Clone Sequence Records
BO01333.3prime Sequence
769 bp (762 high quality bases) assembled on 2005-11-30
> BO01333.3prime
ATGGTCTAGAAAGCTTGCCTCCATCTTCACCACTGTTTCCCGGTCAACGC
CGAACTTATGCATCGCATAGTTGGTCACATGCTGCTCATGTTGACCCAAG
AGGGCGGCAGTCTGCTGCTGCAGCTGTTGCTGCTGCTGCTGATGTCTCTG
GAAGGCGGCCAGTTCGTAGTGCTCGTCCAGCGATGCCGATCGGCTGAGCA
TTATCTCTCCATGTTGCTGCTGCTGATGCTGCTGCTGCTGTTGTTGCTGT
TGCGACTGATCCATCTCTTCCATCTTGATGAGAGCGGGCTGCTCATCCTC
CTCCGGAGTCAGGTAGTAGGGTGGGGAAGGTCTCGTGGGCTTGCACAGCG
TCATTCCGGCCTGGTGATACGGATTCTGCAGACTAATAATGTTGCTGTGA
CTCAGGGACGATAATGTGCTCGATGCCGTGGTCGGTGTTGAGGTGACCAT
AAGTCCCGCCGACGCTGTGGAGCAGTTGGCCTGGGAGGTGAGCGACAAGG
CCTCCGTCTTGATCGCCGCCGCTGCCGCCGCCGCTGCTGCTGCTGCTGCC
GCCGTAATGGAGTTCGGCAGCAGTTGGGCCAGCAACTGGTGGTCGCTGGT
GGAGCCGCTGTTGCTGCTGCTGCTCAGTTGCTGAGCTTGCAGATATTTCT
GTATAAGTTTGTTGTTATTCTCATTGCTACTACTATTGTTGTTGTTGTTG
TTGTTGAAGATCGAGCTGTTGTTGTTGTTGTTATTGTTATTGTGGAGCTG
GTGAGTTGGCGATGGGGTG
BO01333.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3992-PB | 3750 | srp-RB | 2997..3747 | 769..19 | 3730 | 99.8 | Minus |
| CG3992-PA | 3795 | srp-RA | 3042..3792 | 769..19 | 3730 | 99.8 | Minus |
| CG3992-PD | 2241 | srp-RD | 1488..2238 | 769..19 | 3730 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RF | 3274 | CG3992-RF | 1943..2693 | 769..19 | 3740 | 99.9 | Minus |
| srp-RE | 3796 | CG3992-RE | 2465..3215 | 769..19 | 3740 | 99.9 | Minus |
| srp-RD | 3841 | CG3992-RD | 2510..3260 | 769..19 | 3740 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16002750..16003500 | 769..19 | 3740 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 00:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2938 | 724..80 | 353 | 55.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6899 | 738..521 | 309 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2539 | 768..535 | 306 | 63 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6923 | 768..527 | 287 | 61.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 752..518 | 286 | 61.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2534 | 753..586 | 271 | 65.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6886 | 691..513 | 198 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2666 | 758..590 | 190 | 61.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2938 | 721..523 | 184 | 58.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6865 | 651..519 | 183 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6839 | 633..518 | 171 | 65.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2466 | 652..521 | 165 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6860..7106 | 753..500 | 153 | 56.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 966..1163 | 743..545 | 146 | 58.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6416..6572 | 745..586 | 143 | 59.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1157 | 690..589 | 133 | 61.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1591 | 652..588 | 120 | 66.7 | Minus |
BO01333.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:28:50 Download gff for
BO01333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-PB | 2997..3750 | 18..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:00 Download gff for
BO01333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3992-PD | 1488..2241 | 18..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:51 Download gff for
BO01333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 2510..3265 | 13..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:08 Download gff for
BO01333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 2510..3265 | 13..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:08 Download gff for
BO01333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16002750..16003505 | 13..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:51 Download gff for
BO01333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11828472..11829227 | 13..769 | 99 | | Minus |
BO01333.5prime Sequence
817 bp (815 high quality bases) assembled on 2005-11-30
> BO01333.5prime
GAAGTTATCAGTCGACATGCGGAACAACTTTGCGTTCTACAGCGTCTACA
CCGGAGGCGGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTG
GCAGCGGCGGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAA
CATAGACGAGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATG
GCCACAGCACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACG
CTAAAGGACTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCA
GCAGCACCATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAAC
AACTTTACCACCAGCAACAGCAGCAGCAGCAGCAGCAACAACATCATCAC
CACCACAACAACTCCACCAGTTCGGCGGGCGGGGACTCCCCGTCGTCCTC
GCACGCACTGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCC
AGCGTGATAGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAG
CTCGGCAGCAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTAC
TCAGACTGCCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACAC
AAGCCCATCTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAG
CAACACCAGCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAA
TCAACACCAGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTC
TGCACCACTCGAGCTCC
BO01333.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3992-PB | 3750 | srp-RB | 943..1743 | 17..817 | 4005 | 100 | Plus |
| CG3992-PA | 3795 | srp-RA | 943..1743 | 17..817 | 4005 | 100 | Plus |
| CG3992-PD | 2241 | srp-RD | 1..189 | 629..817 | 945 | 100 | Plus |
| CG14307-PK | 2118 | fru-RK | 1930..1970 | 362..402 | 180 | 97.5 | Plus |
| CG14307-PG | 2391 | fru-RG | 2203..2243 | 362..402 | 180 | 97.5 | Plus |
| CG1597-PA | 2661 | CG1597-RA | 184..211 | 101..128 | 140 | 100 | Plus |
| CG18599-PA | 1428 | CG18599-RA | 253..284 | 368..399 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 4459 | CG3992-RA | 1029..1829 | 17..817 | 4005 | 100 | Plus |
| srp-RB | 4414 | CG3992-RB | 1029..1829 | 17..817 | 4005 | 100 | Plus |
| srp-RG | 3377 | CG3992-RG | 968..1211 | 574..817 | 1220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15995168..15995724 | 17..573 | 2785 | 100 | Plus |
| 3R | 32079331 | 3R | 15999322..15999569 | 570..817 | 1240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1950..2032 | 333..415 | 109 | 62.4 | Plus |
BO01333.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:28:51 Download gff for
BO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-PB | 939..1743 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:02 Download gff for
BO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3992-PB | 939..1743 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:13 Download gff for
BO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1025..1829 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:24 Download gff for
BO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RB | 1025..1829 | 9..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:24 Download gff for
BO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15995164..15995724 | 9..573 | 99 | -> | Plus |
| 3R | 15999326..15999569 | 574..817 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:13 Download gff for
BO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11820886..11821446 | 9..573 | 99 | -> | Plus |
| arm_3R | 11825048..11825291 | 574..817 | 100 | | Plus |
BO01333.complete Sequence
2884 bp (2884 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629476
> BO01333.complete
GAAGTTATCAGTCGACATGCGGAACAACTTTGCGTTCTACAGCGTCTACA
CCGGAGGCGGTGGCGGAGTGGGCGTGGGCATGACTAGCCACGAGCATTTG
GCAGCGGCGGCGGCAGCGGCAGCAGCAGTGGCCCAGGGCACCACACCCAA
CATAGACGAGGTCATCCAGGACACGCTGAAGGACGAGTGCTTCGAGGATG
GCCACAGCACCGATTACCATGTGCTGACCTCCGTGTCCGATATGCATACG
CTAAAGGACTCCAGTCCCTATGCCCTCACCCACGAGCAACTCCACCAGCA
GCAGCACCATCACCAGCAGCAACTGCATCACCATCAGCAGCAGCAGCAAC
AACTTTACCACCAGCAACAGCAGCAGCAGCAGCAGCAACAACATCATCAC
CACCACAACAACTCCACCAGTTCGGCGGGCGGGGACTCCCCGTCGTCCTC
GCACGCACTGTCCACCCTGCAGAGCTTCACCCAGCTGACCAGCGCCACCC
AGCGTGATAGCCTCTCGCCGGAGAATGACGCCTACTTTGCGGCCGCCCAG
CTCGGCAGCAGCTTGCAGAACAGCTCTGTTTATGCTGGCTCGTTGCTTAC
TCAGACTGCCAATGGCATTCAGTACGGCATGCAGTCCCCCAACCAAACAC
AAGCCCATCTCCAGCAGCAGCACCATCAGCAGCAGCAGCAACAACATCAG
CAACACCAGCAGCAGCAACTGCAGCAGCAGCAGCAGCAACATCACCACAA
TCAACACCAGCACCACAACTCCAGCAGCAGCAGTCCGGGGCCAGCGGGTC
TGCACCACTCGAGCTCCTCGGCGGCCACGGCGGCAGCGGTGGCTGCGGCA
ACGGCGGCGGTCAATGGACACAACAGCTCCTTGGAGGACGGCTACGGATC
GCCAAGGAGCAGCCACAGTGGCGGCGGGGGCGGTGGTACTCTGCCAGCCT
TCCAGCGGATCGCATACCCCAACAGTGGCTCCGTGGAACGTTACGCTCCG
ATAACCAATTATCGCGGTCAGAACGATACCTGGTTCGATCCGTTAAGCTA
CGCCACCTCCTCTTCCGGGCAGGCGCAGTTGGGCGTCGGTGTTGGAGCCG
GAGTGGTCTCGAATGTGATACGGAATGGGCGGGCCATTTCGGCTGCTAAT
GCAGCAGCTGCAGCCGCCGCGGATGGAACCACTGGACGCGTAGATCCTGG
AACCTTTCTTTCCGCCTCGGCATCGTTGTCAGCAATGGCCGCTGAATCAG
GCGGGGATTTCTATAAACCCAACTCATTTAATGTGGGCGGCGGTGGCCGT
AGTAAGGCTAACACGAGTGGTGCCGCCAGCTCCTACTCCTGTCCAGGCTC
GAATGCAACCTCGGCGGCGACTTCGGCGGTGGCGTCGGGAACGGCAGCAA
CTGCAGCGACGACGCTCGACGAGCACGTTAGTCGCGCCAATTCGAGACGC
TTGAGCGCCTCAAAGCGAGCCGGACTTTCCTGCTCCAACTGCCACACCAC
CCACACTTCGTTGTGGCGCCGCAATCCCGCCGGAGAGCCCGTCTGCAATG
CATGCGGCCTGTACTATAAGCTCCACAGTGTCCCACGGCCACTGACCATG
AAAAAGGACACCATTCAGAAACGCAAGCGCAAGCCGAAAGGAACGAAGAG
CGAGAAGTCCAAGTCAAAGTCAAAGAACGCTTTGAATGCCATCATGGAAA
GTGGTTCATTGGTGACCAATTGCCATAACGTTGGTGTCGTCCTGGACAGC
AGCCAGATGGATGTCAATGACGATATGAAACCACAGCTCGATCTGAAACC
ATACAACTCATACTCATCGCAGCCGCAGCAACAGCTTCCACAGTACCAGC
AGCAGCAGCAGCTGCTAATGGCTGATCAGCACTCATCGGCGGCCAGCTCG
CCCCATAGCATGGGTTCCACCTCATTGTCGCCATCAGCCATGTCACATCA
GCATCAGACTCATCCACATCAGCAGCAACAGCAGCAGCTCTGTTCCGGGC
TGGACATGTCGCCCAACTCAAACTACCAAATGTCGCCGCTCAACATGCAG
CAGCATCAGCAGCAGCAATCGTGCAGCATGCAGCACTCACCCAGCACACC
CACATCCATCTTCAACACCCCATCGCCAACTCACCAGCTCCACAATAACA
ATAACAACAACAACAACAGCTCGATCTTCAACAACAACAACAACAACAAT
AGTAGTAGCAATGAGAATAACAACAAACTTATACAGAAATATCTGCAAGC
TCAGCAACTGAGCAGCAGCAGCAACAGCGGCTCCACCAGCGACCACCAGT
TGCTGGCCCAACTGCTGCCGAACTCCATTACGGCGGCAGCAGCAGCAGCA
GCGGCGGCGGCAGCGGCGGCGATCAAGACGGAGGCCTTGTCGCTCACCTC
CCAGGCCAACTGCTCCACAGCGTCGGCGGGACTTATGGTCACCTCAACAC
CGACCACGGCATCGAGCACATTATCGTCCCTGAGTCACAGCAACATTATT
AGTCTGCAGAATCCGTATCACCAGGCCGGAATGACGCTGTGCAAGCCCAC
GAGACCTTCCCCACCCTACTACCTGACTCCGGAGGAGGATGAGCAGCCCG
CTCTCATCAAGATGGAAGAGATGGATCAGTCGCAACAGCAACAACAGCAG
CAGCAGCATCAGCAGCAGCAACATGGAGAGATAATGCTCAGCCGATCGGC
ATCGCTGGACGAGCACTACGAACTGGCCGCCTTCCAGAGACATCAGCAGC
AGCAGCAACAGCTGCAGCAGCAGACTGCCGCCCTCTTGGGTCAACATGAG
CAGCATGTGACCAACTATGCGATGCATAAGTTCGGCGTTGACCGGGAAAC
AGTGGTGAAGATGGAGGCAAGCTTTCTAGACCAT
BO01333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 3795 | CG3992-PA | 943..3792 | 17..2866 | 14220 | 99.9 | Plus |
| srp-RF | 2241 | CG3992-PF | 1..2238 | 629..2866 | 11160 | 99.9 | Plus |
| srp-RD | 2241 | CG3992-PD | 1..2238 | 629..2866 | 11160 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RA | 4459 | CG3992-RA | 1029..3878 | 17..2866 | 14220 | 99.9 | Plus |
| srp-RF | 3274 | CG3992-RF | 401..2693 | 574..2866 | 11435 | 99.9 | Plus |
| srp-RD | 3841 | CG3992-RD | 968..3260 | 574..2866 | 11435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16002406..16003500 | 1772..2866 | 5460 | 99.9 | Plus |
| 3R | 32079331 | 3R | 15995168..15995724 | 17..573 | 2785 | 100 | Plus |
| 3R | 32079331 | 3R | 15999322..15999773 | 570..1021 | 2260 | 100 | Plus |
| 3R | 32079331 | 3R | 16001189..16001406 | 1236..1453 | 1090 | 100 | Plus |
| 3R | 32079331 | 3R | 15999843..16000059 | 1019..1235 | 1070 | 99.5 | Plus |
| 3R | 32079331 | 3R | 16001751..16001916 | 1453..1618 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 16002167..16002323 | 1616..1772 | 785 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2938 | 2161..2805 | 353 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6899 | 2147..2364 | 309 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2539 | 2117..2350 | 306 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2666 | 1912..2295 | 305 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2250..2534 | 2024..2299 | 292 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6923 | 2117..2358 | 287 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 2133..2367 | 286 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2938 | 1779..2362 | 271 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2845 | 1932..2375 | 236 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..7106 | 2048..2385 | 207 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6914 | 1820..1988 | 204 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7091 | 1946..2293 | 198 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6697..6955 | 1928..2202 | 197 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..7092 | 1931..2313 | 184 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..7181 | 1945..2352 | 180 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6890 | 1819..1988 | 175 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2466 | 2233..2364 | 165 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..7074 | 1836..2210 | 162 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6416..6572 | 2140..2299 | 143 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1124 | 1945..1988 | 139 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2627..2989 | 1819..2168 | 136 | 54.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1102..1145 | 1945..1988 | 130 | 77.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 960..1012 | 1937..1989 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1591 | 2233..2297 | 120 | 66.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8022 | 1949..2027 | 118 | 65.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9466 | 1949..2027 | 118 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1587 | 1946..1988 | 116 | 74.4 | Plus |
BO01333.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:37 Download gff for
BO01333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 939..3795 | 9..2867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:53 Download gff for
BO01333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1023..3881 | 9..2872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:41 Download gff for
BO01333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1029..3878 | 17..2868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:38 Download gff for
BO01333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1023..3881 | 9..2872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:09 Download gff for
BO01333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RA | 1029..3878 | 17..2868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:09 Download gff for
BO01333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15995168..15995724 | 17..573 | 100 | -> | Plus |
| 3R | 15999326..15999773 | 574..1021 | 100 | -> | Plus |
| 3R | 15999846..16000059 | 1022..1235 | 99 | -> | Plus |
| 3R | 16001189..16001406 | 1236..1453 | 100 | -> | Plus |
| 3R | 16001752..16001916 | 1454..1618 | 100 | -> | Plus |
| 3R | 16002170..16002323 | 1619..1772 | 100 | -> | Plus |
| 3R | 16002407..16003500 | 1773..2868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:41 Download gff for
BO01333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11826911..11827128 | 1236..1453 | 100 | -> | Plus |
| arm_3R | 11827474..11827638 | 1454..1618 | 100 | -> | Plus |
| arm_3R | 11820890..11821446 | 17..573 | 100 | -> | Plus |
| arm_3R | 11825048..11825495 | 574..1021 | 100 | -> | Plus |
| arm_3R | 11825568..11825781 | 1022..1235 | 99 | -> | Plus |
| arm_3R | 11827892..11828045 | 1619..1772 | 100 | -> | Plus |
| arm_3R | 11828129..11829222 | 1773..2868 | 99 | | Plus |
BO01333.pep Sequence
Translation from 16 to 2884
> BO01333.pep
MRNNFAFYSVYTGGGGGVGVGMTSHEHLAAAAAAAAAVAQGTTPNIDEVI
QDTLKDECFEDGHSTDYHVLTSVSDMHTLKDSSPYALTHEQLHQQQHHHQ
QQLHHHQQQQQQLYHQQQQQQQQQQHHHHHNNSTSSAGGDSPSSSHALST
LQSFTQLTSATQRDSLSPENDAYFAAAQLGSSLQNSSVYAGSLLTQTANG
IQYGMQSPNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQQQQHHHNQHQHH
NSSSSSPGPAGLHHSSSSAATAAAVAAATAAVNGHNSSLEDGYGSPRSSH
SGGGGGGTLPAFQRIAYPNSGSVERYAPITNYRGQNDTWFDPLSYATSSS
GQAQLGVGVGAGVVSNVIRNGRAISAANAAAAAAADGTTGRVDPGTFLSA
SASLSAMAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCPGSNATSA
ATSAVASGTAATAATTLDEHVSRANSRRLSASKRAGLSCSNCHTTHTSLW
RRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKS
KSKNALNAIMESGSLVTNCHNVGVVLDSSQMDVNDDMKPQLDLKPYNSYS
SQPQQQLPQYQQQQQLLMADQHSSAASSPHSMGSTSLSPSAMSHQHQTHP
HQQQQQQLCSGLDMSPNSNYQMSPLNMQQHQQQQSCSMQHSPSTPTSIFN
TPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSS
SSNSGSTSDHQLLAQLLPNSITAAAAAAAAAAAAAIKTEALSLTSQANCS
TASAGLMVTSTPTTASSTLSSLSHSNIISLQNPYHQAGMTLCKPTRPSPP
YYLTPEEDEQPALIKMEEMDQSQQQQQQQQHQQQQHGEIMLSRSASLDEH
YELAAFQRHQQQQQQLQQQTAALLGQHEQHVTNYAMHKFGVDRETVVKME
ASFLDH
BO01333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-PA | 1264 | CG3992-PA | 315..1264 | 1..950 | 4936 | 100 | Plus |
| srp-PB | 1249 | CG3992-PB | 315..1249 | 1..950 | 4536 | 93.6 | Plus |
| srp-PF | 746 | CG3992-PF | 1..746 | 205..950 | 3862 | 100 | Plus |
| srp-PD | 746 | CG3992-PD | 1..746 | 205..950 | 3862 | 100 | Plus |
| srp-PE | 731 | CG3992-PE | 1..731 | 205..950 | 3462 | 91.8 | Plus |
| srp-PA | 1264 | CG3992-PA | 143..361 | 143..393 | 168 | 29 | Plus |
| srp-PB | 1249 | CG3992-PB | 143..361 | 143..393 | 168 | 29 | Plus |
