Clone Sequence Records
BO01307.3prime Sequence
867 bp (838 high quality bases) assembled on 2005-11-30
> BO01307.3prime
ATGGTCTAGAAAGCTTGCCGTGTATAGTCGGATGGTACTGTCCGCGCCCG
TGGAGAAGACCCATGGCTGCACCGGATGCCAGTTAACATCCAGCACACCA
AACTCATCGCGTTTCTCGTGTGTTTGCAGCTTCTTGAGAGGCACAATCAA
AGGGTTTTGCAGCAGGTCATTATAGACCATGCCATGGGAGACGATCACAG
CCTGGTCATCGCTGCCGGAAGCAAAGAGCGGATATCGAAGATGGAAAGCA
ACACTGCGAACTGCATTGCGATGGAGTCGCATGGTCTGGTAGGGCTTTGT
GGACAGATCCAAATCGAACCAGAGCATCTTTTTGTCATAGGTGGACACCA
GCAGATTGTCGCCCTTGGGATGAATAGACATGCCCGATATCCATTTGGAG
TTGGTCAGCAGCTTCTTGACAAGCTCTTGTTTGACCAGATCATAAATGCG
AATGTTGTGTTGCGTCGCCACAAAGAAGCAGGGCTTCACCGGATGGAAGA
GCACGAATTGGATGAGACCCTTGCTCTTGGAGAATGGAATCTGTGAGCGC
CGCTTGGACAACTGATGAATTAAAGCCGAGCGGTTAGCACCTTCGGGCAT
CACTGTGGCCAAGTAGTCACCACGACCGTGCCAGGTCACCTGTCGGATGG
GTTTGAAGTGGGTAATCACTACGCGGACGCCCTTCTCCTGCTCATCAGCT
TCCGCATTTGACCATTGCACCGCCGTCTTGATGCGTTCACTTTCAATGAC
ATCCTGACTGGGCGCCTCAGCCAAGAGATCGTCGGTCTTCTTCACCAGCA
CCTTATCGCCCACTTTAGGATTGACGAGCAGCAAGCGATTGCCAGTGGCC
ACCGCAATAATAGACAG
BO01307.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-PA | 2355 | CG5033-RA | 1504..2352 | 867..19 | 4245 | 100 | Minus |
| CG5033-PB | 1854 | CG5033-RB | 1003..1851 | 867..19 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2514 | CG5033-RA | 1572..2420 | 867..19 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17791383..17791784 | 867..466 | 2010 | 100 | Minus |
| 2R | 25286936 | 2R | 17791844..17792140 | 466..170 | 1485 | 100 | Minus |
| 2R | 25286936 | 2R | 17792204..17792354 | 169..19 | 755 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 16:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 3351..3392 | 710..669 | 111 | 73.8 | Minus |
BO01307.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:28:01 Download gff for
BO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-PA | 1504..2355 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:41 Download gff for
BO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-PB | 1003..1854 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:10 Download gff for
BO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 1572..2426 | 10..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:06 Download gff for
BO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 1572..2426 | 10..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:06 Download gff for
BO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17791383..17791784 | 466..867 | 100 | -> | Minus |
| 2R | 17791845..17792140 | 170..465 | 100 | -> | Minus |
| 2R | 17792204..17792360 | 10..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:10 Download gff for
BO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13679709..13679865 | 10..169 | 97 | | Minus |
| arm_2R | 13678888..13679289 | 466..867 | 100 | -> | Minus |
| arm_2R | 13679350..13679645 | 170..465 | 100 | -> | Minus |
BO01307.5prime Sequence
845 bp (781 high quality bases) assembled on 2005-11-30
> BO01307.5prime
GAAGTTATCAGTCGACATGACCAAAAAACTAGCTCTGAAACGCAGAGGAA
AGGATTCGGAACCCACAAATGAAGTGGTGGCCAGTTCCGAGGCTTCCGAA
AACGAGGAGGAGGAGGAGGACCTGCTGCAAGCTGTAAAAGATCCCGGCGA
AGATTCAACAGATGACGAGGGCATAGACCAGGAATACCACTCGGATTCCA
GTGAGGAACTGCAGTTCGAGAGCGATGAGGAGGGCAACTACTTGGGCAGA
AAGCAATCTTCATCAGCTGAGGAAGATGAAGAAAGTAGTGATGAAGAGGA
TAATGAAGAGGAGGAAAGCACTGATGGAGAGGAAGTGGAAGATGAGGAGA
AGGATTCCAAGTCAAAGCAAACAGACGATAAGCCCAGTGGAAGCGGTGCC
GCGTCTAAAAAAGCCCTTACAGCAGAGCTCCCGAAACGGGATAGCTCGAA
GCCTGAGTATCAGGATTCAGATACCTCCGACGAGGAGGACATAAGAAATA
CTGTAGGCAACATACCCATGCACTGGTACGACGAATACAAGCACATCGGT
TACGACTGGGATGCCAAGAAGATTATTAAACCACCACAAGGAGATCAAAT
TGATGAGTTCCTGCGTAAGATCGAGGACCCAGACTTTTGGCGTACCGTCA
AGGATCCACTTACCGGTCAGGATGTGCGCCTAACAGACGAGGACATTGCT
CTGATCAAGCGCATCGTTTCGGGTCGCATACCCAACAAGGATCACGAAGA
GTATGAGCCCTGGATCGAATGGTTCACATCGGAGGTGGAAAAGATGCCCA
TCAAGAACGTACCCGAACACAAACGCTCTTTCCTGCCCCTCAGTT
BO01307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-PA | 2355 | CG5033-RA | 1..822 | 17..838 | 4085 | 99.8 | Plus |
| CG5033-PB | 1854 | CG5033-RB | 1..321 | 518..838 | 1580 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2514 | CG5033-RA | 69..896 | 17..845 | 4105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17789917..17790638 | 117..838 | 3595 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17789747..17789849 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:08:53 has no hits.
BO01307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:28:02 Download gff for
BO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-PA | 1..828 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:43 Download gff for
BO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-PA | 1..828 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:30 Download gff for
BO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 64..896 | 12..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:43 Download gff for
BO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 64..896 | 12..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:43 Download gff for
BO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17789742..17789848 | 12..118 | 98 | -> | Plus |
| 2R | 17789919..17790644 | 119..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:30 Download gff for
BO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13677247..13677353 | 12..118 | 98 | -> | Plus |
| arm_2R | 13677424..13678149 | 119..845 | 99 | | Plus |
BO01307.complete Sequence
2386 bp assembled on 2007-10-05
GenBank Submission: FJ629471
> BO01307.complete
GAAGTTATCAGTCGACATGACCAAAAAACTAGCTCTGAAACGCAGAGGAA
AGGATTCGGAACCCACAAATGAAGTGGTGGCCAGTTCCGAGGCTTCCGAA
AACGAGGAGGAGGAGGAGGACCTGCTGCAAGCTGTAAAAGATCCCGGCGA
AGATTCAACAGATGACGAGGGCATAGACCAGGAATACCACTCGGATTCCA
GTGAGGAACTGCAGTTCGAGAGCGATGAGGAGGGCAACTACTTGGGCAGA
AAGCAATCTTCATCAGCTGAGGAAGATGAAGAAAGTAGTGATGAAGAGGA
TAATGAAGAGGAGGAAAGCACTGATGGAGAGGAAGTGGAAGATGAGGAGA
AGGATTCCAAGTCAAAGCAAACAGACGATAAGCCCAGTGGAAGCGGTGCC
GCGTCTAAAAAAGCCCTTACAGCAGAGCTCCCGAAACGGGATAGCTCGAA
GCCTGAGTATCAGGATTCAGATACCTCCGACGAGGAGGACATAAGAAATA
CTGTAGGCAACATACCCATGCACTGGTACGACGAATACAAGCACATCGGT
TACGACTGGGATGCCAAGAAGATTATTAAACCACCACAAGGAGATCAAAT
TGATGAGTTCCTGCGTAAGATCGAGGACCCAGACTTTTGGCGTACCGTCA
AGGATCCACTTACCGGTCAGGATGTGCGCCTAACAGACGAGGACATTGCT
CTGATCAAGCGCATCGTTTCGGGTCGCATACCCAACAAGGATCACGAAGA
GTATGAGCCCTGGATCGAATGGTTCACATCGGAGGTGGAAAAGATGCCCA
TCAAGAACGTACCCGACCACAAACGCTCTTTCCTGCCCTCAGTTTCCGAG
AAAAAGCGCGTCTCTCGCATGGTGCACGCCCTCAAAATGGGCTGGATGAA
GACCACTGAGGAAGTGGAACGCGAGAAGCAGGCCAAGCGCGGTCCCAAGT
TCTACATGCTGTGGGAAACGGACACCAGTCGGGAACACATGCGCCGCATC
CACGATCCAGTCTCTGCGCCCAAACGCGACCTTCCCGGTCATGCCGAGTC
CTACAATCCACCGCCAGAGTATCTTTTCGATGCCAAGGAGACCAAGGAGT
GGCTTAAACTAAAGGACGAGCCACACAAGCGCAAGCTGCACTTCATGCCA
CAGAAGTTCAAGTCGCTGAGGGAGGTGCCCGCATACTCGAGATACCTTCG
GGAGCGTTTCCTTCGTTGCCTGGATCTTTACCTGTGTCCCCGTGCAAAGC
GTGTCAAGCTGAACATCGATGCCGAGTACCTTATCCCCAAGTTGCCCTCG
CCGCGTGACCTGCAACCCTTTCCCACGGTGGAGAGTATGGTTTACCGTGG
CCACACCGATCTGGTGCGGTCTGTTAGTGTGGAGCCCAAGGGAGAGTACC
TCGTCTCCGGTTCGGATGATAAAACCGTCAAGATTTGGGAAATTGCAACA
GGTCGTTGCATTCGCACAATCGAGACCGACGAAGTGGTACGCTGTGTGGC
TTGGTGTCCAAATCCCAAGCTGTCTATTATTGCGGTGGCCACTGGCAATC
GCTTGCTGCTCGTCAATCCTAAAGTGGGCGATAAGGTGCTGGTGAAGAAG
ACCGACGATCTCTTGGCTGAGGCGCCCAGTCAGGATGTCATTGAAAGTGA
ACGCATCAAGACGGCGGTGCAATGGTCAAATGCGGAAGCTGATGAGCAGG
AGAAGGGCGTCCGCGTAGTGATTACCCACTTCAAACCCATCCGACAGGTG
ACCTGGCACGGTCGTGGTGACTACTTGGCCACAGTGATGCCCGAAGGTGC
TAACCGCTCGGCTTTAATTCATCAGTTGTCCAAGCGGCGCTCACAGATTC
CATTCTCCAAGAGCAAGGGTCTCATCCAATTCGTGCTCTTCCATCCGGTG
AAGCCCTGCTTCTTTGTGGCGACGCAACACAACATTCGCATTTATGATCT
GGTCAAACAAGAGCTTGTCAAGAAGCTGCTGACCAACTCCAAATGGATAT
CGGGCATGTCTATTCATCCCAAGGGCGACAATCTGCTGGTGTCCACCTAT
GACAAAAAGATGCTCTGGTTCGATTTGGATCTGTCCACAAAGCCCTACCA
GACCATGCGACTCCATCGCAATGCAGTTCGCAGTGTTGCTTTCCATCTTC
GATATCCGCTCTTTGCTTCCGGCAGCGATGACCAGGCTGTGATCGTCTCC
CATGGCATGGTCTATAATGACCTGCTGCAAAACCCTTTGATTGTGCCTCT
CAAGAAGCTGCAAACACACGAGAAACGCGATGAGTTTGGTGTGCTGGATG
TTAACTGGCATCCGGTGCAGCCATGGGTCTTCTCCACGGGCGCGGACAGT
ACCATCCGACTATACACGGCAAGCTTTCTAGACCAT
BO01307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2355 | CG5033-PA | 1..2352 | 17..2368 | 11760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2514 | CG5033-RA | 69..2420 | 17..2368 | 11760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17789917..17791233 | 117..1433 | 6585 | 100 | Plus |
| 2R | 25286936 | 2R | 17791297..17791784 | 1434..1921 | 2440 | 100 | Plus |
| 2R | 25286936 | 2R | 17791844..17792140 | 1921..2217 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 17792204..17792354 | 2218..2368 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 17789747..17789849 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:25:38 has no hits.
BO01307.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:26 Download gff for
BO01307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 1..2355 | 17..2372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:49 Download gff for
BO01307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 51..2413 | 12..2377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:50 Download gff for
BO01307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 69..2420 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:26 Download gff for
BO01307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 51..2413 | 12..2377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:22 Download gff for
BO01307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 69..2420 | 17..2370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:22 Download gff for
BO01307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17789747..17789848 | 17..118 | 100 | -> | Plus |
| 2R | 17789919..17791233 | 119..1433 | 100 | -> | Plus |
| 2R | 17791297..17791784 | 1434..1921 | 100 | -> | Plus |
| 2R | 17791845..17792140 | 1922..2217 | 100 | -> | Plus |
| 2R | 17792204..17792354 | 2218..2370 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:50 Download gff for
BO01307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13677252..13677353 | 17..118 | 100 | -> | Plus |
| arm_2R | 13677424..13678738 | 119..1433 | 100 | -> | Plus |
| arm_2R | 13678802..13679289 | 1434..1921 | 100 | -> | Plus |
| arm_2R | 13679350..13679645 | 1922..2217 | 100 | -> | Plus |
| arm_2R | 13679709..13679859 | 2218..2370 | 98 | | Plus |
BO01307.pep Sequence
Translation from 16 to 2386
> BO01307.pep
MTKKLALKRRGKDSEPTNEVVASSEASENEEEEEDLLQAVKDPGEDSTDD
EGIDQEYHSDSSEELQFESDEEGNYLGRKQSSSAEEDEESSDEEDNEEEE
STDGEEVEDEEKDSKSKQTDDKPSGSGAASKKALTAELPKRDSSKPEYQD
SDTSDEEDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLR
KIEDPDFWRTVKDPLTGQDVRLTDEDIALIKRIVSGRIPNKDHEEYEPWI
EWFTSEVEKMPIKNVPDHKRSFLPSVSEKKRVSRMVHALKMGWMKTTEEV
EREKQAKRGPKFYMLWETDTSREHMRRIHDPVSAPKRDLPGHAESYNPPP
EYLFDAKETKEWLKLKDEPHKRKLHFMPQKFKSLREVPAYSRYLRERFLR
CLDLYLCPRAKRVKLNIDAEYLIPKLPSPRDLQPFPTVESMVYRGHTDLV
RSVSVEPKGEYLVSGSDDKTVKIWEIATGRCIRTIETDEVVRCVAWCPNP
KLSIIAVATGNRLLLVNPKVGDKVLVKKTDDLLAEAPSQDVIESERIKTA
VQWSNAEADEQEKGVRVVITHFKPIRQVTWHGRGDYLATVMPEGANRSAL
IHQLSKRRSQIPFSKSKGLIQFVLFHPVKPCFFVATQHNIRIYDLVKQEL
VKKLLTNSKWISGMSIHPKGDNLLVSTYDKKMLWFDLDLSTKPYQTMRLH
RNAVRSVAFHLRYPLFASGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQT
HEKRDEFGVLDVNWHPVQPWVFSTGADSTIRLYTASFLDH
BO01307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-PA | 784 | CG5033-PA | 1..784 | 1..784 | 4139 | 100 | Plus |
| Poc1-PA | 391 | CG10191-PA | 14..296 | 443..727 | 182 | 24.1 | Plus |
| Poc1-PB | 403 | CG10191-PB | 14..296 | 443..727 | 182 | 24.1 | Plus |
