Clone Sequence Records
BO01430.3prime Sequence
704 bp (703 high quality bases) assembled on 2005-11-30
> BO01430.3prime
ATGGTCTAGAAAGCTTGCCGTCTTGCGAAAACTTAGTAAAATAGGTGATA
TCGCCTCCAGGCAGTCCATAATGTCCTTGCGCGACTTGGCGCCCGTAAAT
ACAACCTTTCCGTTGACGAAGATCAGGAGAACGATGCGCGGCTTGACCAT
GCGATAGATTAGGCCTGGAAACATCTCCGGTTCGTAGGAACTAAACTGCC
CGTGCACGTGGTTGAGGTTCTCCAGGCGGATGGGGAAGCGCAGATCAACG
GTGGCCACAATATTCTGCAGCTTGTATTCCATGAACTTTACGGGGAATCC
CAGCTTCTGCAGGATGCGTGCGAACTTTCGCGATCCAATGTCCGCCTCAA
TCTCGTTTCGTGCACCCGTGCAGATGACCTTGCCCGTTCGAAAGATTAGC
GCTGTGCACCTGGGCGAGTGCATTCGCATGATGACGCCACGAAAGCGCTT
GGGCGAGTACTCCGAGTTCCTCGTACGCGAGTTGATTGCCTTGAGGTCCA
GTTCACAGTTCACCGAGAAGGTGGCCACGATATTCTGCAATCGTATCTCA
TGTTGTGCATCCTTGGGCTCCACCAGGGCAACGGGCTGTTGCGGCTGCAG
GGCTGCGTGCGGATTGGCGGCAGCATTGCTGGTCGCAGCCACATTATCCC
TGTCCCTTTCAGCGTCCGCGACTTTAAAGTGAAACTGCATGTCGACTGAT
AACT
BO01430.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7562-PA | 675 | Trf-RA | 1..672 | 690..19 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf-RA | 983 | CG7562-RA | 77..748 | 690..19 | 3360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8073197..8073713 | 535..19 | 2585 | 100 | Minus |
2L | 23513712 | 2L | 8072971..8073126 | 690..535 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 18:53:17 has no hits.
BO01430.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:03 Download gff for
BO01430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-PA | 1..675 | 18..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:49 Download gff for
BO01430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7562-PA | 1..675 | 18..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:12:05 Download gff for
BO01430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 71..753 | 11..699 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:27:14 Download gff for
BO01430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 71..753 | 11..699 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:27:14 Download gff for
BO01430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8072965..8073125 | 536..699 | 97 | -> | Minus |
2L | 8073197..8073718 | 11..535 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:12:05 Download gff for
BO01430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8072965..8073125 | 536..699 | 97 | -> | Minus |
arm_2L | 8073197..8073718 | 11..535 | 99 | | Minus |
BO01430.5prime Sequence
704 bp (703 high quality bases) assembled on 2005-11-30
> BO01430.5prime
GAAGTTATCAGTCGACATGCAGTTTCACTTTAAAGTCGCGGACGCTGAAA
GGGACAGGGATAATGTGGCTGCGACCAGCAATGCTGCCGCCAATCCGCAC
GCAGCCCTGCAGCCGCAACAGCCCGTTGCCCTGGTGGAGCCCAAGGATGC
ACAACATGAGATACGATTGCAGAATATCGTGGCCACCTTCTCGGTGAACT
GTGAACTGGACCTCAAGGCAATCAACTCGCGTACGAGGAACTCGGAGTAC
TCGCCCAAGCGCTTTCGTGGCGTCATCATGCGAATGCACTCGCCCAGGTG
CACAGCGCTAATCTTTCGAACGGGCAAGGTCATCTGCACGGGTGCACGAA
ACGAGATTGAGGCGGACATTGGATCGCGAAAGTTCGCACGCATCCTGCAG
AAGCTGGGATTCCCCGTAAAGTTCATGGAATACAAGCTGCAGAATATTGT
GGCCACCGTTGATCTGCGCTTCCCCATCCGCCTGGAGAACCTCAACCACG
TGCACGGGCAGTTTAGTTCCTACGAACCGGAGATGTTTCCAGGCCTAATC
TATCGCATGGTCAAGCCGCGCATCGTTCTCCTGATCTTCGTCAACGGAAA
GGTTGTATTTACGGGCGCCAAGTCGCGCAAGGACATTATGGACTGCCTGG
AGGCGATATCACCTATTTTACTAAGTTTTCGCAAGACGGCAAGCTTTCTA
GACC
BO01430.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7562-PA | 675 | Trf-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf-RA | 983 | CG7562-RA | 77..748 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8073197..8073713 | 172..688 | 2585 | 100 | Plus |
2L | 23513712 | 2L | 8072971..8073126 | 17..172 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:21:40 has no hits.
BO01430.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:04 Download gff for
BO01430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-PA | 1..675 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:50 Download gff for
BO01430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7562-PA | 1..675 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:24 Download gff for
BO01430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 71..753 | 8..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:47 Download gff for
BO01430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 71..753 | 8..696 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:47 Download gff for
BO01430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8072965..8073125 | 8..171 | 97 | -> | Plus |
2L | 8073197..8073718 | 172..696 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:24 Download gff for
BO01430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8072965..8073125 | 8..171 | 97 | -> | Plus |
arm_2L | 8073197..8073718 | 172..696 | 99 | | Plus |
BO01430.complete Sequence
706 bp (706 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629494
> BO01430.complete
GAAGTTATCAGTCGACATGCAGTTTCACTTTAAAGTCGCGGACGCTGAAA
GGGACAGGGATAATGTGGCTGCGACCAGCAATGCTGCCGCCAATCCGCAC
GCAGCCCTGCAGCCGCAACAGCCCGTTGCCCTGGTGGAGCCCAAGGATGC
ACAACATGAGATACGATTGCAGAATATCGTGGCCACCTTCTCGGTGAACT
GTGAACTGGACCTCAAGGCAATCAACTCGCGTACGAGGAACTCGGAGTAC
TCGCCCAAGCGCTTTCGTGGCGTCATCATGCGAATGCACTCGCCCAGGTG
CACAGCGCTAATCTTTCGAACGGGCAAGGTCATCTGCACGGGTGCACGAA
ACGAGATTGAGGCGGACATTGGATCGCGAAAGTTCGCACGCATCCTGCAG
AAGCTGGGATTCCCCGTAAAGTTCATGGAATACAAGCTGCAGAATATTGT
GGCCACCGTTGATCTGCGCTTCCCCATCCGCCTGGAGAACCTCAACCACG
TGCACGGGCAGTTTAGTTCCTACGAACCGGAGATGTTTCCAGGCCTAATC
TATCGCATGGTCAAGCCGCGCATCGTTCTCCTGATCTTCGTCAACGGAAA
GGTTGTATTTACGGGCGCCAAGTCGCGCAAGGACATTATGGACTGCCTGG
AGGCGATATCACCTATTTTACTAAGTTTTCGCAAGACGGCAAGCTTTCTA
GACCAT
BO01430.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf-RA | 675 | CG7562-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf-RA | 983 | CG7562-RA | 77..748 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8073197..8073713 | 172..688 | 2585 | 100 | Plus |
2L | 23513712 | 2L | 8072971..8073126 | 17..172 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:38:38 has no hits.
BO01430.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:17 Download gff for
BO01430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 1..675 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:04 Download gff for
BO01430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 69..751 | 8..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:30 Download gff for
BO01430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 77..748 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:17 Download gff for
BO01430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 69..751 | 8..696 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:44 Download gff for
BO01430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf-RA | 77..748 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:44 Download gff for
BO01430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8072971..8073125 | 17..171 | 100 | -> | Plus |
2L | 8073197..8073713 | 172..690 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:30 Download gff for
BO01430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8072971..8073125 | 17..171 | 100 | -> | Plus |
arm_2L | 8073197..8073713 | 172..690 | 99 | | Plus |
BO01430.pep Sequence
Translation from 16 to 706
> BO01430.pep
MQFHFKVADAERDRDNVAATSNAAANPHAALQPQQPVALVEPKDAQHEIR
LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIF
RTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDL
RFPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTG
AKSRKDIMDCLEAISPILLSFRKTASFLDH
BO01430.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf-PA | 224 | CG7562-PA | 1..224 | 1..224 | 1146 | 100 | Plus |
Tbp-PA | 353 | CG9874-PA | 148..351 | 22..223 | 586 | 55.9 | Plus |
Trf2-PJ | 632 | CG18009-PJ | 157..379 | 1..226 | 333 | 33.8 | Plus |
Trf2-PH | 632 | CG18009-PH | 157..379 | 1..226 | 333 | 33.8 | Plus |
Trf2-PI | 1714 | CG18009-PI | 1239..1461 | 1..226 | 333 | 33.8 | Plus |