3998-PA | 2334 | zf30C-RA | 1483..2331 | 867..19 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2976 | CG3998-RA | 1891..2739 | 867..19 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9761564..9762138 | 593..19 | 2875 | 100 | Minus |
| 2L | 23513712 | 2L | 9761225..9761499 | 867..593 | 1375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:31:58 has no hits.
BO01303.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:55 Download gff for
BO01303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-PA | 1483..2334 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:34 Download gff for
BO01303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3998-PA | 1483..2334 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:34:15 Download gff for
BO01303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 1891..2745 | 11..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:50 Download gff for
BO01303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 1891..2745 | 11..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:50 Download gff for
BO01303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9761225..9761499 | 593..867 | 100 | -> | Minus |
| 2L | 9761565..9762144 | 11..592 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:34:15 Download gff for
BO01303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9761225..9761499 | 593..867 | 100 | -> | Minus |
| arm_2L | 9761565..9762144 | 11..592 | 99 | | Minus |
BO01303.5prime Sequence
790 bp (789 high quality bases) assembled on 2005-11-30
> BO01303.5prime
GAAGTTATCAGTCGACATGGAAACCGAGTCGATGGCTCCAAGCAGCAGTG
CGGCGGCTGCAGCCACCAAGCTCCTGGTGGAGATCACCACCGACGGAATA
CCCAAGCTGCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTAGCCGG
ATATGTGAAGCACGTAAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCC
GTCACTGCGATGCTCGGTTTTGCCACGAGGAGGAGCTCACCCAGCATGCA
AAGGATGAGCACGGAGTCACTGGCGCGGTAGCTGGACAGGAGCGAAAGCC
TTTCGTTTGTGAAAAGTGCGGCGCGGAGTACAAGTACCAGGAGGCATACC
GTCGCCACTGCAGGACCAAGTGTGGCGAGGAAAAGCTACCCAGGGAGGAA
TCCCGACCAATGGAGTGCAAGTGCTGCTACACCCGCTTCTCTAGCGCCTC
TAACCTATCCAAGCATCGACGCAGTCGTCCCGACACCTGTGGACAGCCGG
AATACGATTCGCCCGGTTCATCCGATGGGATGAAGAAACATAAGGCCTTC
CGCAAGAAGGACAGAAACAGGGACTCTGATGATGAAGATACCACCAGCGA
AGAATCGGAAGATAGCGATGATGACATTCCTCTGGCCAGTCGTCTGAAGA
CGAAGCTCAAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCC
GACTTCGAACCCAACAACAGTGAGGACGATGCGGATGCATCCGGATTCCA
GCTTCCTCCGCCGGCTATGGTCAAGGTGGAGGCCTTCGAC
BO01303.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3998-PA | 2334 | zf30C-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2976 | CG3998-RA | 405..1182 | 13..790 | 3875 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9760120..9760516 | 394..790 | 1985 | 100 | Plus |
| 2L | 23513712 | 2L | 9759679..9760054 | 20..395 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:13:34 has no hits.
BO01303.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:27:56 Download gff for
BO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:35 Download gff for
BO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3998-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:11 Download gff for
BO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 397..1182 | 6..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:48 Download gff for
BO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 397..1182 | 6..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:48 Download gff for
BO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9759674..9760053 | 11..394 | 98 | -> | Plus |
| 2L | 9760121..9760516 | 395..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:11 Download gff for
BO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9759674..9760053 | 11..394 | 98 | -> | Plus |
| arm_2L | 9760121..9760516 | 395..790 | 100 | | Plus |
BO01303.complete Sequence
2365 bp (2365 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629470
> BO01303.complete
GAAGTTATCAGTCGACATGGAAACCGAGTCGATGGCTCCAAGCAGCAGTG
CGGCGGCTGCAGCCACCAAGCTCCTGGTGGAGATCACCACCGACGGAATA
CCCAAGCTGCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTAGCCGG
ATATGTGAAGCACGTAAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCC
GTCACTGCGATGCTCGGTTTTGCCACGAGGAGGAGCTCACCCAGCATGCA
AAGGATGAGCACGGAGTCACTGGCGCGGTAGCTGGACAGGAGCGAAAGCC
TTTCGTTTGTGAAAAGTGCGGCGCGGAGTACAAGTACCAGGAGGCATACC
GTCGCCACTGCAGGACCAAGTGTGGCGAGGAAAAGCTACCCAGGGAGGAA
TCCCGACCAATGGAGTGCAAGTGCTGCTACACCCGCTTCTCTAGCGCCTC
TAACCTATCCAAGCATCGACGCAGTCGTCCCGACACCTGTGGACAGCCGG
AATACGATTCGCCCGGTTCATCCGATGGGATGAAGAAACATAAGGCCTTC
CGCAAGAAGGACAGAAACAGGGACTCTGATGATGAAGATACCACCAGCGA
AGAATCGGAAGATAGCGATGATGACATTCCTCTGGCCAGTCGTCTGAAGA
CGAAGCTCAAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCC
GACTTCGAACCCAACAACAGTGAGGACGATGCGGATGCATCCGGATTCCA
GCTTCCTCCGCCGGCTATGGTCAAGGTGGAGGCCTTCGACGAAGAAGATT
TCGAGTACCAGGACGCCAGCATGTATGTGAAGACCGAAAGCACCGATATC
TTTAGCAACGAAAAGGATAAGCTGCTGGATGTGCTGCTCAATGAGGGTGA
TGGCTTAAAGCCCTTTGAGAGCCTAAAGGTGGAACAGGGCGCTGGTATAC
TAGACGAAATCGCGGCCGTGCCGCTAGTGGAGGTTGCGGAAGAAGATGTC
TTAGAACTGAGGGGTCATCAAATGGAAAAACCTCCCGGACCAAGAAAGCG
GGGCAGACCGCCAAAGGAAAAGATACCTGTGGTCAAGAGAAAGTATCGCA
AACGAAACGCACCTAGATCGCCCTCGCCTGACGATTCATCGGGTACACCA
AAACGCGTAGCTAAGATCAGCAAAAAGGAGCTAAAGGAGCGCCTTAAGAT
GATCAACAAGATGGAAAAATCCTGGAAGTGTCCTCACTGCGTAAAAATCT
ACCACATCCGCAAGCCCTACGAAAAGCATTTGCGCGACGACCACAAGTTA
AATGAGGCGGAAATGAAAGAGATCTTTAAGGACGTGGACGTCCATGCTAA
GCTGGACGAGGAAGTCTTTAAGTGTCCCATATGCAGCAAGATCTATTTGG
TGGAGAAGCGCTTGGTCACCCACATGAAGGTGCATGGCGAAGATGGCAAG
CTGACTTTCAAGTGCCCATGCTACTGCAACCTCTTCTTCGCCACCAAGGA
ACAGGCCACTGAGCATGCTAGGGCCCAGCACAAGGAACTGCTCTACTGCG
AAAAATGCGACAAGTACATGACCGGACACGACAGCCTCAAGAACCACGAA
CGCAATTTCCACTCGAAGAAGGAGCCGCGCAGCCAGCAGCGCAACCTCAT
CTGCGACAAGTGCGGCAAGAAGTTCACCGGACGCACATCGCTCTCTGACC
ACGTTCGTTCTGACTGCGGCCGTCTACCGCTCTACGGCTGCAGCGTTTGC
GGCAAACATTTGTCCACCGCTGGTATTCTCAAGACGCACATGCTCCTTCA
CAAGGCAGACACTCCGTACCAGTGCGATAAGTGCGGCAAAACATTCAAGG
TGAAGGCGCAATACAAGTCGCACTTGAAGACGCGCCACACGGACTACAAG
CCGTACAAGTGCCACCTGTGTCCCAAGGAGTATCCGTACAGGGAGAGTCT
GCTCACCCACATGACCGTGCACACGGGCATTAAGCGTTTCCTGTGCAATA
ACTGCGGCAAGCGCTTCACTTGCATCTCCAACTTGCAGGCACATCGCAAG
GTGCATGCCGATACCTGCGGCCAGTTGCCTTTGAATGCCAAGGCCACCCA
GTACATGGGCGTGCAGCGCGGAAAACTCTTGATGGGCGCTAAGCCGGAGG
CGGGCATGGAGTACGAGGAGACCAAGACCTTGATCGCCCAGGATGTCATC
GACAGGGACATGCCCATGGCACAGGAGCTCAACTTCCCATCTGACGGCTC
AGCGCCATTGGCCACGGTGCCCCTGAACTACGCCTCCACACACCTGGTGC
CACACATCGTACTGCAGACCATGCAAGCCGAGGCCCGGCGAATGGAGGCA
AGCTTTCTAGACCAT
BO01303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2334 | CG3998-PA | 1..2331 | 17..2347 | 11655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2976 | CG3998-RA | 405..2739 | 13..2347 | 11660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9760120..9761499 | 394..1773 | 6900 | 100 | Plus |
| 2L | 23513712 | 2L | 9761564..9762138 | 1773..2347 | 2875 | 100 | Plus |
| 2L | 23513712 | 2L | 9759679..9760054 | 20..395 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:37:02 has no hits.
BO01303.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:58 Download gff for
BO01303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 1..2334 | 17..2351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:17 Download gff for
BO01303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 401..2749 | 6..2355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:39 Download gff for
BO01303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 409..2739 | 17..2349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:58 Download gff for
BO01303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 401..2749 | 6..2355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:01 Download gff for
BO01303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 409..2739 | 17..2349 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:01 Download gff for
BO01303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9759678..9760053 | 17..394 | 99 | -> | Plus |
| 2L | 9760121..9761499 | 395..1773 | 100 | -> | Plus |
| 2L | 9761565..9762138 | 1774..2349 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:39 Download gff for
BO01303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9759678..9760053 | 17..394 | 99 | -> | Plus |
| arm_2L | 9760121..9761499 | 395..1773 | 100 | -> | Plus |
| arm_2L | 9761565..9762138 | 1774..2349 | 99 | | Plus |
BO01303.pep Sequence
Translation from 16 to 2365
> BO01303.pep
METESMAPSSSAAAAATKLLVEITTDGIPKLHCPVCNKALVSLAGYVKHV
KKHQPPGGFECRHCDARFCHEEELTQHAKDEHGVTGAVAGQERKPFVCEK
CGAEYKYQEAYRRHCRTKCGEEKLPREESRPMECKCCYTRFSSASNLSKH
RRSRPDTCGQPEYDSPGSSDGMKKHKAFRKKDRNRDSDDEDTTSEESEDS
DDDIPLASRLKTKLKQESQNSDSGDECPDFEPNNSEDDADASGFQLPPPA
MVKVEAFDEEDFEYQDASMYVKTESTDIFSNEKDKLLDVLLNEGDGLKPF
ESLKVEQGAGILDEIAAVPLVEVAEEDVLELRGHQMEKPPGPRKRGRPPK
EKIPVVKRKYRKRNAPRSPSPDDSSGTPKRVAKISKKELKERLKMINKME
KSWKCPHCVKIYHIRKPYEKHLRDDHKLNEAEMKEIFKDVDVHAKLDEEV
FKCPICSKIYLVEKRLVTHMKVHGEDGKLTFKCPCYCNLFFATKEQATEH
ARAQHKELLYCEKCDKYMTGHDSLKNHERNFHSKKEPRSQQRNLICDKCG
KKFTGRTSLSDHVRSDCGRLPLYGCSVCGKHLSTAGILKTHMLLHKADTP
YQCDKCGKTFKVKAQYKSHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMT
VHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQ
RGKLLMGAKPEAGMEYEETKTLIAQDVIDRDMPMAQELNFPSDGSAPLAT
VPLNYASTHLVPHIVLQTMQAEARRMEASFLDH
BO01303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-PA | 777 | CG3998-PA | 1..777 | 1..777 | 4204 | 100 | Plus |
| crol-PH | 686 | CG14938-PH | 184..459 | 404..680 | 343 | 30.7 | Plus |
| crol-PB | 891 | CG14938-PB | 442..664 | 448..680 | 339 | 33.2 | Plus |
| CG11696-PA | 664 | CG11696-PA | 105..583 | 184..678 | 337 | 25.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 61..382 | 352..680 | 332 | 27 | Plus |
| CG5245-PA | 501 | CG5245-PA | 190..466 | 400..680 | 311 | 29.2 | Plus |
| crol-PH | 686 | CG14938-PH | 187..480 | 355..669 | 309 | 27.9 | Plus |
| CG5245-PA | 501 | CG5245-PA | 204..490 | 385..676 | 308 | 28.3 | Plus |
| crol-PH | 686 | CG14938-PH | 184..403 | 452..681 | 298 | 29.7 | Plus |
| crol-PH | 686 | CG14938-PH | 190..444 | 419..686 | 292 | 28.9 | Plus |
| crol-PH | 686 | CG14938-PH | 293..493 | 400..625 | 230 | 29.7 | Plus |
| crol-PH | 686 | CG14938-PH | 165..290 | 554..680 | 205 | 32.3 | Plus |
