Clone Sequence Records
BO01412.5prime Sequence
482 bp (481 high quality bases) assembled on 2005-11-30
> BO01412.5prime
GAAGTTATCAGTCGACATGGACAAGAAATCCTCGCCGGTGCGACGACAAA
AGCGGCAGGCGAAGGTGATCGAGGAGAACTTCTGGGACTGCAGCGTCTGC
ACATATAGAAACTCGGCGGAGGCCTTCAAGTGTCGCATGTGCGACGTGCG
GAAAGGAACCTCCACGCGAAAGCCACGCCTGAACTCAGCGCTAGTCGCCC
AGCAGGCCGCCACTTTGCCAGGAGCCAGTGTCAACATGCCCAACGGGAAG
TCCGCCTCCGGATCACGGCATGGCAGTGGGCACGACCGGCAGAGGCACAA
GCGGTATCCGGCACGGTTGAAAAACGTGGACCGATCGACGGCACAGACGC
GAGAGGTGACGGTCAACTCGGTGACCGTGTTCATCACAGAGTACAAGGCC
AAGCCGGTGAGCAGCCGACGCGAATCCAGTGAGCAGAGCTTCAGCGAGAG
CAACGACAGCCGGAGTGCAAGCTTTCTAGACC
BO01412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12190-PA | 453 | CG12190-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-RB | 2242 | CG12190-RB | 521..970 | 17..466 | 2250 | 100 | Plus |
RYBP-RA | 2064 | CG12190-RA | 343..792 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22671628..22671940 | 154..466 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 22671107..22671246 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:37:08 has no hits.
BO01412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:42 Download gff for
BO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-PA | 1..453 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:17 Download gff for
BO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-PA | 1..453 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:34:40 Download gff for
BO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 356..810 | 11..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:35 Download gff for
BO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 338..792 | 11..466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:35 Download gff for
BO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22671102..22671245 | 11..155 | 97 | -> | Plus |
2R | 22671630..22671940 | 156..466 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:34:40 Download gff for
BO01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18558607..18558750 | 11..155 | 97 | -> | Plus |
arm_2R | 18559135..18559445 | 156..466 | 100 | | Plus |
BO01412.3prime Sequence
482 bp (481 high quality bases) assembled on 2005-11-30
> BO01412.3prime
ATGGTCTAGAAAGCTTGCACTCCGGCTGTCGTTGCTCTCGCTGAAGCTCT
GCTCACTGGATTCGCGTCGGCTGCTCACCGGCTTGGCCTTGTACTCTGTG
ATGAACACGGTCACCGAGTTGACCGTCACCTCTCGCGTCTGTGCCGTCGA
TCGGTCCACGTTTTTCAACCGTGCCGGATACCGCTTGTGCCTCTGCCGGT
CGTGCCCACTGCCATGCCGTGATCCGGAGGCGGACTTCCCGTTGGGCATG
TTGACACTGGCTCCTGGCAAAGTGGCGGCCTGCTGGGCGACTAGCGCTGA
GTTCAGGCGTGGCTTTCGCGTGGAGGTTCCTTTCCGCACGTCGCACATGC
GACACTTGAAGGCCTCCGCCGAGTTTCTATATGTGCAGACGCTGCAGTCC
CAGAAGTTCTCCTCGATCACCTTCGCCTGCCGCTTTTGTCGTCGCACCGG
CGAGGATTTCTTGTCCATGTCGACTGATAACT
BO01412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12190-PA | 453 | CG12190-RA | 1..450 | 468..19 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-RB | 2242 | CG12190-RB | 521..970 | 468..19 | 2250 | 100 | Minus |
RYBP-RA | 2064 | CG12190-RA | 343..792 | 468..19 | 2250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22671628..22671940 | 331..19 | 1565 | 100 | Minus |
2R | 25286936 | 2R | 22671107..22671246 | 468..329 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:14:03 has no hits.
BO01412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:41 Download gff for
BO01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-PA | 1..453 | 18..468 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:15 Download gff for
BO01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-PA | 1..453 | 18..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:08 Download gff for
BO01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 356..810 | 19..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:48:26 Download gff for
BO01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 338..792 | 19..474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:48:26 Download gff for
BO01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22671102..22671245 | 330..474 | 97 | -> | Minus |
2R | 22671630..22671940 | 19..329 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:08 Download gff for
BO01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18558607..18558750 | 330..474 | 97 | -> | Minus |
arm_2R | 18559135..18559445 | 19..329 | 100 | | Minus |
BO01412.complete Sequence
484 bp (484 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629488
> BO01412.complete
GAAGTTATCAGTCGACATGGACAAGAAATCCTCGCCGGTGCGACGACAAA
AGCGGCAGGCGAAGGTGATCGAGGAGAACTTCTGGGACTGCAGCGTCTGC
ACATATAGAAACTCGGCGGAGGCCTTCAAGTGTCGCATGTGCGACGTGCG
GAAAGGAACCTCCACGCGAAAGCCACGCCTGAACTCAGCGCTAGTCGCCC
AGCAGGCCGCCACTTTGCCAGGAGCCAGTGTCAACATGCCCAACGGGAAG
TCCGCCTCCGGATCACGGCATGGCAGTGGGCACGACCGGCAGAGGCACAA
GCGGTATCCGGCACGGTTGAAAAACGTGGACCGATCGACGGCACAGACGC
GAGAGGTGACGGTCAACTCGGTGACCGTGTTCATCACAGAGTACAAGGCC
AAGCCGGTGAGCAGCCGACGCGAATCCAGTGAGCAGAGCTTCAGCGAGAG
CAACGACAGCCGGAGTGCAAGCTTTCTAGACCAT
BO01412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-RB | 453 | CG12190-PB | 1..450 | 17..466 | 2250 | 100 | Plus |
RYBP-RA | 453 | CG12190-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-RB | 2242 | CG12190-RB | 521..970 | 17..466 | 2250 | 100 | Plus |
RYBP-RA | 2064 | CG12190-RA | 343..792 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22671628..22671940 | 154..466 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 22671107..22671246 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:40:53 has no hits.
BO01412.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:33 Download gff for
BO01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-RA | 1..453 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:21 Download gff for
BO01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-RA | 351..805 | 11..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:36 Download gff for
BO01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 361..810 | 17..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:33 Download gff for
BO01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-RA | 351..805 | 11..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:44 Download gff for
BO01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 343..792 | 17..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:44 Download gff for
BO01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22671107..22671245 | 17..155 | 100 | -> | Plus |
2R | 22671630..22671940 | 156..468 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:36 Download gff for
BO01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18559135..18559445 | 156..468 | 99 | | Plus |
arm_2R | 18558612..18558750 | 17..155 | 100 | -> | Plus |
BO01412.pep Sequence
Translation from 16 to 484
> BO01412.pep
MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTST
RKPRLNSALVAQQAATLPGASVNMPNGKSASGSRHGSGHDRQRHKRYPAR
LKNVDRSTAQTREVTVNSVTVFITEYKAKPVSSRRESSEQSFSESNDSRS
ASFLDH
BO01412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-PB | 150 | CG12190-PB | 1..150 | 1..150 | 771 | 100 | Plus |
RYBP-PA | 150 | CG12190-PA | 1..150 | 1..150 | 771 | 100 | Plus |