Clone BO01311 Report

Search the DGRC for BO01311

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:13
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptHr39-RA
Protein status:BO01311.pep: validated full length
Sequenced Size:2458

Clone Sequence Records

BO01311.3prime Sequence

657 bp (654 high quality bases) assembled on 2005-11-30

> BO01311.3prime
ATGGTCTAGAAAGCTTGCATGCTCTCCGCGCAAAAGCTCCATTAGCAAAT
TGAAATCAGCTCCATCGCGAGTCTTGATCGTCAACATCTCCTTGCCAAGC
TGGCACGTTCGCTGCAAATCAGGAATGCGTAGCAAAAGCTCCCCAAACTT
GGATGGCGTGTCAGGATAATGCGCCAGGGTGTAAGCTTGCAAGCTCTGCA
AAGCTTTTTCCTGACACTCGCGCACCTTTACCGCTTCCTGTAACTCTGTC
GTATCTGACTGCAACAGCACAATAACTTTCATGGCAACATATTCGTAGCG
ATCAACGCGCAATCGCCTCAGGTGATCTGTTAGGTTGAGCATCCGTTCAA
TGCAAGTCTGCAAGCCATTTGATTTGGCCTGCGATAGGGTTATCTTCCTG
CCTTGTGACATTTTAATCTCTCCAGGAGTATCAATTGATCTAAAACAGCA
GGAGAAGAGCAACAGCTCGCACCACGAGTTAATGAGCAAGCAGATTTGGT
CATCGATCGAAATGTTCTTAAAAAGCGGCAAGCTCTTGCACCATTTGACG
ATTTTATAAAGACGGTGATCAGCCACGTTGCAGAGATGAGCGATAAGATC
AGGATTGGCATTCTCGCCATTGGACGAGAGACCAGCACTAGCCAGTAGTG
GATTGGT

BO01311.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8676-PB 2427 Hr39-RB 1786..2424 657..19 3195 100 Minus
CG8676-PA 2427 Hr39-RA 1786..2424 657..19 3195 100 Minus
CG8676-PD 2427 Hr39-RD 1786..2424 657..19 3195 100 Minus
CG8676-PC 2106 Hr39-RC 1786..2085 657..358 1500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hr39-RD 4828 CG8676-RD 2341..2979 657..19 3195 100 Minus
Hr39-RA 3291 CG8676-RA 2283..2921 657..19 3195 100 Minus
Hr39-RB 4844 CG8676-RB 2357..2995 657..19 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21257101..21257257 256..100 785 100 Minus
2L 23513712 2L 21255896..21256046 508..358 755 100 Minus
2L 23513712 2L 21255679..21255828 657..508 750 100 Minus
2L 23513712 2L 21256943..21257048 360..255 530 100 Minus
2L 23513712 2L 21257743..21257826 102..19 420 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:09:31 has no hits.

BO01311.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:28:09 Download gff for BO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-PB 1786..2427 16..657 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:54 Download gff for BO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8676-PD 1786..2427 16..657 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:11 Download gff for BO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 2357..3003 11..657 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:13 Download gff for BO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 2357..3003 11..657 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:13 Download gff for BO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21257746..21257834 11..99 95   Minus
2L 21255679..21255828 508..657 100 -> Minus
2L 21255897..21256046 358..507 100 -> Minus
2L 21256946..21257048 255..357 100 -> Minus
2L 21257103..21257257 100..254 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:11 Download gff for BO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21255679..21255828 508..657 100 -> Minus
arm_2L 21255897..21256046 358..507 100 -> Minus
arm_2L 21256946..21257048 255..357 100 -> Minus
arm_2L 21257103..21257257 100..254 100 -> Minus
arm_2L 21257746..21257834 11..99 95   Minus

BO01311.5prime Sequence

728 bp (617 high quality bases) assembled on 2005-11-30

> BO01311.5prime
GAAGTTATCAGTCGACATGCCAAACATGTCCAGCATCAAAGCGGAGCAGC
AAAGCGGTCCTCTTGGAGGAAGTAGCGGCTATCAAGTACCGGTCAACATG
TGCACCACCACAGTCGCGAATACGACGACCACTTTGGGAAGCTCCGCCGG
GGGAGCCACTGGCTCCCGGCACAACGTCTCCGTGACAAACATCAAGTGCG
AACTAGACGAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCA
AACTACGTTCACGGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCA
TAGGGAGTCCGATTCGGAGGAGGAGCTGGCAAGTATTGAGAACTTGAAGG
TTCGGCGAAGGACGGCGGCGGACAAAAATGGTCCTCGTCCAATGTCCTGG
GAGGGCGAGCTGAGCGATACTGAGGTCAACGGGGGCGAAGAGCTGATGGA
AATGGAGCCAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCAC
AACCCGTCTGCGCACTACAACCGATAAAAACAGAGCTAGAGAACATTGCA
GGCGAGATGCAGATTCAAGAGAAGTGTTACCCCCAGTCCAACACACAACA
TCACGCTGCCACAAAATTAAAAGTGGCCCCGACGCAAAGTGATCCCGATC
ATCTCAAGTTCGAACCGCCTCTGGGAGACAATTCTCCGCTACTGGCTGCA
CGTAGCAAGTCCAGCAGTGGAGGCCACC

BO01311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8676-PC 2106 Hr39-RC 1..629 17..645 3145 100 Plus
CG8676-PB 2427 Hr39-RB 1..629 17..645 3145 100 Plus
CG8676-PA 2427 Hr39-RA 1..629 17..645 3145 100 Plus
CG8676-PD 2427 Hr39-RD 1..629 17..645 3145 100 Plus
CG8676-PC 2106 Hr39-RC 635..712 651..728 390 100 Plus
CG8676-PB 2427 Hr39-RB 635..712 651..728 390 100 Plus
CG8676-PA 2427 Hr39-RA 635..712 651..728 390 100 Plus
CG8676-PD 2427 Hr39-RD 635..712 651..728 390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Hr39-RD 4828 CG8676-RD 556..1267 17..728 3515 99.7 Plus
Hr39-RA 3291 CG8676-RA 498..1209 17..728 3515 99.7 Plus
Hr39-RB 4844 CG8676-RB 572..1283 17..728 3515 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21253670..21254381 17..728 3485 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 16:12:45 has no hits.

BO01311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:28:10 Download gff for BO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-PD 1..712 17..728 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:24:55 Download gff for BO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8676-PA 1..712 17..728 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:55 Download gff for BO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 572..1283 17..728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:45:20 Download gff for BO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 572..1283 17..728 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:45:20 Download gff for BO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21253670..21254381 17..728 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:55 Download gff for BO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21253670..21254381 17..728 99   Plus

BO01311.complete Sequence

2458 bp (2458 high quality bases) assembled on 2006-05-02

GenBank Submission: FJ629472

> BO01311.complete
GAAGTTATCAGTCGACATGCCAAACATGTCCAGCATCAAAGCGGAGCAGC
AAAGCGGTCCTCTTGGAGGAAGTAGCGGCTATCAAGTACCGGTCAACATG
TGCACCACCACAGTCGCGAATACGACGACCACTTTGGGAAGCTCCGCCGG
GGGAGCCACTGGCTCCCGGCACAACGTCTCCGTGACAAACATCAAGTGCG
AACTAGACGAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCA
AACTACGTTCACGGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCA
TAGGGAGTCCGATTCGGAGGAGGAGCTGGCAAGTATTGAGAACTTGAAGG
TTCGGCGAAGGACGGCGGCGGACAAAAATGGTCCTCGTCCAATGTCCTGG
GAGGGCGAGCTGAGCGATACTGAGGTCAACGGGGGCGAAGAGCTGATGGA
AATGGAGCCAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCAC
AACCCGTCTGCGCACTACAACCGATAAAAACAGAGCTAGAGAACATTGCA
GGCGAGATGCAGATTCAAGAGAAGTGTTACCCCCAGTCCAACACACAACA
TCACGCTGCCACAAAATTAAAAGTGGCCCCGACGCAAAGTGATCCGATCA
ATCTCAAGTTCGAACCGCCTCTGGGAGACAATTCTCCGCTACTGGCTGCA
CGTAGCAAGTCCAGCAGTGGAGGCCACCTACCACTGCCAACGAATCCCAG
TCCCGACTCCGCCATACATTCCGTCTACACGCACAGCTCCCCCTCGCAGT
CGCCTCTGACGTCGCGCCACGCCCCCTACACTCCGTCTCTGAGCCGCAAC
AACAGCGACGCCTCGCACAGTAGCTGCTACAGCTATAGCTCCGAATTCAG
TCCCACACACTCGCCCATTCAAGCGCGTCATGCCCCACCCGCCGGCACGC
TCTATGGCAACCACCATGGTATTTACCGCCAGATGAAGGTGGAAGCCTCA
TCCACTGTGCCGTCCAGTGGGCAGGAGGCGCAGAACCTGAGTATGGACTC
TGCCTCTAGCAATCTGGATACAGTGGGCTTAGGATCTTCGCACCCCGCAT
CTCCGGCGGGCATATCACGTCAGCAGTTGATCAACTCGCCCTGCCCCATC
TGCGGTGACAAGATCAGCGGATTTCATTACGGGATTTTCTCCTGCGAGTC
TTGCAAGGGCTTCTTCAAGCGCACCGTGCAAAATCGCAAGAACTACGTGT
GCGTGCGTGGTGGACCATGTCAGGTCAGCATTTCCACGCGCAAGAAATGT
CCAGCCTGCCGCTTCGAGAAGTGTCTGCAGAAGGGAATGAAACTAGAAGC
GATTCGGGAGGACCGAACCCGTGGCGGCCGCTCCACATACCAGTGCTCCT
ACACGCTGCCCAACTCAATGCTTAGTCCGCTGCTTAGTCCTGATCAAGCG
GCAGCAGCTGCCGCCGCAGCAGCAGTGGCAAGTCAGCAGCAGCCGCACCA
GCGACTACATCAACTAAATGGATTTGGAGGTGTACCCATTCCCTGCTCTA
CTTCTCTTCCAGCCAGCCCTAGTTTGGCAGGAACTTCGGTCAAGTCGGAA
GAGATGGCGGAGACGGGCAAGCAAAGCCTCCGAACGGGAAGCGTACCACC
ACTACTGCAGGAAATCATGGATGTAGAGCATCTGTGGCAGTACACCGATG
CAGAGCTGGCCCGCATCAACCAACCACTGTCCGCATTCGCCTCTGGCAGC
TCTTCGTCGTCGTCATCGTCAGGTACATCCTCAGGCGCCCATGCACAACT
CACCAATCCACTACTGGCTAGTGCTGGTCTCTCGTCCAATGGCGAGAATG
CCAATCCTGATCTTATCGCTCATCTCTGCAACGTGGCTGATCACCGTCTT
TATAAAATCGTCAAATGGTGCAAGAGCTTGCCGCTTTTTAAGAACATTTC
GATCGATGACCAAATCTGCTTGCTCATTAACTCGTGGTGCGAGCTGTTGC
TCTTCTCCTGCTGTTTTAGATCAATTGATACTCCTGGAGAGATTAAAATG
TCACAAGGCAGGAAGATAACCCTATCGCAGGCCAAATCAAATGGCTTGCA
GACTTGCATTGAACGGATGCTCAACCTAACAGATCACCTGAGGCGATTGC
GCGTTGATCGCTACGAATATGTTGCCATGAAAGTTATTGTGCTGTTGCAG
TCAGATACGACAGAGTTACAGGAAGCGGTAAAGGTGCGCGAGTGTCAGGA
AAAAGCTTTGCAGAGCTTGCAAGCTTACACCCTGGCGCATTATCCTGACA
CGCCATCCAAGTTTGGGGAGCTTTTGCTACGCATTCCTGATTTGCAGCGA
ACGTGCCAGCTTGGCAAGGAGATGTTGACGATCAAGACTCGCGATGGAGC
TGATTTCAATTTGCTAATGGAGCTTTTGCGCGGAGAGCATGCAAGCTTTC
TAGACCAT

BO01311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hr39-RD 2427 CG8676-PD 1..2424 17..2440 12120 100 Plus
Hr39-RA 2427 CG8676-PA 1..2424 17..2440 12120 100 Plus
Hr39-RB 2427 CG8676-PB 1..2424 17..2440 12120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Hr39-RD 4828 CG8676-RD 556..2979 17..2440 12120 100 Plus
Hr39-RA 3291 CG8676-RA 498..2921 17..2440 12120 100 Plus
Hr39-RB 4844 CG8676-RB 572..2995 17..2440 12120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21253670..21255314 17..1661 8225 100 Plus
2L 23513712 2L 21255535..21255828 1658..1951 1470 100 Plus
2L 23513712 2L 21257101..21257257 2203..2359 785 100 Plus
2L 23513712 2L 21255896..21256046 1951..2101 755 100 Plus
2L 23513712 2L 21256943..21257048 2099..2204 530 100 Plus
2L 23513712 2L 21257743..21257826 2357..2440 420 100 Plus
3L 28110227 3L 18763448..18763536 1230..1142 190 80.9 Minus
Blast to na_te.dros performed on 2014-11-26 15:46:23 has no hits.

BO01311.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:49 Download gff for BO01311.complete
Subject Subject Range Query Range Percent Splice Strand
Hr39-RD 1..2427 17..2443 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:05 Download gff for BO01311.complete
Subject Subject Range Query Range Percent Splice Strand
Hr39-RD 569..3000 17..2448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:09 Download gff for BO01311.complete
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 572..2995 17..2442 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:49 Download gff for BO01311.complete
Subject Subject Range Query Range Percent Splice Strand
Hr39-RD 569..3000 17..2448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:20 Download gff for BO01311.complete
Subject Subject Range Query Range Percent Splice Strand
Hr39-RB 572..2995 17..2442 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:20 Download gff for BO01311.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21257746..21257826 2360..2442 97   Plus
2L 21257103..21257257 2205..2359 100 -> Plus
2L 21253670..21255313 17..1660 100 -> Plus
2L 21255538..21255828 1661..1951 100 -> Plus
2L 21255897..21256046 1952..2101 100 -> Plus
2L 21256946..21257048 2102..2204 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:09 Download gff for BO01311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21253670..21255313 17..1660 100 -> Plus
arm_2L 21255538..21255828 1661..1951 100 -> Plus
arm_2L 21255897..21256046 1952..2101 100 -> Plus
arm_2L 21256946..21257048 2102..2204 100 -> Plus
arm_2L 21257103..21257257 2205..2359 100 -> Plus
arm_2L 21257746..21257826 2360..2442 97   Plus

BO01311.pep Sequence

Translation from 16 to 2458

> BO01311.pep
MPNMSSIKAEQQSGPLGGSSGYQVPVNMCTTTVANTTTTLGSSAGGATGS
RHNVSVTNIKCELDELPSPNGNMVPVIANYVHGSLRIPLSGHSNHRESDS
EEELASIENLKVRRRTAADKNGPRPMSWEGELSDTEVNGGEELMEMEPTI
KSEVVPAVAPPQPVCALQPIKTELENIAGEMQIQEKCYPQSNTQHHAATK
LKVAPTQSDPINLKFEPPLGDNSPLLAARSKSSSGGHLPLPTNPSPDSAI
HSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSP
IQARHAPPAGTLYGNHHGIYRQMKVEASSTVPSSGQEAQNLSMDSASSNL
DTVGLGSSHPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFF
KRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDR
TRGGRSTYQCSYTLPNSMLSPLLSPDQAAAAAAAAAVASQQQPHQRLHQL
NGFGGVPIPCSTSLPASPSLAGTSVKSEEMAETGKQSLRTGSVPPLLQEI
MDVEHLWQYTDAELARINQPLSAFASGSSSSSSSSGTSSGAHAQLTNPLL
ASAGLSSNGENANPDLIAHLCNVADHRLYKIVKWCKSLPLFKNISIDDQI
CLLINSWCELLLFSCCFRSIDTPGEIKMSQGRKITLSQAKSNGLQTCIER
MLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTTELQEAVKVRECQEKALQS
LQAYTLAHYPDTPSKFGELLLRIPDLQRTCQLGKEMLTIKTRDGADFNLL
MELLRGEHASFLDH

BO01311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Hr39-PD 808 CG8676-PD 1..808 1..808 4214 100 Plus
Hr39-PA 808 CG8676-PA 1..808 1..808 4214 100 Plus
Hr39-PB 808 CG8676-PB 1..808 1..808 4214 100 Plus
Hr39-PC 701 CG8676-PC 1..698 1..698 3639 99.6 Plus
ftz-f1-PD 853 CG4059-PD 150..553 278..633 374 30.1 Plus