Clone Sequence Records
BO01416.3prime Sequence
533 bp (532 high quality bases) assembled on 2005-11-30
> BO01416.3prime
ATGGTCTAGAAAGCTTGCAACGAAATACTGCGGCTTGCGCATGGTGATGC
CGTGGTCCGCGAGTGCCGGCACCAGGTCCTCCATGGCCAGCGTGTACTTC
CTGTCCTTGGGGTTTTTCTTGTCCTTGCTGGAACTGTGTCCGCTGGAATG
CTGGATGTTCGTGGTGCGCGTCTTGCAGTGCTGCAGTGCGTCGTTGGCAA
TATCCGAGATGAACTTCTGCGCGGACACCGAGACGAGGCGCACTATCTTG
GGGTCCACTGTGCAGAAGCCAGCCGTTTTCAAGATGTGCATGGTGAGGGC
GTCTGGTATGGTGGGCGAGTAGTCCTCCAGCTGCTTTATCAGCTCATCCA
TCTCCGATTCCTCCGTCGTCAGAGGAACCTCCTCCACGTCCGGTTGCTCC
TCGTCGGAATGCAGTTCGGACTGCATTAGTGGCGAGTCTATATCCTCCTC
CTCGGTGTCCGTGGCCGATGTTACGGATTCTGCGGGTGTAACACTGATGT
CCTCGCCATCGGAAGCCATGTCGACTGATAACT
BO01416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2859-PA | 504 | Taf10-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-RA | 664 | CG2859-RA | 92..592 | 519..19 | 2505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768285..2768540 | 274..19 | 1280 | 100 | Minus |
2L | 23513712 | 2L | 2767981..2768227 | 519..273 | 1235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 4126..4175 | 439..390 | 106 | 68 | Minus |
BO01416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:48 Download gff for
BO01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-PA | 1..504 | 18..519 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:27 Download gff for
BO01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2859-PA | 1..504 | 18..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:53 Download gff for
BO01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..599 | 10..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:19 Download gff for
BO01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..599 | 10..519 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:19 Download gff for
BO01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2768286..2768547 | 10..273 | 98 | | Minus |
2L | 2767981..2768226 | 274..519 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:53 Download gff for
BO01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2767981..2768226 | 274..519 | 100 | -> | Minus |
arm_2L | 2768286..2768547 | 10..273 | 98 | | Minus |
BO01416.5prime Sequence
533 bp (532 high quality bases) assembled on 2005-11-30
> BO01416.5prime
GAAGTTATCAGTCGACATGGCTTCCGATGGCGAGGACATCAGTGTTACAC
CCGCAGAATCCGTAACATCGGCCACGGACACCGAGGAGGAGGATATAGAC
TCGCCACTAATGCAGTCCGAACTGCATTCCGACGAGGAGCAACCGGACGT
GGAGGAGGTTCCTCTGACGACGGAGGAATCGGAGATGGATGAGCTGATAA
AGCAGCTGGAGGACTACTCGCCCACCATACCAGACGCCCTCACCATGCAC
ATCTTGAAAACGGCTGGCTTCTGCACAGTGGACCCCAAGATAGTGCGCCT
CGTCTCGGTGTCCGCGCAGAAGTTCATCTCGGATATTGCCAACGACGCAC
TGCAGCACTGCAAGACGCGCACCACGAACATCCAGCATTCCAGCGGACAC
AGTTCCAGCAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTGGC
CATGGAGGACCTGGTGCCGGCACTCGCGGACCACGGCATCACCATGCGCA
AGCCGCAGTATTTCGTTGCAAGCTTTCTAGACC
BO01416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2859-PA | 504 | Taf10-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-RA | 664 | CG2859-RA | 92..592 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768285..2768540 | 262..517 | 1280 | 100 | Plus |
2L | 23513712 | 2L | 2767981..2768227 | 17..263 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 16:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 4126..4175 | 97..146 | 106 | 68 | Plus |
BO01416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:49 Download gff for
BO01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-PA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:28 Download gff for
BO01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2859-PA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:10 Download gff for
BO01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..599 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:48:38 Download gff for
BO01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..599 | 17..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:48:38 Download gff for
BO01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2767981..2768226 | 17..262 | 100 | -> | Plus |
2L | 2768286..2768547 | 263..526 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:10 Download gff for
BO01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2767981..2768226 | 17..262 | 100 | -> | Plus |
arm_2L | 2768286..2768547 | 263..526 | 98 | | Plus |
BO01416.complete Sequence
535 bp (535 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629490
> BO01416.complete
GAAGTTATCAGTCGACATGGCTTCCGATGGCGAGGACATCAGTGTTACAC
CCGCAGAATCCGTAACATCGGCCACGGACACCGAGGAGGAGGATATAGAC
TCGCCACTAATGCAGTCCGAACTGCATTCCGACGAGGAGCAACCGGACGT
GGAGGAGGTTCCTCTGACGACGGAGGAATCGGAGATGGATGAGCTGATAA
AGCAGCTGGAGGACTACTCGCCCACCATACCAGACGCCCTCACCATGCAC
ATCTTGAAAACGGCTGGCTTCTGCACAGTGGACCCCAAGATAGTGCGCCT
CGTCTCGGTGTCCGCGCAGAAGTTCATCTCGGATATTGCCAACGACGCAC
TGCAGCACTGCAAGACGCGCACCACGAACATCCAGCATTCCAGCGGACAC
AGTTCCAGCAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTGGC
CATGGAGGACCTGGTGCCGGCACTCGCGGACCACGGCATCACCATGCGCA
AGCCGCAGTATTTCGTTGCAAGCTTTCTAGACCAT
BO01416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-RA | 504 | CG2859-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-RA | 664 | CG2859-RA | 92..592 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768285..2768540 | 262..517 | 1280 | 100 | Plus |
2L | 23513712 | 2L | 2767981..2768227 | 17..263 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 4126..4175 | 97..146 | 106 | 68 | Plus |
BO01416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:36 Download gff for
BO01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:25 Download gff for
BO01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 70..577 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:11 Download gff for
BO01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..592 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:36 Download gff for
BO01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 70..577 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:19 Download gff for
BO01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..592 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:19 Download gff for
BO01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2767981..2768226 | 17..262 | 100 | -> | Plus |
2L | 2768286..2768540 | 263..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:11 Download gff for
BO01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2767981..2768226 | 17..262 | 100 | -> | Plus |
arm_2L | 2768286..2768540 | 263..519 | 99 | | Plus |
BO01416.pep Sequence
Translation from 16 to 535
> BO01416.pep
MASDGEDISVTPAESVTSATDTEEEDIDSPLMQSELHSDEEQPDVEEVPL
TTEESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSA
QKFISDIANDALQHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLV
PALADHGITMRKPQYFVASFLDH
BO01416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-PA | 167 | CG2859-PA | 1..167 | 1..167 | 854 | 100 | Plus |
Taf10b-PA | 146 | CG3069-PA | 35..144 | 51..165 | 289 | 53 | Plus |