Clone Sequence Records
BO01404.5prime Sequence
413 bp (412 high quality bases) assembled on 2005-11-30
> BO01404.5prime
GAAGTTATCAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAAT
GGAACGATTTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGAC
GAGAAGAGCTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAA
AGCCCACAAAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTAC
TGGAGGAGAACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCC
TACATTCACCTACAGGCTATACTGGAGTTCATGTACGCCGGTGAGGTGAA
CGTGTCCCAGGAACAATTGCCAGCATTTCTTAAGACCGCCGATCGCCTCA
AAGTGAAAGGCCTCGCAGAGACACCCAGTTCGATAAAGCGGGAAGGTGCA
AGCTTTCTAGACC
BO01404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5738-PB | 384 | lolal-RB | 1..381 | 17..397 | 1905 | 100 | Plus |
| CG5738-PA | 384 | lolal-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
| CG5738-PC | 384 | lolal-RC | 1..381 | 17..397 | 1905 | 100 | Plus |
| CG5738-PD | 384 | lolal-RD | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lolal-RH | 958 | CG5738-RH | 271..652 | 16..397 | 1910 | 100 | Plus |
| lolal-RG | 1005 | CG5738-RG | 318..699 | 16..397 | 1910 | 100 | Plus |
| lolal-RF | 1384 | CG5738-RF | 284..665 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18155151..18155344 | 397..204 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 18155890..18155994 | 120..16 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 18155404..18155491 | 206..119 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:11:54 has no hits.
BO01404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:30 Download gff for
BO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-PB | 1..384 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:00 Download gff for
BO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5738-PD | 1..384 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:25 Download gff for
BO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RE | 382..767 | 12..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:45 Download gff for
BO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RF | 280..665 | 12..397 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:45 Download gff for
BO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18155151..18155342 | 206..397 | 100 | <- | Minus |
| 2R | 18155405..18155491 | 119..205 | 100 | <- | Minus |
| 2R | 18155892..18155998 | 12..118 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:25 Download gff for
BO01404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14042656..14042847 | 206..397 | 100 | <- | Minus |
| arm_2R | 14042910..14042996 | 119..205 | 100 | <- | Minus |
| arm_2R | 14043397..14043503 | 12..118 | 98 | | Minus |
BO01404.3prime Sequence
413 bp (412 high quality bases) assembled on 2005-11-30
> BO01404.3prime
ATGGTCTAGAAAGCTTGCACCTTCCCGCTTTATCGAACTGGGTGTCTCTG
CGAGGCCTTTCACTTTGAGGCGATCGGCGGTCTTAAGAAATGCTGGCAAT
TGTTCCTGGGACACGTTCACCTCACCGGCGTACATGAACTCCAGTATAGC
CTGTAGGTGAATGTAGGAGACATCTTTCAGGATAATGATCGGATGCTTCG
ATGGGTTCTCCTCCAGTAGCGCTTTAAAGTAGGGACTGCAAGCGGAAAGC
ACCATTTTGTGGGCTTTGCAGGTTTGGCCCTCGCAGGCGAGTGTTACATC
TGTGAAGCTCTTCTCGTCGCGCAGGTGACGGAACGAGGTCACCATATTCG
TTTGAAAATCGTTCCATTTTAGAAAGAACTGTTGATCCGACGACATCATG
TCGACTGATAACT
BO01404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5738-PB | 384 | lolal-RB | 1..381 | 399..19 | 1905 | 100 | Minus |
| CG5738-PA | 384 | lolal-RA | 1..381 | 399..19 | 1905 | 100 | Minus |
| CG5738-PC | 384 | lolal-RC | 1..381 | 399..19 | 1905 | 100 | Minus |
| CG5738-PD | 384 | lolal-RD | 1..381 | 399..19 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lolal-RH | 958 | CG5738-RH | 271..652 | 400..19 | 1910 | 100 | Minus |
| lolal-RG | 1005 | CG5738-RG | 318..699 | 400..19 | 1910 | 100 | Minus |
| lolal-RF | 1384 | CG5738-RF | 284..665 | 400..19 | 1910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18155151..18155344 | 19..212 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 18155890..18155994 | 296..400 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 18155404..18155491 | 210..297 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:17:18 has no hits.
BO01404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:29 Download gff for
BO01404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-PB | 1..384 | 16..399 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:26:59 Download gff for
BO01404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5738-PD | 1..384 | 16..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:29 Download gff for
BO01404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RE | 382..767 | 19..404 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:34 Download gff for
BO01404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RF | 280..665 | 19..404 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:34 Download gff for
BO01404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18155151..18155342 | 19..210 | 100 | <- | Plus |
| 2R | 18155405..18155491 | 211..297 | 100 | <- | Plus |
| 2R | 18155892..18155998 | 298..404 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:29 Download gff for
BO01404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14042656..14042847 | 19..210 | 100 | <- | Plus |
| arm_2R | 14042910..14042996 | 211..297 | 100 | <- | Plus |
| arm_2R | 14043397..14043503 | 298..404 | 98 | | Plus |
BO01404.complete Sequence
415 bp (415 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629484
> BO01404.complete
GAAGTTATCAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAAT
GGAACGATTTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGAC
GAGAAGAGCTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAA
AGCCCACAAAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTAC
TGGAGGAGAACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCC
TACATTCACCTACAGGCTATACTGGAGTTCATGTACGCCGGTGAGGTGAA
CGTGTCCCAGGAACAATTGCCAGCATTTCTTAAGACCGCCGATCGCCTCA
AAGTGAAAGGCCTCGCAGAGACACCCAGTTCGATAAAGCGGGAAGGTGCA
AGCTTTCTAGACCAT
BO01404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lolal-RH | 384 | CG5738-PH | 1..381 | 17..397 | 1905 | 100 | Plus |
| lolal-RG | 384 | CG5738-PG | 1..381 | 17..397 | 1905 | 100 | Plus |
| lolal-RF | 384 | CG5738-PF | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lolal-RH | 958 | CG5738-RH | 271..652 | 16..397 | 1910 | 100 | Plus |
| lolal-RG | 1005 | CG5738-RG | 318..699 | 16..397 | 1910 | 100 | Plus |
| lolal-RF | 1384 | CG5738-RF | 284..665 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18155151..18155344 | 397..204 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 18155890..18155994 | 120..16 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 18155404..18155491 | 206..119 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:50:50 has no hits.
BO01404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:28 Download gff for
BO01404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RC | 1..384 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:15 Download gff for
BO01404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RC | 262..647 | 12..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:42 Download gff for
BO01404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RE | 387..767 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:28 Download gff for
BO01404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RD | 303..688 | 12..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:32 Download gff for
BO01404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RF | 285..665 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:32 Download gff for
BO01404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18155148..18155342 | 206..399 | 98 | <- | Minus |
| 2R | 18155405..18155491 | 119..205 | 100 | <- | Minus |
| 2R | 18155892..18155993 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:42 Download gff for
BO01404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14042653..14042847 | 206..399 | 98 | <- | Minus |
| arm_2R | 14042910..14042996 | 119..205 | 100 | <- | Minus |
| arm_2R | 14043397..14043498 | 17..118 | 100 | | Minus |
BO01404.pep Sequence
Translation from 16 to 415
> BO01404.pep
MMSSDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMV
LSACSPYFKALLEENPSKHPIIILKDVSYIHLQAILEFMYAGEVNVSQEQ
LPAFLKTADRLKVKGLAETPSSIKREGASFLDH
BO01404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lolal-PH | 127 | CG5738-PH | 1..127 | 1..127 | 657 | 100 | Plus |
| lolal-PG | 127 | CG5738-PG | 1..127 | 1..127 | 657 | 100 | Plus |
| lolal-PF | 127 | CG5738-PF | 1..127 | 1..127 | 657 | 100 | Plus |
| lolal-PE | 127 | CG5738-PE | 1..127 | 1..127 | 657 | 100 | Plus |
| lolal-PD | 127 | CG5738-PD | 1..127 | 1..127 | 657 | 100 | Plus |
