Clone Sequence Records
BO01402.3prime Sequence
353 bp (352 high quality bases) assembled on 2005-11-30
> BO01402.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTTTGATGTACTTCATGTACTTCTTGG
CGTTGAAGTTGTCCTCCACCTCCTCCATGATCTTGACCTTCTTGCGCGGC
TTGCGGGCCTCCAATCTCGCTCTGCGCTCCGCATCGGTTAAGGTGCTCAG
ATCCAAGGGAAGCTTGATAATCTTCCTGGGCTCGTGATAGCGGATGTTTA
TCGTGGATCCATCGGGTTGCACCACAACTGTGGGATATAGCCGGCAGTAA
ACCGAGCGATGCAGCCTGGTAACCGCCGTCGTGGCCGATGAGATGCAGCG
TATCTGCTGAACAGCCTGGGGCAACTGTTTCAGCAACATGTCGACTGATA
ACT
BO01402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14283-PA | 324 | mRpL55-RA | 1..321 | 339..19 | 1605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 456 | CG14283-RA | 88..408 | 339..19 | 1605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19094642..19094818 | 163..339 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 19094442..19094587 | 19..164 | 730 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1159..1206 | 67..20 | 105 | 68.8 | Minus |
BO01402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:27 Download gff for
BO01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14283-PA | 1..324 | 18..339 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:56 Download gff for
BO01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14283-PA | 1..324 | 18..339 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:28 Download gff for
BO01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 73..409 | 13..351 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:17 Download gff for
BO01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 76..412 | 13..351 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:17 Download gff for
BO01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19094438..19094585 | 13..162 | 98 | <- | Plus |
| 3R | 19094642..19094830 | 163..351 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:28 Download gff for
BO01402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14920160..14920307 | 13..162 | 98 | <- | Plus |
| arm_3R | 14920364..14920552 | 163..351 | 97 | | Plus |
BO01402.5prime Sequence
353 bp (352 high quality bases) assembled on 2005-11-30
> BO01402.5prime
GAAGTTATCAGTCGACATGTTGCTGAAACAGTTGCCCCAGGCTGTTCAGC
AGATACGCTGCATCTCATCGGCCACGACGGCGGTTACCAGGCTGCATCGC
TCGGTTTACTGCCGGCTATATCCCACAGTTGTGGTGCAACCCGATGGATC
CACGATAAACATCCGCTATCACGAGCCCAGGAAGATTATCAAGCTTCCCT
TGGATCTGAGCACCTTAACCGATGCGGAGCGCAGAGCGAGATTGGAGGCC
CGCAAGCCGCGCAAGAAGGTCAAGATCATGGAGGAGGTGGAGGACAACTT
CAACGCCAAGAAGTACATGAAGTACATCAAAAAGAAGGCAAGCTTTCTAG
ACC
BO01402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14283-PA | 324 | mRpL55-RA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 456 | CG14283-RA | 88..408 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19094642..19094818 | 193..17 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 19094442..19094587 | 337..192 | 730 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1159..1206 | 289..336 | 105 | 68.8 | Plus |
BO01402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:28 Download gff for
BO01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14283-PA | 1..324 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:58 Download gff for
BO01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14283-PA | 1..324 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:34:46 Download gff for
BO01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 73..409 | 5..343 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:51 Download gff for
BO01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 76..412 | 5..343 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:51 Download gff for
BO01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19094642..19094830 | 5..193 | 97 | | Minus |
| 3R | 19094438..19094585 | 194..343 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:34:46 Download gff for
BO01402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14920160..14920307 | 194..343 | 98 | <- | Minus |
| arm_3R | 14920364..14920552 | 5..193 | 97 | | Minus |
BO01402.complete Sequence
355 bp (355 high quality bases) assembled on 2006-04-03
GenBank Submission: FJ629483
> BO01402.complete
GAAGTTATCAGTCGACATGTTGCTGAAACAGTTGCCCCAGGCTGTTCAGC
AGATACGCTGCATCTCATCGGCCACGACGGCGGTTACCAGGCTGCATCGC
TCGGTTTACTGCCGGCTATATCCCACAGTTGTGGTGCAACCCGATGGATC
CACGATAAACATCCGCTATCACGAGCCCAGGAAGATTATCAAGCTTCCCT
TGGATCTGAGCACCTTAACCGATGCGGAGCGCAGAGCGAGATTGGAGGCC
CGCAAGCCGCGCAAGAAGGTCAAGATCATGGAGGAGGTGGAGGACAACTT
CAACGCCAAGAAGTACATGAAGTACATCAAAAAGAAGGCAAGCTTTCTAG
ACCAT
BO01402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 324 | CG14283-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 456 | CG14283-RA | 88..408 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19094642..19094818 | 193..17 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 19094442..19094587 | 337..192 | 730 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1159..1206 | 289..336 | 105 | 68.8 | Plus |
BO01402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:29 Download gff for
BO01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 1..324 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:16 Download gff for
BO01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 68..404 | 5..343 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:19 Download gff for
BO01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 90..405 | 22..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:30 Download gff for
BO01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 68..404 | 5..343 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:00 Download gff for
BO01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 93..408 | 22..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:00 Download gff for
BO01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19094438..19094585 | 194..339 | 98 | <- | Minus |
| 3R | 19094642..19094813 | 22..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:19 Download gff for
BO01402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14920160..14920307 | 194..339 | 98 | <- | Minus |
| arm_3R | 14920364..14920535 | 22..193 | 100 | | Minus |
BO01402.pep Sequence
Translation from 16 to 355
> BO01402.pep
MLLKQLPQAVQQIRCISSATTAVTRLHRSVYCRLYPTVVVQPDGSTINIR
YHEPRKIIKLPLDLSTLTDAERRARLEARKPRKKVKIMEEVEDNFNAKKY
MKYIKKKASFLDH
BO01402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-PA | 107 | CG14283-PA | 1..107 | 1..107 | 542 | 100 | Plus |
