Clone Sequence Records
BO01408.3prime Sequence
452 bp (451 high quality bases) assembled on 2005-11-30
> BO01408.3prime
ATGGTCTAGAAAGCTTGCTTCATCAGACTCCGATTCCGATTCGGACTCTT
CTTCATCGTCATCATCGTCGTCGTCATCGTCGTCGTCGCTGCCGGCGGAG
CGATTTAGCCGCAGCATCTCCTGGAACTGGTGTACACGGATCTTTTGCGG
CACGATCTGCAGCAGAAACTCCAGATTCTTGTTCTTATTGACCACCTGGG
AGAGATGCTCGTACTTGAGCGCTTCGCCCGGTCGCTGGCCGAATTCCTCC
GTGTATGCCGCGCCCGCCAAATGGCGAACGAATAGCTCCGTGCACTTGGT
CATCAGGAAGAGCACCTCGTTGGTGATCAAGCCCGTGTCCATGGAGCTCT
TCATGATCGTTCGCACGCGGCTGAGGGGCAGAAAGGTTTCCGCGGTCGGT
GGACGCTCCACGGGTGGTTGGCTCCTTGGTTCGCCCATGTCGACTGATAA
CT
BO01408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15736-PA | 423 | Chrac-16-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chrac-16-RB | 737 | CG15736-RB | 89..508 | 438..19 | 2100 | 100 | Minus |
| Chrac-16-RA | 685 | CG15736-RA | 89..508 | 438..19 | 2100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12017454..12017873 | 19..438 | 2100 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7909..7980 | 231..300 | 111 | 65.3 | Plus |
BO01408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:36 Download gff for
BO01408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15736-PA | 1..423 | 18..438 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:10 Download gff for
BO01408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15736-PA | 1..423 | 18..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:21 Download gff for
BO01408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 89..508 | 19..438 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:01:58 Download gff for
BO01408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 89..508 | 19..438 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:01:58 Download gff for
BO01408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12017454..12017873 | 19..438 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:21 Download gff for
BO01408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11911487..11911906 | 19..438 | 100 | | Plus |
BO01408.5prime Sequence
452 bp (451 high quality bases) assembled on 2005-11-30
> BO01408.5prime
GAAGTTATCAGTCGACATGGGCGAACCAAGGAGCCAACCACCCGTGGAGC
GTCCACCGACCGCGGAAACCTTTCTGCCCCTCAGCCGCGTGCGAACGATC
ATGAAGAGCTCCATGGACACGGGCTTGATCACCAACGAGGTGCTCTTCCT
GATGACCAAGTGCACGGAGCTATTCGTTCGCCATTTGGCGGGCGCGGCAT
ACACGGAGGAATTCGGCCAGCGACCGGGCGAAGCGCTCAAGTACGAGCAT
CTCTCCCAGGTGGTCAATAAGAACAAGAATCTGGAGTTTCTGCTGCAGAT
CGTGCCGCAAAAGATCCGTGTACACCAGTTCCAGGAGATGCTGCGGCTAA
ATCGCTCCGCCGGCAGCGACGACGACGATGACGACGACGATGATGACGAT
GAAGAAGAGTCCGAATCGGAATCGGAGTCTGATGAAGCAAGCTTTCTAGA
CC
BO01408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15736-PA | 423 | Chrac-16-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chrac-16-RB | 737 | CG15736-RB | 89..508 | 17..436 | 2100 | 100 | Plus |
| Chrac-16-RA | 685 | CG15736-RA | 89..508 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12017454..12017873 | 436..17 | 2100 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 01:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7909..7980 | 224..155 | 111 | 65.3 | Minus |
BO01408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:37 Download gff for
BO01408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15736-PA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:12 Download gff for
BO01408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15736-PA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:27 Download gff for
BO01408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 89..508 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:13 Download gff for
BO01408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 89..508 | 17..436 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:13 Download gff for
BO01408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12017454..12017873 | 17..436 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:27 Download gff for
BO01408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11911487..11911906 | 17..436 | 100 | | Minus |
BO01408.complete Sequence
454 bp (454 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629486
> BO01408.complete
GAAGTTATCAGTCGACATGGGCGAACCAAGGAGCCAACCACCCGTGGAGC
GTCCACCGACCGCGGAAACCTTTCTGCCCCTCAGCCGCGTGCGAACGATC
ATGAAGAGCTCCATGGACACGGGCTTGATCACCAACGAGGTGCTCTTCCT
GATGACCAAGTGCACGGAGCTATTCGTTCGCCATTTGGCGGGCGCGGCAT
ACACGGAGGAATTCGGCCAGCGACCGGGCGAAGCGCTCAAGTACGAGCAT
CTCTCCCAGGTGGTCAATAAGAACAAGAATCTGGAGTTTCTGCTGCAGAT
CGTGCCGCAAAAGATCCGTGTACACCAGTTCCAGGAGATGCTGCGGCTAA
ATCGCTCCGCCGGCAGCGACGACGACGATGACGACGACGATGATGACGAT
GAAGAAGAGTCCGAATCGGAATCGGAGTCTGATGAAGCAAGCTTTCTAGA
CCAT
BO01408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chrac-16-RB | 423 | CG15736-PB | 1..420 | 17..436 | 2100 | 100 | Plus |
| Chrac-16-RA | 423 | CG15736-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chrac-16-RB | 737 | CG15736-RB | 89..508 | 17..436 | 2100 | 100 | Plus |
| Chrac-16-RA | 685 | CG15736-RA | 89..508 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12017454..12017873 | 436..17 | 2100 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7909..7980 | 224..155 | 111 | 65.3 | Minus |
BO01408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:30 Download gff for
BO01408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:18 Download gff for
BO01408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 84..503 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:21 Download gff for
BO01408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 89..508 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:30 Download gff for
BO01408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 84..503 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:24 Download gff for
BO01408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 89..508 | 17..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:24 Download gff for
BO01408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12017452..12017873 | 17..438 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:21 Download gff for
BO01408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11911485..11911906 | 17..438 | 99 | | Minus |
BO01408.pep Sequence
Translation from 16 to 454
> BO01408.pep
MGEPRSQPPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCT
ELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVPQKI
RVHQFQEMLRLNRSAGSDDDDDDDDDDDEEESESESESDEASFLDH
BO01408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chrac-16-PB | 140 | CG15736-PB | 1..140 | 1..140 | 720 | 100 | Plus |
| Chrac-16-PA | 140 | CG15736-PA | 1..140 | 1..140 | 720 | 100 | Plus |
