Clone Sequence Records
BO01427.3prime Sequence
698 bp (697 high quality bases) assembled on 2005-11-30
> BO01427.3prime
ATGGTCTAGAAAGCTTGCGAGCTCGACCCGCGGACGAAACTGCAGCCGAA
GCGGCGGATCCCGGAAGCGCCAGCGCGTCACGTAGACGAACTTCAGCGTG
TGATCCTTGCCGAGCAGCTCCTCGTTGCACAGTATGTCGATCTCTCTGTA
CTTTTCGATGCCGTTGAGGATCTTCTTGGCCACCAGCTTCTTGAGATGCG
TTATCGTCGCCTGCGAGCTGCAGCGAATGAATCGCCTCTGCAGGTTCTTG
AAGTTATTGCTAATGCACTCCAGGCACACGTTCACCTGCTCGTCCAGGCG
ATGGAAGTCGGACTCGGCGTGGGCGTCCATCACCTTCTCGTTGTCGTCCT
CGTGGTTCTGCGTGATATCCTTGGGACACGGCATGTTCCTGCTCTTGTAG
AAGTCCCGCTCTCGGCGCGATTCATCTTCTTGCAGTTTCGGCACCAGTTT
GTACACAATGTCCTGCATGGTGCGATCGAAGCTGATGTATTGCAGGGGAT
GGGACTGATGGATGATGTTGTCGCAGGTGGGGCAGGTCTTCTTCTCCTCC
AGGTGCTTCACCAGGCAACTCTTGCAAAATGTGTGCAGACACTCCGTCAC
CGTGGTGGCATCGATGAAGTAGCCGCCGCAGATCTTGCACGTTATGTGCG
GATTGATCGTCTTCAGCTTCACGCGCCGCTCCATGTCGACTGATAACT
BO01427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4195-PA | 669 | l(3)73Ah-RA | 1..666 | 684..19 | 3330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)73Ah-RA | 1404 | CG4195-RA | 377..1043 | 685..19 | 3335 | 100 | Minus |
l(3)73Ah-RB | 1322 | CG4195-RB | 295..961 | 685..19 | 3335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16589245..16589530 | 427..142 | 1430 | 100 | Minus |
3L | 28110227 | 3L | 16589016..16589172 | 582..426 | 770 | 99.4 | Minus |
3L | 28110227 | 3L | 16589647..16589771 | 143..19 | 625 | 100 | Minus |
3L | 28110227 | 3L | 16588851..16588957 | 685..579 | 535 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 16:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 8763..8803 | 287..327 | 115 | 75.6 | Plus |
BO01427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:29:59 Download gff for
BO01427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4195-PA | 1..669 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:44 Download gff for
BO01427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4195-PA | 1..669 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:16 Download gff for
BO01427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 295..964 | 15..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:22:49 Download gff for
BO01427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 295..964 | 15..685 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:22:49 Download gff for
BO01427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16588851..16588957 | 579..685 | 100 | -> | Minus |
3L | 16589020..16589172 | 426..578 | 100 | -> | Minus |
3L | 16589247..16589530 | 142..425 | 100 | -> | Minus |
3L | 16589649..16589774 | 15..141 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:16 Download gff for
BO01427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16581951..16582057 | 579..685 | 100 | -> | Minus |
arm_3L | 16582120..16582272 | 426..578 | 100 | -> | Minus |
arm_3L | 16582347..16582630 | 142..425 | 100 | -> | Minus |
arm_3L | 16582749..16582874 | 15..141 | 98 | | Minus |
BO01427.5prime Sequence
698 bp (697 high quality bases) assembled on 2005-11-30
> BO01427.5prime
GAAGTTATCAGTCGACATGGAGCGGCGCGTGAAGCTGAAGACGATCAATC
CGCACATAACGTGCAAGATCTGCGGCGGCTACTTCATCGATGCCACCACG
GTGACGGAGTGTCTGCACACATTTTGCAAGAGTTGCCTGGTGAAGCACCT
GGAGGAGAAGAAGACCTGCCCCACCTGCGACAACATCATCCATCAGTCCC
ATCCCCTGCAATACATCAGCTTCGATCGCACCATGCAGGACATTGTGTAC
AAACTGGTGCCGAAACTGCAAGAAGATGAATCGCGCCGAGAGCGGGACTT
CTACAAGAGCAGGAACATGCCGTGTCCCAAGGATATCACGCAGAACCACG
AGGACGACAACGAGAAGGTGATGGACGCCCACGCCGAGTCCGACTTCCAT
CGCCTGGACGAGCAGGTGAACGTGTGCCTGGAGTGCATTAGCAATAACTT
CAAGAACCTGCAGAGGCGATTCATTCGCTGCAGCTCGCAGGCGACGATAA
CGCATCTCAAGAAGCTGGTGGCCAAGAAGATCCTCAACGGCATCGAAAAG
TACAGAGAGATCGACATACTGTGCAACGAGGAGCTGCTCGGCAAGGATCA
CACGCTGAAGTTCGTCTACGTGACGCGCTGGCGCTTCCGGGATCCGCCGC
TTCGGCTGCAGTTTCGTCCGCGGGTCGAGCTCGCAAGCTTTCTAGACC
BO01427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4195-PA | 669 | l(3)73Ah-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)73Ah-RA | 1404 | CG4195-RA | 377..1043 | 16..682 | 3335 | 100 | Plus |
l(3)73Ah-RB | 1322 | CG4195-RB | 295..961 | 16..682 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16589245..16589530 | 274..559 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16589016..16589172 | 119..275 | 770 | 99.4 | Plus |
3L | 28110227 | 3L | 16589647..16589771 | 558..682 | 625 | 100 | Plus |
3L | 28110227 | 3L | 16588851..16588957 | 16..122 | 535 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 8763..8803 | 414..374 | 115 | 75.6 | Minus |
BO01427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:00 Download gff for
BO01427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4195-PA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:45 Download gff for
BO01427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4195-PA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:09 Download gff for
BO01427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 295..964 | 16..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:24 Download gff for
BO01427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 295..964 | 16..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:24 Download gff for
BO01427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16589649..16589774 | 560..686 | 98 | | Plus |
3L | 16588851..16588957 | 16..122 | 100 | -> | Plus |
3L | 16589020..16589172 | 123..275 | 100 | -> | Plus |
3L | 16589247..16589530 | 276..559 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:09 Download gff for
BO01427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16581951..16582057 | 16..122 | 100 | -> | Plus |
arm_3L | 16582120..16582272 | 123..275 | 100 | -> | Plus |
arm_3L | 16582347..16582630 | 276..559 | 100 | -> | Plus |
arm_3L | 16582749..16582874 | 560..686 | 98 | | Plus |
BO01427.complete Sequence
700 bp (700 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629493
> BO01427.complete
GAAGTTATCAGTCGACATGGAGCGGCGCGTGAAGCTGAAGACGATCAATC
CGCACATAACGTGCAAGATCTGCGGCGGCTACTTCATCGATGCCACCACG
GTGACGGAGTGTCTGCACACATTTTGCAAGAGTTGCCTGGTGAAGCACCT
GGAGGAGAAGAAGACCTGCCCCACCTGCGACAACATCATCCATCAGTCCC
ATCCCCTGCAATACATCAGCTTCGATCGCACCATGCAGGACATTGTGTAC
AAACTGGTGCCGAAACTGCAAGAAGATGAATCGCGCCGAGAGCGGGACTT
CTACAAGAGCAGGAACATGCCGTGTCCCAAGGATATCACGCAGAACCACG
AGGACGACAACGAGAAGGTGATGGACGCCCACGCCGAGTCCGACTTCCAT
CGCCTGGACGAGCAGGTGAACGTGTGCCTGGAGTGCATTAGCAATAACTT
CAAGAACCTGCAGAGGCGATTCATTCGCTGCAGCTCGCAGGCGACGATAA
CGCATCTCAAGAAGCTGGTGGCCAAGAAGATCCTCAACGGCATCGAAAAG
TACAGAGAGATCGACATACTGTGCAACGAGGAGCTGCTCGGCAAGGATCA
CACGCTGAAGTTCGTCTACGTGACGCGCTGGCGCTTCCGGGATCCGCCGC
TTCGGCTGCAGTTTCGTCCGCGGGTCGAGCTCGCAAGCTTTCTAGACCAT
BO01427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)73Ah-RA | 669 | CG4195-PA | 1..666 | 17..682 | 3330 | 100 | Plus |
l(3)73Ah-RB | 669 | CG4195-PB | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)73Ah-RA | 1404 | CG4195-RA | 377..1043 | 16..682 | 3335 | 100 | Plus |
l(3)73Ah-RB | 1322 | CG4195-RB | 295..961 | 16..682 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16589245..16589530 | 274..559 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16589016..16589172 | 119..275 | 770 | 99.4 | Plus |
3L | 28110227 | 3L | 16589647..16589771 | 558..682 | 625 | 100 | Plus |
3L | 28110227 | 3L | 16588851..16588957 | 16..122 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 8763..8803 | 414..374 | 115 | 75.6 | Minus |
BO01427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:14 Download gff for
BO01427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:03 Download gff for
BO01427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RA | 935..1604 | 16..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:31 Download gff for
BO01427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 296..961 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:15 Download gff for
BO01427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RA | 935..1604 | 16..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:14 Download gff for
BO01427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 296..961 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:14 Download gff for
BO01427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16588852..16588957 | 17..122 | 100 | -> | Plus |
3L | 16589020..16589172 | 123..275 | 100 | -> | Plus |
3L | 16589247..16589530 | 276..559 | 100 | -> | Plus |
3L | 16589649..16589771 | 560..684 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:31 Download gff for
BO01427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16582347..16582630 | 276..559 | 100 | -> | Plus |
arm_3L | 16582749..16582871 | 560..684 | 98 | | Plus |
arm_3L | 16581952..16582057 | 17..122 | 100 | -> | Plus |
arm_3L | 16582120..16582272 | 123..275 | 100 | -> | Plus |
BO01427.pep Sequence
Translation from 16 to 700
> BO01427.pep
MERRVKLKTINPHITCKICGGYFIDATTVTECLHTFCKSCLVKHLEEKKT
CPTCDNIIHQSHPLQYISFDRTMQDIVYKLVPKLQEDESRRERDFYKSRN
MPCPKDITQNHEDDNEKVMDAHAESDFHRLDEQVNVCLECISNNFKNLQR
RFIRCSSQATITHLKKLVAKKILNGIEKYREIDILCNEELLGKDHTLKFV
YVTRWRFRDPPLRLQFRPRVELASFLDH
BO01427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)73Ah-PA | 222 | CG4195-PA | 1..222 | 1..222 | 1202 | 100 | Plus |
l(3)73Ah-PB | 222 | CG4195-PB | 1..222 | 1..222 | 1202 | 100 | Plus |
Psc-PC | 1601 | CG3886-PC | 250..465 | 3..217 | 333 | 35 | Plus |
Psc-PB | 1601 | CG3886-PB | 250..465 | 3..217 | 333 | 35 | Plus |
Psc-PA | 1601 | CG3886-PA | 250..465 | 3..217 | 333 | 35 | Plus |