Clone Sequence Records
BO01424.3prime Sequence
629 bp (628 high quality bases) assembled on 2005-11-30
> BO01424.3prime
ATGGTCTAGAAAGCTTGCCGACTGTCTGCTGTCTTTCTCCGCATTCTGTG
GCGTTGCTAAACTGTTGGACAGTTGCTGCTGTGATTGCAGTTGTTGCTGC
TGCAGTTGCAGTTGCTGCTGCTGCTGATGCTGCTGCGGATGGGCGGGCGC
CACAAGAGTGTTGGGCGTTTGGCGATCGGTAAGCGGGAGACGGGCGGCGG
GACTAGAGACTTTCGCCGGCTGCTCGGCATTCAGGCGCTGGGCGAGGATA
TCTGGATCGACTTCCGCTTCTGCCTCGGCATCCGCATCCTCCATGTCGCT
GTCCTCGTCCTCGTGGAGTCCGTTCACCGCCGTCAGAGCGGCTGCCGCAT
CGAAGTTGCCCATCTCGGGGTGCGTCTCCAGCTCGGTCTGCAGGTCGCAG
ATGTAGTCGATGACGTGCTGGATGATCTCCAGCTTGGTGAGCTTCCTGTT
CTTGGGCATGAACGGAACGAGGTCCTTCAGTTTGGACAGATACATCTTCA
TCTCGGCGTTCTCCCCGTCGCCGCGGTGCGTGGGATGGCGCTGGATGCGC
CCGCTGGCATTCAAGGCCGGCATTCCGGAGGCACCTGTCTGGCAGACGGC
CGTCAGGGACTTCATGTCGACTGATAACT
BO01424.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1007-PA | 600 | emc-RA | 1..597 | 615..19 | 2985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| emc-RA | 2049 | CG1007-RA | 265..861 | 615..19 | 2985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 749664..750227 | 615..52 | 2820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:17:15 has no hits.
BO01424.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:57 Download gff for
BO01424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1007-PA | 1..600 | 15..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:41 Download gff for
BO01424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1007-PA | 1..600 | 15..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:30 Download gff for
BO01424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 261..866 | 13..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:40 Download gff for
BO01424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 261..866 | 13..623 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:40 Download gff for
BO01424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 749660..750227 | 52..623 | 99 | -> | Minus |
| 3L | 752272..752309 | 13..51 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:30 Download gff for
BO01424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 749660..750227 | 52..623 | 99 | -> | Minus |
| arm_3L | 752272..752309 | 13..51 | 94 | | Minus |
BO01424.5prime Sequence
629 bp (628 high quality bases) assembled on 2005-11-30
> BO01424.5prime
GAAGTTATCAGTCGACATGAAGTCCCTGACGGCCGTCTGCCAGACAGGTG
CCTCCGGAATGCCGGCCTTGAATGCCAGCGGGCGCATCCAGCGCCATCCC
ACGCACCGCGGCGACGGGGAGAACGCCGAGATGAAGATGTATCTGTCCAA
ACTGAAGGACCTCGTTCCGTTCATGCCCAAGAACAGGAAGCTCACCAAGC
TGGAGATCATCCAGCACGTCATCGACTACATCTGCGACCTGCAGACCGAG
CTGGAGACGCACCCCGAGATGGGCAACTTCGATGCGGCAGCCGCTCTGAC
GGCGGTGAACGGACTCCACGAGGACGAGGACAGCGACATGGAGGATGCGG
ATGCCGAGGCAGAAGCGGAAGTCGATCCAGATATCCTCGCCCAGCGCCTG
AATGCCGAGCAGCCGGCGAAAGTCTCTAGTCCCGCCGCCCGTCTCCCGCT
TACCGATCGCCAAACGCCCAACACTCTTGTGGCGCCCGCCCATCCGCAGC
AGCATCAGCAGCAGCAGCAACTGCAACTGCAGCAGCAACAACTGCAATCA
CAGCAGCAACTGTCCAACAGTTTAGCAACGCCACAGAATGCGGAGAAAGA
CAGCAGACAGTCGGCAAGCTTTCTAGACC
BO01424.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1007-PA | 600 | emc-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| emc-RA | 2049 | CG1007-RA | 265..861 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 749664..750227 | 17..580 | 2820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:20:54 has no hits.
BO01424.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:58 Download gff for
BO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1007-PA | 1..600 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:42 Download gff for
BO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1007-PA | 1..600 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:38 Download gff for
BO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 261..866 | 9..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:02 Download gff for
BO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 261..866 | 9..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:02 Download gff for
BO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 749660..750227 | 9..580 | 99 | -> | Plus |
| 3L | 752272..752309 | 581..619 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:38 Download gff for
BO01424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 749660..750227 | 9..580 | 99 | -> | Plus |
| arm_3L | 752272..752309 | 581..619 | 94 | | Plus |
BO01424.complete Sequence
631 bp (631 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629492
> BO01424.complete
GAAGTTATCAGTCGACATGAAGTCCCTGACGGCCGTCTGCCAGACAGGTG
CCTCCGGAATGCCGGCCTTGAATGCCAGCGGGCGCATCCAGCGCCATCCC
ACGCACCGCGGCGACGGGGAGAACGCCGAGATGAAGATGTATCTGTCCAA
ACTGAAGGACCTCGTTCCGTTCATGCCCAAGAACAGGAAGCTCACCAAGC
TGGAGATCATCCAGCACGTCATCGACTACATCTGCGACCTGCAGACCGAG
CTGGAGACGCACCCCGAGATGGGCAACTTCGATGCGGCAGCCGCTCTGAC
GGCGGTGAACGGACTCCACGAGGACGAGGACAGCGACATGGAGGATGCGG
ATGCCGAGGCAGAAGCGGAAGTCGATCCAGATATCCTCGCCCAGCGCCTG
AATGCCGAGCAGCCGGCGAAAGTCTCTAGTCCCGCCGCCCGTCTCCCGCT
TACCGATCGCCAAACGCCCAACACTCTTGTGGCGCCCGCCCATCCGCAGC
AGCATCAGCAGCAGCAGCAACTGCAACTGCAGCAGCAACAACTGCAATCA
CAGCAGCAACTGTCCAACAGTTTAGCAACGCCACAGAATGCGGAGAAAGA
CAGCAGACAGTCGGCAAGCTTTCTAGACCAT
BO01424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| emc-RA | 600 | CG1007-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| emc-RA | 2049 | CG1007-RA | 265..861 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 749664..750227 | 17..580 | 2820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:59:59 has no hits.
BO01424.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:13 Download gff for
BO01424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 1..600 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:01 Download gff for
BO01424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 255..860 | 9..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:25 Download gff for
BO01424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 265..861 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:13 Download gff for
BO01424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 255..860 | 9..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:28 Download gff for
BO01424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 265..861 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:28 Download gff for
BO01424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 749664..750227 | 17..580 | 100 | -> | Plus |
| 3L | 752272..752304 | 581..615 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:25 Download gff for
BO01424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 749664..750227 | 17..580 | 100 | -> | Plus |
| arm_3L | 752272..752304 | 581..615 | 94 | | Plus |
BO01424.pep Sequence
Translation from 16 to 631
> BO01424.pep
MKSLTAVCQTGASGMPALNASGRIQRHPTHRGDGENAEMKMYLSKLKDLV
PFMPKNRKLTKLEIIQHVIDYICDLQTELETHPEMGNFDAAAALTAVNGL
HEDEDSDMEDADAEAEAEVDPDILAQRLNAEQPAKVSSPAARLPLTDRQT
PNTLVAPAHPQQHQQQQQLQLQQQQLQSQQQLSNSLATPQNAEKDSRQSA
SFLDH
BO01424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| emc-PA | 199 | CG1007-PA | 1..199 | 1..199 | 1017 | 100 | Plus |
