Clone Sequence Records
BO01406.3prime Sequence
440 bp (439 high quality bases) assembled on 2005-11-30
> BO01406.3prime
ATGGTCTAGAAAGCTTGCTTTGAGCTTGCCTTCGGTGCCCACATACTTGA
TCTCATCGAAGGCCTTTCGTGCCTTTTTCAACTCCTCGTTCATGGTCAGA
AGATCCTTCACCCTAGCGTACTTTCGGGGATCTTTGCGCACCAGGAAGAT
AATGTCTTCGACTTGAACACGGCCTGTTCGACCGATCTCCATTGCCCGGT
GAGTGGTCTCAGCTATATACTCAATGACCAGGTCTTCCAACAGATCTACG
GTTTCCGTGTATGGATTTTTGTCGTCTCCGAATCCGAACATCATGCAGCG
CAGCTCCTTGCTGAATAGGCGCTTTCGTCCTGAGTTGGTAGCCACAAATT
GGTCATCCTCCGCGTCGTCATCAAAGTTGAAATCACCGCCCTCGAAATTC
TCCTCTGGCATGCTATTTGAGGCCATGTCGACTGATAACT
BO01406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10756-PA | 411 | Taf13-RA | 1..408 | 426..19 | 2015 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf13-RA | 628 | CG10756-RA | 82..489 | 426..19 | 2025 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20093317..20093660 | 38..381 | 1705 | 99.7 | Plus |
2L | 23513712 | 2L | 20093724..20093768 | 382..426 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:21:10 has no hits.
BO01406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:33 Download gff for
BO01406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-PA | 1..411 | 16..426 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:04 Download gff for
BO01406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10756-PA | 1..411 | 16..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:20 Download gff for
BO01406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 76..496 | 13..433 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:00:43 Download gff for
BO01406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 76..496 | 13..433 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:00:43 Download gff for
BO01406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20093318..20093660 | 39..381 | 99 | <- | Plus |
2L | 20093724..20093774 | 382..433 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:20 Download gff for
BO01406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20093724..20093774 | 382..433 | 94 | | Plus |
arm_2L | 20093318..20093660 | 39..381 | 99 | <- | Plus |
BO01406.5prime Sequence
440 bp (439 high quality bases) assembled on 2005-11-30
> BO01406.5prime
GAAGTTATCAGTCGACATGGCCTCAAATAGCATGCCAGAGGAGAATTTCG
AGGGCGGTGATTTCAACTTTGATGACGACGCGGAGGATGACCAATTTGTG
GCTACCAACTCAGGACGAAAGCGCCTATTCAGCAAGGAGCTGCGCTGCAT
GATGTTCGGATTCGGAGACGACAAAAATCCATACACGGAAACCGTAGATC
TGTTGGAAGACCTGGTCATTGAGTATATAGCTGAGACCACTCACCGGGCA
ATGGAGATCGGTCGAACAGGCCGTGTTCAAGTCGAAGACATTATCTTCCT
GGTGCGCAAAGATCCCCGAAAGTACGCTAGGGTGAAGGATCTTCTGACCA
TGAACGAGGAGTTGAAAAAGGCACGAAAGGCCTTCGATGAGATCAAGTAT
GTGGGCACCGAAGGCAAGCTCAAAGCAAGCTTTCTAGACC
BO01406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10756-PA | 411 | Taf13-RA | 1..408 | 17..424 | 2015 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf13-RA | 628 | CG10756-RA | 82..489 | 17..424 | 2025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20093317..20093660 | 405..62 | 1705 | 99.7 | Minus |
2L | 23513712 | 2L | 20093724..20093768 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:01:27 has no hits.
BO01406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:34 Download gff for
BO01406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-PA | 1..411 | 17..427 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:06 Download gff for
BO01406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10756-PA | 1..411 | 17..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:50:05 Download gff for
BO01406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 76..496 | 10..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:06 Download gff for
BO01406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 76..496 | 10..430 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:06 Download gff for
BO01406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20093318..20093660 | 62..404 | 99 | <- | Minus |
2L | 20093724..20093774 | 10..61 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:50:05 Download gff for
BO01406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20093318..20093660 | 62..404 | 99 | <- | Minus |
arm_2L | 20093724..20093774 | 10..61 | 94 | | Minus |
BO01406.complete Sequence
442 bp (442 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629485
> BO01406.complete
GAAGTTATCAGTCGACATGGCCTCAAATAGCATGCCAGAGGAGAATTTCG
AGGGCGGTGATTTCAACTTTGATGACGACGCGGAGGATGACCAATTTGTG
GCTACCAACTCAGGACGAAAGCGCCTATTCAGCAAGGAGCTGCGCTGCAT
GATGTTCGGATTCGGAGACGACAAAAATCCATACACGGAAACCGTAGATC
TGTTGGAAGACCTGGTCATTGAGTATATAGCTGAGACCACTCACCGGGCA
ATGGAGATCGGTCGAACAGGCCGTGTTCAAGTCGAAGACATTATCTTCCT
GGTGCGCAAAGATCCCCGAAAGTACGCTAGGGTGAAGGATCTTCTGACCA
TGAACGAGGAGTTGAAAAAGGCACGAAAGGCCTTCGATGAGATCAAGTAT
GTGGGCACCGAAGGCAAGCTCAAAGCAAGCTTTCTAGACCAT
BO01406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf13-RA | 411 | CG10756-PA | 1..408 | 17..424 | 2025 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf13-RA | 628 | CG10756-RA | 82..489 | 17..424 | 2025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20093317..20093660 | 405..62 | 1705 | 99.7 | Minus |
2L | 23513712 | 2L | 20093724..20093768 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:05 has no hits.
BO01406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:29 Download gff for
BO01406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 1..411 | 17..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:17 Download gff for
BO01406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 73..493 | 10..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:43 Download gff for
BO01406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 82..489 | 17..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:29 Download gff for
BO01406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 73..493 | 10..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:36 Download gff for
BO01406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf13-RA | 82..489 | 17..426 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:36 Download gff for
BO01406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20093223..20093246 | 405..426 | 91 | <- | Minus |
2L | 20093318..20093660 | 62..404 | 99 | <- | Minus |
2L | 20093724..20093768 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:43 Download gff for
BO01406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20093223..20093246 | 405..426 | 91 | <- | Minus |
arm_2L | 20093318..20093660 | 62..404 | 99 | <- | Minus |
arm_2L | 20093724..20093768 | 17..61 | 100 | | Minus |
BO01406.pep Sequence
Translation from 16 to 442
> BO01406.pep
MASNSMPEENFEGGDFNFDDDAEDDQFVATNSGRKRLFSKELRCMMFGFG
DDKNPYTETVDLLEDLVIEYIAETTHRAMEIGRTGRVQVEDIIFLVRKDP
RKYARVKDLLTMNEELKKARKAFDEIKYVGTEGKLKASFLDH
BO01406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf13-PA | 136 | CG10756-PA | 1..136 | 1..136 | 703 | 100 | Plus |