Clone Sequence Records
BO01335.3prime Sequence
925 bp (775 high quality bases) assembled on 2005-11-30
> BO01335.3prime
ATGGTCTAGAAAGCTTGCAGTTGGGTTAACCAGTAGGGCGTAAGCCTGTG
GATCCACTGCCTGCAGGGCACGAGCAAATGTGGAAAACTCTACAGAGGCT
CCTTTTCTTTTCACGTGATCCAACAGATCCTCCGCGCCCAGCCATATAAA
GGCGAACTGCTTCAGATGCGTCTGGCGGGCTAGTTGCATCCATTTCCGAT
CTTGGGGATCGGACCCATGTCCCAAAGGCTGATTCAGCAGCGAACAGAGC
CGGTCGTAAATGAATTTGTTTTTGAGCAGCAACTGCAATTTGTTGTTGTC
CATTTCGGTGTCTCTACTGGATTCATCTTTCTGTCTTCTTGGACCACTAC
TTAGGTCCAACTCCACGGAATCCTCGTCCTTTGTTTCGATGTCCATCTCC
TCGGACTTGATCTCCAGCTGACCAGCATCGCTACTTTCGTCCGACGATGA
ATCGATCTCCTCCTTGACCTTACATGGAATCCAGGTCATGGCCAGTTCTC
CCTTCTCCGGATACACATTCTTCAGCAGCTGGACCACCCGGTCATTTGCC
TTGCGTTCGGCCAATTCCAAGGGAGTATGGCCGGCTGCATTTTGTGCCTG
CAGGATGTCGGTAAGGTTTTCATTTTGGGCATCCAGAATGAGCACCAATA
GCTCCACACTTTGCTCCAGAACTGCCATGTGGAGTGCATTATTACCATCC
ATTGTGTTGGCCACGCTAATCGAGGTCCGATCATAGCTGATCAGTTTCTT
GGCCACATCGTACTTGTTCTGTCGAATGGCCATGTGCAAAGGCGTCAGAC
CATCGTCGGTCGTTAGCGAGAGGTCCAATTGTACGGTTGGCACTCCATAA
AGGGAGCTTTCCACGCAGCTTAAGTGCTCCTCCTTGACGGCCACATGCAG
TGGGGGTATTCCCGGCATTATTCTT
BO01335.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11992-PC | 2916 | Rel-RC | 2027..2913 | 905..19 | 4360 | 99.6 | Minus |
| CG11992-PD | 2580 | Rel-RD | 1691..2577 | 905..19 | 4360 | 99.6 | Minus |
| CG11992-PB | 2916 | Rel-RB | 2027..2913 | 905..19 | 4360 | 99.6 | Minus |
| CG11992-PA | 2916 | Rel-RA | 2027..2913 | 905..19 | 4360 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 3499 | CG11992-RA | 2550..3455 | 925..19 | 4450 | 99.4 | Minus |
| Rel-RB | 3351 | CG11992-RB | 2402..3307 | 925..19 | 4450 | 99.4 | Minus |
| Rel-RD | 2722 | CG11992-RD | 1773..2678 | 925..19 | 4450 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9044227..9045132 | 19..925 | 4425 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:20:52 has no hits.
BO01335.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:28:54 Download gff for
BO01335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-PD | 1672..2580 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:05 Download gff for
BO01335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11992-PA | 2008..2916 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:16 Download gff for
BO01335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RD | 1773..2678 | 19..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:55 Download gff for
BO01335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RD | 1773..2678 | 19..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:55 Download gff for
BO01335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9044227..9045132 | 19..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:16 Download gff for
BO01335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4869949..4870854 | 19..925 | 99 | | Plus |
BO01335.5prime Sequence
910 bp (786 high quality bases) assembled on 2005-11-30
> BO01335.5prime
GAAGTTATCAGTCGACATGAACATGAATCAGTACTACGACCTGGACAATG
GGAAAAATGTGATGTTTATGAACGATGCATCCAGCACCAGTGGCTATAGC
AGCAGTACATCACCCAACTCCACCAACCGATCCTTTTCACCAGCCCACTC
CCCGAAAACCATGGAACTGCAAACGGACTTCGCCAATCTTAATTTGCCCG
GCGGCAATTCACCACACCAGCCGCCAATGGCAAACTCACCATACCAGAAT
CAGCTGTTGAACAACGGCGGAATTTGCCAATTGGGTGCTACCAATTTAAT
AAACTCCACTGGCGTTAGTTTCGGCGTTGCTAATGTCACCAGTTTTGGCA
ACATGTACATGGATCACCAGTACTTTGTGCCCGCTCCGGCCACTGTGCCA
CCGTCCCAAAACTTTGGATACCATCAAAATGGCCTGGCATCTGACGGCGA
TATCAAACACGTGCCGCAGCTGCGGATCGTTGAGCAACCGGTGGAGAAGT
TCCGCTTTCGGTACAAGAGCGAGATGCATGGAACACATGGATCGCTAAAT
GGCGCCAATTCGAAGCGGACGCCCAAAACCTTCCCGGAGGTTACACTGTG
CAACTACGATGGACCCGCCGTCATCCGGTGCAGTTTGTTCCAAACTAACT
TGGACAGCCCACATTCCCATCAGCTGGTCGTGCGCAAGGACGATCGGGAT
GTGTGCGATCCGCATGATTTGCACGTGTCCAAGGAGCGCGGCTATGTGGC
GCAATTTATCAACATGGGCATCATACACACCGCCAAGAAGTACATATTCG
AGGAACTGTGCAAGAAGAAGCAGGATCGCCTGGTCTTTCAGATGAACCGC
CGCGAGTTGTCCCACAAACAGCTACAGGAACTGCATCANGAGACAGAGCG
TGAGGCCAGG
BO01335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11992-PC | 2916 | Rel-RC | 1..892 | 17..908 | 4441 | 99.8 | Plus |
| CG11992-PB | 2916 | Rel-RB | 1..892 | 17..908 | 4441 | 99.8 | Plus |
| CG11992-PA | 2916 | Rel-RA | 1..892 | 17..908 | 4441 | 99.8 | Plus |
| CG11992-PD | 2580 | Rel-RD | 1..556 | 353..908 | 2761 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 3499 | CG11992-RA | 543..1434 | 17..908 | 4449 | 99.9 | Plus |
| Rel-RB | 3351 | CG11992-RB | 395..1286 | 17..908 | 4449 | 99.9 | Plus |
| Rel-RC | 3042 | CG11992-RC | 86..977 | 17..908 | 4449 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9046544..9047435 | 908..17 | 4449 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:03:36 has no hits.
BO01335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:28:55 Download gff for
BO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-PB | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:07 Download gff for
BO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11992-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:16 Download gff for
BO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 82..979 | 14..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:02 Download gff for
BO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 82..979 | 14..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:02 Download gff for
BO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9046541..9047439 | 14..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:16 Download gff for
BO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4872263..4873161 | 14..910 | 99 | | Minus |
BO01335.complete Sequence
2947 bp (2947 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629477
> BO01335.complete
GAAGTTATCAGTCGACATGAACATGAATCAGTACTACGACCTGGACAATG
GGAAAAATGTGATGTTTATGAACGATGCATCCAGCACCAGTGGCTATAGC
AGCAGTACATCACCCAACTCCACCAACCGATCCTTTTCACCAGCCCACTC
CCCGAAAACCATGGAACTGCAAACGGACTTCGCCAATCTTAATTTGCCCG
GCGGCAATTCACCACACCAGCCGCCAATGGCAAACTCACCATACCAGAAT
CAGCTGTTGAACAACGGCGGAATTTGCCAATTGGGTGCTACCAATTTAAT
AAACTCCACTGGCGTTAGTTTCGGCGTTGCTAATGTCACCAGTTTTGGCA
ACATGTACATGGATCACCAGTACTTTGTGCCCGCTCCGGCCACTGTGCCA
CCGTCCCAAAACTTTGGATACCATCAAAATGGCCTGGCATCTGACGGCGA
TATCAAACACGTGCCGCAGCTGCGGATCGTTGAGCAACCGGTGGAGAAGT
TCCGCTTTCGGTACAAGAGCGAGATGCATGGAACACATGGATCGCTAAAT
GGCGCCAATTCGAAGCGGACGCCCAAAACCTTCCCGGAGGTTACACTGTG
CAACTACGATGGACCCGCCGTCATCCGGTGCAGTTTGTTCCAAACTAACT
TGGACAGCCCACATTCCCATCAGCTGGTCGTGCGCAAGGACGATCGGGAT
GTGTGCGATCCGCATGATTTGCACGTGTCCAAGGAGCGCGGCTATGTGGC
GCAATTTATCAACATGGGCATCATACACACCGCCAAGAAGTACATATTCG
AGGAACTGTGCAAGAAGAAGCAGGATCGCCTGGTCTTTCAGATGAACCGC
CGCGAGTTGTCCCACAAACAGCTACAGGAACTGCATCAGGAGACAGAGCG
TGAGGCCAAGGACATGAACTTGAACCAGGTGCGGCTCTGCTTTGAGGCCT
TTAAAATTGAGGACAACGGCGCATGGGTTCCACTTGCACCGCCTGTATAC
AGCAATGCAATCAATAACCGCAAGTCGGCACAAACTGGAGAGCTTCGCAT
CGTCCGCCTGAGCAAACCCACTGGCGGGGTGATGGGCAACGATGAGCTTA
TTCTACTGGTGGAAAAGGTCAGCAAGAAGAACATTAAAGTGAGGTTCTTC
GAGGAGGATGAGGACGGGGAAACCGTGTGGGAGGCATACGCAAAGTTCCG
CGAATCGGATGTACACCACCAATATGCCATTGTGTGCCAGACGCCTCCGT
ACAAAGATAAGGACGTGGACCGCGAGGTCAACGTGTACATCGAGCTCATT
CGTCCCTCCGACGATGAGCGCTCATTCCCGGCGCTGCCCTTCCGCTACAA
GCCACGGAGCGTAATTGTGTCGAGGAAACGCCGACGAACCGGGTCCTCTG
CCAATAGCAGCAGTTCGGGAACAGAAAGCTCTAATAACTCGCTGGATCTG
CCCAAAACGCTGGGCTTGGCGCAGCCACCAAATGGCTTGCCAAACCTTTC
ACAGCATGATCAGACTATAAGTGAGGAGTTCGGACGCGAAAAGCATCTAA
ATGAATTTATTGCTTCCGAAGATTTCCGCAAACTTATCGAGCACAACTCT
TCTGATCTCGAGAAGATCTGCCAGTTAGACATGGGAGAGTTGCAGCACGA
TGGTCATAACCGGGCGGAAGTGCCATCGCATCGAAATCGTACAATTAAAT
GCTTGGATGACTTATTCGAAATTTACAAACAGGACCGCATATCGCCAATA
AAAATCTCGCACCACAAAGTGGAGAAGTGGTTTATCGAGCATGCTCTGAA
TAACTACAATAGAGACACGCTCCTGCACGAAGTGATCAGCCACAAAAAGG
ACAAACTGAAGCTGGCCATCCAGACGATACAGGTGATGAACTACTTCAAT
CTGAAAGATGTGGTCAATAGCACTTTGAATGCGGACGGTGATAGTGCCCT
GCATGTGGCGTGCCAGCAAGACCGAGCGCACTACATACGACCTTTGCTGG
GTATGGGATGCAATCCAAATCTGAAGAATAATGCCGGAAATACCCCACTG
CATGTGGCCGTCAAGGAGGAGCACTTAAGCTGCGTGGAAAGCTTCCTTAA
TGGAGTGCCAACCGTACAATTGGACCTCTCGCTAACGAACGACGATGGTC
TGACGCCTTTGCACATGGCCATTCGACAGAACAAGTACGATGTGGCCAAG
AAACTGATCAGCTATGATCGGACCTCGATTAGCGTGGCCAACACAATGGA
TGGTAATAATGCACTCCACATGGCAGTTCTGGAGCAAAGTGTGGAGCTAT
TGGTGCTCATTCTGGATGCCCAAAATGAAAACCTTACCGACATCCTGCAG
GCACAAAATGCAGCCGGCCATACTCCCTTGGAATTGGCCGAACGCAAGGC
AAATGACCGGGTGGTCCAGCTGCTGAAGAATGTGTATCCGGAGAAGGGAG
AACTGGCCATGACCTGGATTCCATGTAAGGTCAAGGAGGAGATCGATTCA
TCGTCGGACGAAAGTAGCGATGCTGGTCAGCTGGAGATCAAGTCCGAGGA
GATGGACATCGAAACAAAGGACGAGGATTCCGTGGAGTTGGACCTAAGTA
GTGGTCCAAGAAGACAGAAAGATGAATCCAGTAGAGACACCGAAATGGAC
AACAACAAATTGCAGTTGCTGCTCAAAAACAAATTCATTTACGACCGGCT
CTGTTCGCTGCTGAATCAGCCTTTGGGACATGGGTCCGATCCCCAAGATC
GGAAATGGATGCAACTAGCCCGCCAGACGCATCTGAAGCAGTTCGCCTTT
ATATGGCTGGGCGCGGAGGATCTGTTGGATCACGTGAAAAGAAAAGGAGC
CTCTGTAGAGTTTTCCACATTTGCTCGTGCCCTGCAGGCAGTGGATCCAC
AGGCTTACGCCCTACTGGTTAACCCAACTGCAAGCTTTCTAGACCAT
BO01335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 2916 | CG11992-PA | 1..2913 | 17..2929 | 14565 | 100 | Plus |
| Rel-RB | 2916 | CG11992-PB | 1..2913 | 17..2929 | 14565 | 100 | Plus |
| Rel-RC | 2916 | CG11992-PC | 1..2913 | 17..2929 | 14565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 3499 | CG11992-RA | 543..3455 | 17..2929 | 14565 | 100 | Plus |
| Rel-RB | 3351 | CG11992-RB | 395..3307 | 17..2929 | 14565 | 100 | Plus |
| Rel-RC | 3042 | CG11992-RC | 86..2998 | 17..2929 | 14565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9044227..9046229 | 2929..927 | 10015 | 100 | Minus |
| 3R | 32079331 | 3R | 9046521..9047435 | 931..17 | 4575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:47:16 has no hits.
BO01335.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:41 Download gff for
BO01335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RA | 1..2916 | 17..2932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:55 Download gff for
BO01335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RA | 539..3455 | 14..2929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:02 Download gff for
BO01335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 86..2998 | 17..2931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:41 Download gff for
BO01335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RA | 539..3455 | 14..2929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:24 Download gff for
BO01335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 86..2998 | 17..2931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:24 Download gff for
BO01335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9044224..9046227 | 929..2931 | 99 | <- | Minus |
| 3R | 9046524..9047435 | 17..928 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:02 Download gff for
BO01335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4869946..4871949 | 929..2931 | 99 | <- | Minus |
| arm_3R | 4872246..4873157 | 17..928 | 100 | | Minus |
BO01335.pep Sequence
Translation from 16 to 2947
> BO01335.pep
MNMNQYYDLDNGKNVMFMNDASSTSGYSSSTSPNSTNRSFSPAHSPKTME
LQTDFANLNLPGGNSPHQPPMANSPYQNQLLNNGGICQLGATNLINSTGV
SFGVANVTSFGNMYMDHQYFVPAPATVPPSQNFGYHQNGLASDGDIKHVP
QLRIVEQPVEKFRFRYKSEMHGTHGSLNGANSKRTPKTFPEVTLCNYDGP
AVIRCSLFQTNLDSPHSHQLVVRKDDRDVCDPHDLHVSKERGYVAQFINM
GIIHTAKKYIFEELCKKKQDRLVFQMNRRELSHKQLQELHQETEREAKDM
NLNQVRLCFEAFKIEDNGAWVPLAPPVYSNAINNRKSAQTGELRIVRLSK
PTGGVMGNDELILLVEKVSKKNIKVRFFEEDEDGETVWEAYAKFRESDVH
HQYAIVCQTPPYKDKDVDREVNVYIELIRPSDDERSFPALPFRYKPRSVI
VSRKRRRTGSSANSSSSGTESSNNSLDLPKTLGLAQPPNGLPNLSQHDQT
ISEEFGREKHLNEFIASEDFRKLIEHNSSDLEKICQLDMGELQHDGHNRA
EVPSHRNRTIKCLDDLFEIYKQDRISPIKISHHKVEKWFIEHALNNYNRD
TLLHEVISHKKDKLKLAIQTIQVMNYFNLKDVVNSTLNADGDSALHVACQ
QDRAHYIRPLLGMGCNPNLKNNAGNTPLHVAVKEEHLSCVESFLNGVPTV
QLDLSLTNDDGLTPLHMAIRQNKYDVAKKLISYDRTSISVANTMDGNNAL
HMAVLEQSVELLVLILDAQNENLTDILQAQNAAGHTPLELAERKANDRVV
QLLKNVYPEKGELAMTWIPCKVKEEIDSSSDESSDAGQLEIKSEEMDIET
KDEDSVELDLSSGPRRQKDESSRDTEMDNNKLQLLLKNKFIYDRLCSLLN
QPLGHGSDPQDRKWMQLARQTHLKQFAFIWLGAEDLLDHVKRKGASVEFS
TFARALQAVDPQAYALLVNPTASFLDH
BO01335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-PA | 971 | CG11992-PA | 1..971 | 1..971 | 5092 | 100 | Plus |
| Rel-PB | 971 | CG11992-PB | 1..971 | 1..971 | 5092 | 100 | Plus |
| Rel-PC | 971 | CG11992-PC | 1..971 | 1..971 | 5092 | 100 | Plus |
| Rel-PD | 859 | CG11992-PD | 1..859 | 113..971 | 4497 | 100 | Plus |
| Dif-PD | 667 | CG6794-PD | 61..385 | 131..474 | 415 | 35.2 | Plus |
