Clone Sequence Records
BO01422.3prime Sequence
617 bp (616 high quality bases) assembled on 2005-11-30
> BO01422.3prime
ATGGTCTAGAAAGCTTGCGGACAAACTATGATTATAGGGCGAAGCGAAAT
CGCGTTGATATGCCGCCGCCGGATGCAGATGATGTGGATGAATTGCCGGT
GGTGGCGCCTGATGGTGACCATTCATACTCCCATAGACGTCGGACCGCGA
TTTGTGGGAGTTCGAGGGCGTGCCGCTCAGCAGCTCAGCCATGAATCCGA
TGTAGGTGATGGCCAAGCGAAGGGTTTCGATGCGGGACAGTCGTTTCTCG
TAGGCGAAGGTGGGCACCTTGCGGCGCAACTTGTCGAAGGCCTCGTTTAG
GTTAAACATGCGACGGCGTTCGCGGATATTTGCAGCTCTCCGTTGGGCCA
TTGATGCCACACGGCGACGCGTTTTCTTCGAGGAGCTGGAGGAGCCGTTG
GCCCTCCCATTTGTCGACGGACGCTGGGGCACCAAAGGAGTTACTTGCGA
GCGCTGCCACAGAGACAAGTCGGTGCAGGGAAAACCGGCGATGAGCTCTT
GGTATGGAACAATGGGCGGCGGTGGAGCCTCCTGACCCCAAAGCGGCTGG
AATGGAACATCCGGCATGTAGGTGGGCTGGTCAATGGGATGTGGATGCTG
CATGTCGACTGATAACT
BO01422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6913-PA | 588 | Fer3-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 836 | CG6913-RA | 85..670 | 604..19 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11693576..11694021 | 19..464 | 2230 | 100 | Plus |
| 3R | 32079331 | 3R | 11694088..11694227 | 465..604 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:41:39 has no hits.
BO01422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:53 Download gff for
BO01422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:36 Download gff for
BO01422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6913-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:04 Download gff for
BO01422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..670 | 19..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:17 Download gff for
BO01422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..670 | 19..611 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:17 Download gff for
BO01422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11693576..11694021 | 19..464 | 100 | <- | Plus |
| 3R | 11694088..11694231 | 465..611 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:04 Download gff for
BO01422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7519298..7519743 | 19..464 | 100 | <- | Plus |
| arm_3R | 7519810..7519953 | 465..611 | 97 | | Plus |
BO01422.5prime Sequence
617 bp (616 high quality bases) assembled on 2005-11-30
> BO01422.5prime
GAAGTTATCAGTCGACATGCAGCATCCACATCCCATTGACCAGCCCACCT
ACATGCCGGATGTTCCATTCCAGCCGCTTTGGGGTCAGGAGGCTCCACCG
CCGCCCATTGTTCCATACCAAGAGCTCATCGCCGGTTTTCCCTGCACCGA
CTTGTCTCTGTGGCAGCGCTCGCAAGTAACTCCTTTGGTGCCCCAGCGTC
CGTCGACAAATGGGAGGGCCAACGGCTCCTCCAGCTCCTCGAAGAAAACG
CGTCGCCGTGTGGCATCAATGGCCCAACGGAGAGCTGCAAATATCCGCGA
ACGCCGTCGCATGTTTAACCTAAACGAGGCCTTCGACAAGTTGCGCCGCA
AGGTGCCCACCTTCGCCTACGAGAAACGACTGTCCCGCATCGAAACCCTT
CGCTTGGCCATCACCTACATCGGATTCATGGCTGAGCTGCTGAGCGGCAC
GCCCTCGAACTCCCACAAATCGCGGTCCGACGTCTATGGGAGTATGAATG
GTCACCATCAGGCGCCACCACCGGCAATTCATCCACATCATCTGCATCCG
GCGGCGGCATATCAACGCGATTTCGCTTCGCCCTATAATCATAGTTTGTC
CGCAAGCTTTCTAGACC
BO01422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6913-PA | 588 | Fer3-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 836 | CG6913-RA | 85..670 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11693576..11694021 | 601..156 | 2230 | 100 | Minus |
| 3R | 32079331 | 3R | 11694088..11694227 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:04:20 has no hits.
BO01422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:54 Download gff for
BO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:37 Download gff for
BO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6913-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:21 Download gff for
BO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..670 | 9..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:53 Download gff for
BO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..670 | 9..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:53 Download gff for
BO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11693576..11694021 | 156..601 | 100 | <- | Minus |
| 3R | 11694088..11694231 | 9..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:21 Download gff for
BO01422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7519298..7519743 | 156..601 | 100 | <- | Minus |
| arm_3R | 7519810..7519953 | 9..155 | 97 | | Minus |
BO01422.complete Sequence
619 bp (619 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629491
> BO01422.complete
GAAGTTATCAGTCGACATGCAGCATCCACATCCCATTGACCAGCCCACCT
ACATGCCGGATGTTCCATTCCAGCCGCTTTGGGGTCAGGAGGCTCCACCG
CCGCCCATTGTTCCATACCAAGAGCTCATCGCCGGTTTTCCCTGCACCGA
CTTGTCTCTGTGGCAGCGCTCGCAAGTAACTCCTTTGGTGCCCCAGCGTC
CGTCGACAAATGGGAGGGCCAACGGCTCCTCCAGCTCCTCGAAGAAAACG
CGTCGCCGTGTGGCATCAATGGCCCAACGGAGAGCTGCAAATATCCGCGA
ACGCCGTCGCATGTTTAACCTAAACGAGGCCTTCGACAAGTTGCGCCGCA
AGGTGCCCACCTTCGCCTACGAGAAACGACTGTCCCGCATCGAAACCCTT
CGCTTGGCCATCACCTACATCGGATTCATGGCTGAGCTGCTGAGCGGCAC
GCCCTCGAACTCCCACAAATCGCGGTCCGACGTCTATGGGAGTATGAATG
GTCACCATCAGGCGCCACCACCGGCAATTCATCCACATCATCTGCATCCG
GCGGCGGCATATCAACGCGATTTCGCTTCGCCCTATAATCATAGTTTGTC
CGCAAGCTTTCTAGACCAT
BO01422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 588 | CG6913-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 836 | CG6913-RA | 85..670 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11693576..11694021 | 601..156 | 2230 | 100 | Minus |
| 3R | 32079331 | 3R | 11694088..11694227 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:14:56 has no hits.
BO01422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:37 Download gff for
BO01422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:26 Download gff for
BO01422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 47..636 | 9..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:54 Download gff for
BO01422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 86..670 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:37 Download gff for
BO01422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 47..636 | 9..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:16 Download gff for
BO01422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 86..670 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:16 Download gff for
BO01422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11693574..11694021 | 156..603 | 99 | <- | Minus |
| 3R | 11694088..11694226 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:54 Download gff for
BO01422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7519810..7519948 | 17..155 | 100 | | Minus |
| arm_3R | 7519296..7519743 | 156..603 | 99 | <- | Minus |
BO01422.pep Sequence
Translation from 16 to 619
> BO01422.pep
MQHPHPIDQPTYMPDVPFQPLWGQEAPPPPIVPYQELIAGFPCTDLSLWQ
RSQVTPLVPQRPSTNGRANGSSSSSKKTRRRVASMAQRRAANIRERRRMF
NLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIGFMAELLSGTPSNSH
KSRSDVYGSMNGHHQAPPPAIHPHHLHPAAAYQRDFASPYNHSLSASFLD
H
BO01422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-PA | 195 | CG6913-PA | 1..195 | 1..195 | 1045 | 100 | Plus |
| Fer1-PA | 251 | CG33323-PA | 55..159 | 69..169 | 198 | 41.8 | Plus |
| Fer1-PB | 256 | CG33323-PB | 69..164 | 71..169 | 197 | 44.6 | Plus |
| Fer2-PE | 273 | CG5952-PE | 122..204 | 63..142 | 177 | 50.6 | Plus |
| Fer2-PB | 274 | CG5952-PB | 122..204 | 63..142 | 177 | 50.6 | Plus |
