Clone BO01339 Report

Search the DGRC for BO01339

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:13
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptPcl-RA
Protein status:BO01339.pep: validated full length
Sequenced Size:3163

Clone Sequence Records

BO01339.3prime Sequence

817 bp (770 high quality bases) assembled on 2005-11-30

> BO01339.3prime
ATGGTCTAGAAAGCTTGCATTTCCAAGCAATCCAATCGCCGTTGTCGCTG
TATCTCCGCCCCACTCCACCAGGTACTGGACCTGTCCATTTCCCATGCGC
CGCTTGGCCCGAATGGCAAAGGGCTCACCAGCATCTATGCGATTCATAGC
GCCACCAAAGTACTTGTTCACCGACTGCTTCAAGTCCAGCATGGAATGTC
CTGGGGCTCCAATGCCGTTGCTGCTGCTGCTGGTTGCCGTCGAGCTGGTG
GAGTTCCGGCGGCTTTGGCTGGGTGACTGCTTCTGTGGTCGCTGGCGCAA
CAGGCGCCCATGTGTCGGCTTTCCCATTGGCGGCGCGGGTGGCTGCAGAT
CTTTGGCATAGATAGGAAGGTAGTGGCTGGGTATGGGATTGATGGTGGTG
GTGCTGATGACCTCAATGGCCGTGGTCAGGCGGCGAGTGCGTCGTCTGCG
CACTTCCTGATTGGGCCCTATCGTAATGTCTTTGGCACTCAGTCTTCGCT
TGATGGTGCGCACCATGCGCGGCTGCTCCTTGGAGGTGCCCTTAAGCTTG
AAAATGCTGTTTATGATGCCATTTACTCCGACTCCAGTTCCCACAGAAAT
ACTTCGTCCCTGCGACGCCTTTTTGGGAGTGGCCATAAGGAATGGATTGT
TGCGTCCCAAAAAGTTGACCGGCGGTGGTATGATGAGGTCCAACGAACTG
GTTCCCCGACTGCTGCTTGAATTCTCGTCGGATGATAGATCACAGTGATT
GCGGCTGTTGTCATAGCGTTTGGACAAATCGAAAGCCTTGCGCTTCCGAC
TGCTATTTGCGTCCAGC

BO01339.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5109-PA 3132 Pcl-RA 2371..3129 777..19 3795 100 Minus
CG5109-PA 3132 Pcl-RA 2331..2367 817..781 160 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 4384 CG5109-RB 2829..3627 817..19 3935 99.6 Minus
Pcl-RA 3836 CG5109-RA 2829..3627 817..19 3935 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18138368..18138775 817..410 1980 99 Minus
2R 25286936 2R 18138839..18139233 413..19 1975 100 Minus
Blast to na_te.dros performed 2015-02-12 23:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6825 294..199 142 66 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6792 281..213 130 70.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1576 272..213 111 65 Minus

BO01339.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:01 Download gff for BO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-PA 2331..3132 16..817 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:18 Download gff for BO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5109-PA 2331..3132 16..817 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:23 Download gff for BO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 2829..3636 10..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:54 Download gff for BO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 2829..3636 10..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:54 Download gff for BO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18138368..18138773 412..817 99 -> Minus
2R 18138841..18139242 10..411 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:23 Download gff for BO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14025873..14026278 412..817 99 -> Minus
arm_2R 14026346..14026747 10..411 99   Minus

BO01339.5prime Sequence

832 bp (829 high quality bases) assembled on 2005-11-30

> BO01339.5prime
GAAGTTATCAGTCGACATGATGAACAACCATTTTCACTTGCAACACGATC
ATCCACCGCAGAACGTGGCACATCCGTTCATGCAACAGCCGAGTACCGCT
GTCCCATCAGCTCCTCCGGCCACCTACGGCTACTTAGCACAGCCAGCTGG
CCAGCAGCCGCAGTGGATGACCACCACCTACCAGATCCTGCCGCCCAGCG
TAGGACCTGCCACGGTGGCCAAGCGATACTATGCCACCACTGGGCCGCAG
ACCACGCATCCCACACATCCCAGCACCATCCAGATCACGAACAGTTTCGC
TCAGCAATCAACGCCACCGAAGCAACAGGCGGCAACAAGCTGCAGCCCAT
TCAAGGCCAACAACATCCGAATCATCTCGACGGCGCCAAGTGTATACAGT
CTGAATAAGCCGCCACAGGAAGCGCACTCCACATATGCTCCCGTTCAGTC
GTACTACTTGCCCAGTGGCGGTGGCCAAACTGCGGGACAAATCAATCTAC
TGGCGGCCAGCGGAACTGGCAAGCAACTGCAGCCGCCGCCGCTGGTGCCT
GTGACCAATTCCACCTCACCGCCCTCCACCGTCGTGTTAGACCGCATAAA
CATTTGCATCAATAACCACTATACGGAGACGCCCACTTCGCTAAGTTCAT
CGCTTACCACGGCCCAACAACCTTCGCCCATCATACCGGCCATCCAGCAC
AAGGCCATCCTGCCCCTCATCGACAGCAGCACGGCGGATAGCAGCAGCTG
CAGCAGCAGTTCTGTATCGAGCAGCAGTTATAGTGGTACCGCGACCACCT
CAGCAGCAGTTGTGATTGTGGATGAGCCGGAT

BO01339.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5109-PA 3132 Pcl-RA 1..816 17..832 4005 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 4384 CG5109-RB 499..1314 17..832 4035 99.6 Plus
Pcl-RA 3836 CG5109-RA 499..1314 17..832 4035 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18135924..18136739 17..832 4035 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 15:41:01 has no hits.

BO01339.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:02 Download gff for BO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:19 Download gff for BO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5109-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:57 Download gff for BO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 491..1314 9..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:30 Download gff for BO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 491..1314 9..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:30 Download gff for BO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18135916..18136739 9..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:57 Download gff for BO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14023421..14024244 9..832 99   Plus

BO01339.complete Sequence

3163 bp (3163 high quality bases) assembled on 2006-05-02

GenBank Submission: FJ629479

> BO01339.complete
GAAGTTATCAGTCGACATGATGAACAACCATTTTCACTTGCAACACGATC
ATCCACCGCAGAACGTGGCACATCCGTTCATGCAACAGCCGAGTACCGCT
GTCCCATCAGCTCCTCCGGCCACCTACGGCTACTTAGCACAGCCAGCTGG
CCAGCAGCCGCAGTGGATGACCACCACCTACCAGATCCTGCCGCCCAGCG
TAGGACCTGCCACGGTGGCCAAGCGATACTATGCCACCACTGGGCCGCAG
ACCACGCATCCCACACATCCCAGCACCATCCAGATCACGAACAGTTTCGC
TCAGCAATCAACGCCACCGAAGCAACAGGCGGCAACAAGCTGCAGCCCAT
TCAAGGCCAACAACATCCGAATCATCTCGACGGCGCCAAGTGTATACAGT
CTGAATAAGCCGCCACAGGAAGCGCACTCCACATATGCTCCCGTTCAGTC
GTACTACTTGCCCAGTGGCGGTGGCCAAACTGCGGGACAAATCAATCTAC
TGGCGGCCAGCGGAACTGGCAAGCAACTGCAGCCGCCGCCGCTGGTGCCT
GTGACCAATTCCACCTCACCGCCCTCCACCGTCGTGTTAGACCGCATAAA
CATTTGCATCAATAACCACTATACGGAGACGCCCACTTCGCTAAGTTCAT
CGCTTACCACGGCCCAACAACCTTCGCCCATCATACCGGCCATCCAGCAC
AAGGCCATCCTGCCCCTCATCGACAGCAGCACGGCGGATAGCAGCAGCTG
CAGCAGCAGTTCTGTATCGAGCAGCAGTTATAGTGGTACCGCGACCACCT
CAGCAGCAGTTGTGATTGTGGATGAGCCGGATTCAACGACCACAACGCCA
CAGACACCGCCAACTACGCCGGAGGCCATGAGTTCACCCGGTAAAAGTTC
GCCCTCGCCTCCGCTACTAGCCACGCAATCGCTGCTCAAAGGCGTCAACT
CAATGAAGCCAAGCTTCAAGACCGTCGAAGCAGCACCGCCAACGCCGCCA
ACACCTCCATCACCACCACCACCGCCGCCGGCACCACCAGTTGCCGCTCC
CTCGCCAGCGGTCACGTATGCGCTTCAGGAGGACGTCTTCATCAAATGCA
ATGATGGCAGATTTTACCTGGGCACCATTATTGACCAGACAAGCGATCAA
TATCTTATCCGCTTTGATGACCAGTCGGAGCAATGGTGTGAACCGGATAA
GCTGCGCAAGCTGGGTGGCGGTAGCTCGATTACCGCTGGCGGAGGCGGTG
CCTCTACCACGGAATCCACGAATACCTCCCCCAGTGGACCCATGTGCGTG
GCCTGCAAGCGATCGGATATCGAAGACGTGGTCGAAATTTGCGAGCGCTG
CGGACGTGGCTACCATCGTGGTTGCACCGTTGAAATTGTTACTGGCAGTG
GAATTTGGAGTTGCAAACGCTGCGCTAAACCCATGAAAATGCAACAGCCT
GTCAGCCATAAGATCACAAAACCAGCGGGAATTTGTCGCCAGTTGCCCTA
CCATGCGGATAAGCTCAGCTGGGATGAGAAGCATCGGGTCAACGAAGAGC
AGATCTACTGCTACTGCGGCAAACCGGGAAAATTCGATCACAATATGCTG
CAGTGCTGCAAATGTCGGAACTGGTTCCACACCCAATGCATGCAGAACTT
CAAGAAGAAGCTGCTGCGCGGCGATATGTTCTTTGTTTTCTGCTGCACGG
TCTGCAACAATGGCATAGAATTCGTTCGTCGTATGCAAATCGAATGGGTG
GACGTGCTCCACATTGCACTATACAATCTGCGAAAGCATCAGCACCAGAA
GTACCATCACCTGCTAAATGACATTTGGCCCTTCATACTCGAGCAGCGCC
ACCAGCTGCCTATCTGCGAGAAGTGGCGCACACTGCCCGAAACGGCACTT
ATGGAGCGTCTCAAGCAAACCCTTAAGGATTACTCTGACAGATTTGTTTG
CGGCAGGGAGTTTAAAAGGGCTCCGGCCTTCTATGCACTGAGACACAGTG
GCCCGCCACACATTCCCAAGGTATTCCTTGAGCCCCACGAGGAGCTGTCT
GATGAGCTGCTCGAAAAAAGATTTAAACTAATGCTCATGCCCGAGGAGCC
TGATGAAGGTGCCAACGAGCTTCCGAAAAGAGTTCCCAAAGATGTGTATG
AGTTTAATACAGATGAAGATGACCCAGTCGAGACCAGCGAGGACGAAATA
CCCATCAAACAGATTATTGAGAAGGCCAAAAAGCAGGCCGCTCAGAAGGC
CGATAAGCATGATGAGTTGCCACTGAAGCCGGACCTCGCCGACGACAATG
CCAACGATGGCGATCCCGGCAAACTACCAGCTCCCATTCCACCTCTGCTG
GACGCAAATAGCAGTCGGAAGCGCAAGGCTTTCCGATTGTCCAAACGCTA
TGACAACAGCCGCAATCACTGTGATCTATCATCCGACGAGAATTCAAGCA
GCAGTCGGGGAACCAGTTCGTTGGACCTCATCATACCACCGCCGGTCAAC
TTTTTGGGACGCAACAATCCATTCCTTATGGCCACTCCCAAAAAGGCGTC
GCAGGGACGAAGTATTTCTGTGGGAACTGGAGTCGGAGTAAATGGCATCA
TAAACAGCATTTTCAAGCTTAAGGGCACCTCCAAGGAGCAGCCGCGCATG
GTGCGCACCATCAAGCGAAGACTGAGTGCCAAAGACATTACGATAGGGCC
CAATCAGGAAGTGCGCAGACGACGCACTCGCCGCCTGACCACGGCCATTG
AGGTCATCAGCACCACCACCATCAATCCCATACCCAGCCACTACCTTCCT
ATCTATGCCAAAGATCTGCAGCCACCCGCGCCGCCAATGGGAAAGCCGAC
ACATGGGCGCCTGTTGCGCCAGCGACCACAGAAGCAGTCACCCAGCCAAA
GCCGCCGGAACTCCACCAGCTCGACGGCAACCAGCAGCAGCAGCAACGGC
ATTGGAGCCCCAGGACATTCCATGCTGGACTTGAAGCAGTCGGTGAACAA
GTACTTTGGTGGCGCTATGAATCGCATAGATGCTGGTGAGCCCTTTGCCA
TTCGGGCCAAGCGGCGCATGGGAAATGGACAGGTCCAGTACCTGGTGGAG
TGGGGCGGAGATACAGCGACAACGGCGATTGGATTGCTTGGAAATGCAAG
CTTTCTAGACCAT

BO01339.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 3132 CG5109-PB 1..3129 17..3145 15480 99.6 Plus
Pcl-RA 3132 CG5109-PA 1..3129 17..3145 15480 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-RB 4384 CG5109-RB 499..3627 17..3145 15480 99.6 Plus
Pcl-RA 3836 CG5109-RA 499..3627 17..3145 15480 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18135924..18137412 17..1505 7340 99.5 Plus
2R 25286936 2R 18137699..18138775 1678..2754 5325 99.6 Plus
2R 25286936 2R 18138839..18139233 2751..3145 1975 100 Plus
2R 25286936 2R 18137471..18137645 1505..1679 875 100 Plus
Blast to na_te.dros performed 2014-11-27 14:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6825 2870..2965 142 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6792 2883..2951 130 70.4 Plus

BO01339.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:42 Download gff for BO01339.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 1..3132 17..3148 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:57 Download gff for BO01339.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 488..3633 9..3154 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:57 Download gff for BO01339.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 499..3627 17..3147 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:42 Download gff for BO01339.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 488..3633 9..3154 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:27 Download gff for BO01339.complete
Subject Subject Range Query Range Percent Splice Strand
Pcl-RA 499..3627 17..3147 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:27 Download gff for BO01339.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18138841..18139233 2753..3147 99   Plus
2R 18135924..18137411 17..1504 99 -> Plus
2R 18137471..18137643 1505..1677 100 -> Plus
2R 18137699..18138773 1678..2752 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:57 Download gff for BO01339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14023429..14024916 17..1504 99 -> Plus
arm_2R 14024976..14025148 1505..1677 100 -> Plus
arm_2R 14025204..14026278 1678..2752 99 -> Plus
arm_2R 14026346..14026738 2753..3147 99   Plus

BO01339.pep Sequence

Translation from 16 to 3163

> BO01339.pep
MMNNHFHLQHDHPPQNVAHPFMQQPSTAVPSAPPATYGYLAQPAGQQPQW
MTTTYQILPPSVGPATVAKRYYATTGPQTTHPTHPSTIQITNSFAQQSTP
PKQQAATSCSPFKANNIRIISTAPSVYSLNKPPQEAHSTYAPVQSYYLPS
GGGQTAGQINLLAASGTGKQLQPPPLVPVTNSTSPPSTVVLDRINICINN
HYTETPTSLSSSLTTAQQPSPIIPAIQHKAILPLIDSSTADSSSCSSSSV
SSSSYSGTATTSAAVVIVDEPDSTTTTPQTPPTTPEAMSSPGKSSPSPPL
LATQSLLKGVNSMKPSFKTVEAAPPTPPTPPSPPPPPPAPPVAAPSPAVT
YALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLG
GGSSITAGGGGASTTESTNTSPSGPMCVACKRSDIEDVVEICERCGRGYH
RGCTVEIVTGSGIWSCKRCAKPMKMQQPVSHKITKPAGICRQLPYHADKL
SWDEKHRVNEEQIYCYCGKPGKFDHNMLQCCKCRNWFHTQCMQNFKKKLL
RGDMFFVFCCTVCNNGIEFVRRMQIEWVDVLHIALYNLRKHQHQKYHHLL
NDIWPFILEQRHQLPICEKWRTLPETALMERLKQTLKDYSDRFVCGREFK
RAPAFYALRHSGPPHIPKVFLEPHEELSDELLEKRFKLMLMPEEPDEGAN
ELPKRVPKDVYEFNTDEDDPVETSEDEIPIKQIIEKAKKQAAQKADKHDE
LPLKPDLADDNANDGDPGKLPAPIPPLLDANSSRKRKAFRLSKRYDNSRN
HCDLSSDENSSSSRGTSSLDLIIPPPVNFLGRNNPFLMATPKKASQGRSI
SVGTGVGVNGIINSIFKLKGTSKEQPRMVRTIKRRLSAKDITIGPNQEVR
RRRTRRLTTAIEVISTTTINPIPSHYLPIYAKDLQPPAPPMGKPTHGRLL
RQRPQKQSPSQSRRNSTSSTATSSSSNGIGAPGHSMLDLKQSVNKYFGGA
MNRIDAGEPFAIRAKRRMGNGQVQYLVEWGGDTATTAIGLLGNASFLDH

BO01339.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pcl-PB 1043 CG5109-PB 1..1043 1..1043 5568 100 Plus
Pcl-PA 1043 CG5109-PA 1..1043 1..1043 5568 100 Plus
Sgs1-PA 1286 CG3047-PA 368..708 14..350 166 24.6 Plus
Sgs1-PA 1286 CG3047-PA 560..900 14..350 165 23.9 Plus
CG13731-PB 792 CG13731-PB 97..455 13..351 161 24.9 Plus