Clone Sequence Records
BO01410.5prime Sequence
470 bp (469 high quality bases) assembled on 2005-11-30
> BO01410.5prime
GAAGTTATCAGTCGACATGGTGGGCTCCAATTTCGGAATTATTTACCACA
ACAGCGCCGGTGGCGCAAGCAGTCATGGACAATCCTCGGGAGGAGGTGGC
GGTGGAGATCGGGATAGGACCACACCATCTTCGCATCTCAGCGACTTCAT
GTCGCAGCTGGAAGATTATACTCCATTGATTCCGGATGCGGTCACCTCGC
ACTATCTCAACATGGGAGGCTTTCAGTCGGACGACAAGCGCATCGTTCGG
CTGATCAGCCTAGCCGCCCAGAAGTACATGTCCGACATCATCGACGATGC
ACTGCAGCACTCCAAGGCGCGCACCCATATGCAAACCACCAATACACCGG
GAGGATCGAAGGCCAAGGACCGCAAGTTCACCTTGACCATGGAGGATCTG
CAGCCGGCTTTGGCCGACTACGGTATTAATGTTAGGAAAGTGGACTATAG
TCAGGCAAGCTTTCTAGACC
BO01410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3069-PA | 441 | Taf10b-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-RA | 560 | CG3069-RA | 69..506 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2767340..2767777 | 454..17 | 2190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:19:52 has no hits.
BO01410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:39 Download gff for
BO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3069-PA | 1..441 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:14 Download gff for
BO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3069-PA | 1..441 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:34:49 Download gff for
BO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 66..506 | 12..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:05 Download gff for
BO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 66..506 | 12..454 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:05 Download gff for
BO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2767340..2767780 | 12..454 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:34:49 Download gff for
BO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2767340..2767780 | 12..454 | 99 | | Minus |
BO01410.3prime Sequence
470 bp (469 high quality bases) assembled on 2005-11-30
> BO01410.3prime
ATGGTCTAGAAAGCTTGCCTGACTATAGTCCACTTTCCTAACATTAATAC
CGTAGTCGGCCAAAGCCGGCTGCAGATCCTCCATGGTCAAGGTGAACTTG
CGGTCCTTGGCCTTCGATCCTCCCGGTGTATTGGTGGTTTGCATATGGGT
GCGCGCCTTGGAGTGCTGCAGTGCATCGTCGATGATGTCGGACATGTACT
TCTGGGCGGCTAGGCTGATCAGCCGAACGATGCGCTTGTCGTCCGACTGA
AAGCCTCCCATGTTGAGATAGTGCGAGGTGACCGCATCCGGAATCAATGG
AGTATAATCTTCCAGCTGCGACATGAAGTCGCTGAGATGCGAAGATGGTG
TGGTCCTATCCCGATCTCCACCGCCACCTCCTCCCGAGGATTGTCCATGA
CTGCTTGCGCCACCGGCGCTGTTGTGGTAAATAATTCCGAAATTGGAGCC
CACCATGTCGACTGATAACT
BO01410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3069-PA | 441 | Taf10b-RA | 1..438 | 456..19 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-RA | 560 | CG3069-RA | 69..506 | 456..19 | 2190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2767340..2767777 | 19..456 | 2190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:21:34 has no hits.
BO01410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:38 Download gff for
BO01410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3069-PA | 1..441 | 18..456 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:13 Download gff for
BO01410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3069-PA | 1..441 | 18..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:23 Download gff for
BO01410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 66..506 | 19..461 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:21 Download gff for
BO01410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 66..506 | 19..461 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:21 Download gff for
BO01410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2767340..2767780 | 19..461 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:23 Download gff for
BO01410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2767340..2767780 | 19..461 | 99 | | Plus |
BO01410.complete Sequence
472 bp (472 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629487
> BO01410.complete
GAAGTTATCAGTCGACATGGTGGGCTCCAATTTCGGAATTATTTACCACA
ACAGCGCCGGTGGCGCAAGCAGTCATGGACAATCCTCGGGAGGAGGTGGC
GGTGGAGATCGGGATAGGACCACACCATCTTCGCATCTCAGCGACTTCAT
GTCGCAGCTGGAAGATTATACTCCATTGATTCCGGATGCGGTCACCTCGC
ACTATCTCAACATGGGAGGCTTTCAGTCGGACGACAAGCGCATCGTTCGG
CTGATCAGCCTAGCCGCCCAGAAGTACATGTCCGACATCATCGACGATGC
ACTGCAGCACTCCAAGGCGCGCACCCATATGCAAACCACCAATACACCGG
GAGGATCGAAGGCCAAGGACCGCAAGTTCACCTTGACCATGGAGGATCTG
CAGCCGGCTTTGGCCGACTACGGTATTAATGTTAGGAAAGTGGACTATAG
TCAGGCAAGCTTTCTAGACCAT
BO01410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-RA | 441 | CG3069-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-RA | 560 | CG3069-RA | 69..506 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2767340..2767777 | 454..17 | 2190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:52:51 has no hits.
BO01410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:32 Download gff for
BO01410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 1..441 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:20 Download gff for
BO01410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 265..705 | 12..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:23 Download gff for
BO01410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 69..506 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:32 Download gff for
BO01410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 265..705 | 12..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:46 Download gff for
BO01410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 69..506 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:46 Download gff for
BO01410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2767338..2767777 | 17..456 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:23 Download gff for
BO01410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2767338..2767777 | 17..456 | 99 | | Minus |
BO01410.pep Sequence
Translation from 16 to 472
> BO01410.pep
MVGSNFGIIYHNSAGGASSHGQSSGGGGGGDRDRTTPSSHLSDFMSQLED
YTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSK
ARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDYSQASFL
DH
BO01410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-PA | 146 | CG3069-PA | 1..146 | 1..146 | 759 | 100 | Plus |
| Taf10-PA | 167 | CG2859-PA | 51..165 | 35..144 | 289 | 53 | Plus |
