Clone Sequence Records
BO01414.3prime Sequence
500 bp (499 high quality bases) assembled on 2005-11-30
> BO01414.3prime
ATGGTCTAGAAAGCTTGCCTGTTTCCCCGCATCGTTTGCGGAGGACCCAT
CTTCGTTGTGCGGATAACTGGCGTCCAGAAAGAGATTACGATCCGATTTG
TTCGACTCTCGGTACTTTTGCAGGTAAATGGACAGTGGTTCCACGTAATT
GTCGAATCCCAGATTGCTGAACGCCACCAGCAGGTCGTCCCCGTTGACTG
TCTTGCGATTCTCCGCGACGCTACGTTCGATGGCCTCACTGCTAATGAAG
GATATGAACTCGGAGACACACTCCTGGATGCACTCTCGTGCATCCTTGGC
TATCTTGCCGTTCTGGGGCACCGGAACCTTCATGATCTTAATGATGTTGC
AGATGGGCAGAAATCGGTCCTGTTCGCGTAGCATTATCCCTCCATCCTGT
TTGTCCGAATCGTCGCCGGACGCCTCGTCCTCCTCCTTGACCAGCATGTC
GTTCAGATACTGCTGCGAGTCCTCGCTATTGCTCATGTCGACTGATAACT
BO01414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10447-PA | 471 | CG10447-RA | 1..468 | 486..19 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YB-RB | 796 | CG10447-RB | 93..560 | 486..19 | 2340 | 100 | Minus |
Nf-YB-RA | 928 | CG10447-RA | 93..560 | 486..19 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19736272..19736580 | 414..106 | 1545 | 100 | Minus |
2L | 23513712 | 2L | 19736632..19736720 | 107..19 | 445 | 100 | Minus |
2L | 23513712 | 2L | 19736136..19736208 | 486..414 | 365 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 583..664 | 389..472 | 135 | 65.5 | Plus |
BO01414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:44 Download gff for
BO01414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10447-PA | 1..471 | 15..486 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:21 Download gff for
BO01414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10447-PA | 1..471 | 15..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:31 Download gff for
BO01414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YB-RA | 87..563 | 15..494 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:07 Download gff for
BO01414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YB-RA | 87..563 | 15..494 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:07 Download gff for
BO01414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19736141..19736208 | 414..481 | 100 | -> | Minus |
2L | 19736273..19736580 | 106..413 | 100 | -> | Minus |
2L | 19736634..19736723 | 15..105 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:31 Download gff for
BO01414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19736141..19736208 | 414..481 | 100 | -> | Minus |
arm_2L | 19736273..19736580 | 106..413 | 100 | -> | Minus |
arm_2L | 19736634..19736723 | 15..105 | 97 | | Minus |
BO01414.5prime Sequence
500 bp (499 high quality bases) assembled on 2005-11-30
> BO01414.5prime
GAAGTTATCAGTCGACATGAGCAATAGCGAGGACTCGCAGCAGTATCTGA
ACGACATGCTGGTCAAGGAGGAGGACGAGGCGTCCGGCGACGATTCGGAC
AAACAGGATGGAGGGATAATGCTACGCGAACAGGACCGATTTCTGCCCAT
CTGCAACATCATTAAGATCATGAAGGTTCCGGTGCCCCAGAACGGCAAGA
TAGCCAAGGATGCACGAGAGTGCATCCAGGAGTGTGTCTCCGAGTTCATA
TCCTTCATTAGCAGTGAGGCCATCGAACGTAGCGTCGCGGAGAATCGCAA
GACAGTCAACGGGGACGACCTGCTGGTGGCGTTCAGCAATCTGGGATTCG
ACAATTACGTGGAACCACTGTCCATTTACCTGCAAAAGTACCGAGAGTCG
AACAAATCGGATCGTAATCTCTTTCTGGACGCCAGTTATCCGCACAACGA
AGATGGGTCCTCCGCAAACGATGCGGGGAAACAGGCAAGCTTTCTAGACC
BO01414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10447-PA | 471 | CG10447-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YB-RB | 796 | CG10447-RB | 93..560 | 17..484 | 2340 | 100 | Plus |
Nf-YB-RA | 928 | CG10447-RA | 93..560 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19736272..19736580 | 89..397 | 1545 | 100 | Plus |
2L | 23513712 | 2L | 19736632..19736720 | 396..484 | 445 | 100 | Plus |
2L | 23513712 | 2L | 19736136..19736208 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 583..664 | 114..31 | 135 | 65.5 | Minus |
BO01414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:45 Download gff for
BO01414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10447-PA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:22 Download gff for
BO01414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10447-PA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:33:00 Download gff for
BO01414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YB-RA | 87..563 | 9..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:19:27 Download gff for
BO01414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YB-RA | 87..563 | 9..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:19:27 Download gff for
BO01414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19736141..19736208 | 22..89 | 100 | -> | Plus |
2L | 19736273..19736580 | 90..397 | 100 | -> | Plus |
2L | 19736634..19736723 | 398..488 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:33:00 Download gff for
BO01414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19736141..19736208 | 22..89 | 100 | -> | Plus |
arm_2L | 19736273..19736580 | 90..397 | 100 | -> | Plus |
arm_2L | 19736634..19736723 | 398..488 | 97 | | Plus |
BO01414.complete Sequence
502 bp (502 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629489
> BO01414.complete
GAAGTTATCAGTCGACATGAGCAATAGCGAGGACTCGCAGCAGTATCTGA
ACGACATGCTGGTCAAGGAGGAGGACGAGGCGTCCGGCGACGATTCGGAC
AAACAGGATGGAGGGATAATGCTACGCGAACAGGACCGATTTCTGCCCAT
CTGCAACATCATTAAGATCATGAAGGTTCCGGTGCCCCAGAACGGCAAGA
TAGCCAAGGATGCACGAGAGTGCATCCAGGAGTGTGTCTCCGAGTTCATA
TCCTTCATTAGCAGTGAGGCCATCGAACGTAGCGTCGCGGAGAATCGCAA
GACAGTCAACGGGGACGACCTGCTGGTGGCGTTCAGCAATCTGGGATTCG
ACAATTACGTGGAACCACTGTCCATTTACCTGCAAAAGTACCGAGAGTCG
AACAAATCGGATCGTAATCTCTTTCTGGACGCCAGTTATCCGCACAACGA
AGATGGGTCCTCCGCAAACGATGCGGGGAAACAGGCAAGCTTTCTAGACC
AT
BO01414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YB-RB | 471 | CG10447-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
Nf-YB-RA | 471 | CG10447-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YB-RB | 796 | CG10447-RB | 93..560 | 17..484 | 2340 | 100 | Plus |
Nf-YB-RA | 928 | CG10447-RA | 93..560 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19736272..19736580 | 89..397 | 1545 | 100 | Plus |
2L | 23513712 | 2L | 19736632..19736720 | 396..484 | 445 | 100 | Plus |
2L | 23513712 | 2L | 19736136..19736208 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 583..664 | 114..31 | 135 | 65.5 | Minus |
BO01414.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:34 Download gff for
BO01414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10447-RA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:22 Download gff for
BO01414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10447-RA | 76..552 | 9..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:07 Download gff for
BO01414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YB-RA | 93..560 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:34 Download gff for
BO01414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10447-RA | 76..552 | 9..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:24 Download gff for
BO01414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YB-RA | 93..560 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:24 Download gff for
BO01414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19736136..19736208 | 17..89 | 100 | -> | Plus |
2L | 19736273..19736580 | 90..397 | 100 | -> | Plus |
2L | 19736634..19736720 | 398..486 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:07 Download gff for
BO01414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19736136..19736208 | 17..89 | 100 | -> | Plus |
arm_2L | 19736273..19736580 | 90..397 | 100 | -> | Plus |
arm_2L | 19736634..19736720 | 398..486 | 97 | | Plus |
BO01414.pep Sequence
Translation from 16 to 502
> BO01414.pep
MSNSEDSQQYLNDMLVKEEDEASGDDSDKQDGGIMLREQDRFLPICNIIK
IMKVPVPQNGKIAKDARECIQECVSEFISFISSEAIERSVAENRKTVNGD
DLLVAFSNLGFDNYVEPLSIYLQKYRESNKSDRNLFLDASYPHNEDGSSA
NDAGKQASFLDH
BO01414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YB-PB | 156 | CG10447-PB | 1..156 | 1..156 | 801 | 100 | Plus |
Nf-YB-PA | 156 | CG10447-PA | 1..156 | 1..156 | 801 | 100 | Plus |
NC2beta-PA | 183 | CG4185-PA | 20..103 | 43..127 | 142 | 41.2 | Plus |