Clone Sequence Records
BO01432.3prime Sequence
704 bp (703 high quality bases) assembled on 2005-11-30
> BO01432.3prime
ATGGTCTAGAAAGCTTGCCCAGGGCCTCCAGACGGGCTCAGAGGCGCCGG
ACTCCTGCGAGCTAACCGACGCCGTCTCGGATAACGCATTGCCATCGACG
GATGTCACATCGATCAGTTCGTCCTTGCTGGTCAGGAAGGAGCTGTAACT
AATGGCGGCAGCGGCGGCTGCCGGTCCATATCCTCCCAGCAGCGGGAAGG
CTAGGCGGCCTGATGATTGCGGTATTTGCTGCTGCTGGTGTTGTTGCTGT
TGCTGCTGCTGCTGGAGCAACTGCGTCTGCAGCTCAATTAGTCGCGTCGA
TAGGAATTTCATTATCTTGCGCCCAATCTCATCGGTTTGCTGTGTCTGCA
GCAGGACCTGGGTAATCTGATCGGCAGCATGCACATAGCCGGAGCGAAAG
GACTCCACGTGGGCGGTACTGGTTGAGGTGGGTGGGCTGCCAACACCAGC
CACTACTCCCTGCAGCGAAAGACCACCCCGCTGCTTGAGTTTCCTCATGT
GATCCACGGTCAACTCCAGGATATCCGCCTTCTCCAGCCGGGTGACGTGC
TCGCCCTCCTGCTGCAGGCACTCCACCATCAGATCCTTGAGATCGTCCAG
ACACTTGTTGATCCTGGCTCGCCGTTTGCGCTCCAGCAGCGGCTTCATCA
CCTTGCGGTACTGATACGTCTTGGACATCTCCATGACCATGTCGACTGAT
AACT
BO01432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8346-PA | 675 | HLHm3-RA | 1..672 | 690..19 | 3360 | 100 | Minus |
CG14548-PA | 588 | HLHmbeta-RA | 13..113 | 684..584 | 255 | 90 | Minus |
CG8361-PA | 561 | HLHm7-RA | 31..121 | 666..576 | 255 | 91.2 | Minus |
CG14548-PA | 588 | HLHmbeta-RA | 136..202 | 561..495 | 210 | 92.5 | Minus |
CG8333-PA | 618 | HLHmgamma-RA | 22..62 | 681..641 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 197..869 | 691..19 | 3365 | 100 | Minus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 143..336 | 684..491 | 640 | 88.7 | Minus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..280 | 681..515 | 430 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26022019..26022691 | 691..19 | 3365 | 100 | Minus |
3R | 32079331 | 3R | 26005688..26005881 | 491..684 | 640 | 88.7 | Plus |
3R | 32079331 | 3R | 25999964..26000130 | 681..515 | 430 | 83.8 | Minus |
3R | 32079331 | 3R | 26037178..26037291 | 681..568 | 375 | 88.6 | Minus |
3R | 32079331 | 3R | 25997756..25997928 | 678..506 | 235 | 75.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:20:28 has no hits.
BO01432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:06 Download gff for
BO01432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-PA | 1..675 | 15..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:55 Download gff for
BO01432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8346-PA | 1..675 | 15..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:34:57 Download gff for
BO01432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..874 | 11..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:28 Download gff for
BO01432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..874 | 11..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:28 Download gff for
BO01432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26022011..26022690 | 20..698 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:34:57 Download gff for
BO01432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21847733..21848412 | 20..698 | 99 | -> | Minus |
BO01432.5prime Sequence
704 bp (703 high quality bases) assembled on 2005-11-30
> BO01432.5prime
GAAGTTATCAGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACC
GCAAGGTGATGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAAC
AAGTGTCTGGACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGA
GGGCGAGCACGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCG
TGGATCACATGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGA
GTAGTGGCTGGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGT
GGAGTCCTTTCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGG
TCCTGCTGCAGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAA
TTCCTATCGACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCA
GCAGCAACAGCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCC
GCCTAGCCTTCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCC
GCCATTAGTTACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGT
GACATCCGTCGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGC
AGGAGTCCGGCGCCTCTGAGCCCGTCTGGAGGCCCTGGGCAAGCTTTCTA
GACC
BO01432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8346-PA | 675 | HLHm3-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 13..113 | 23..123 | 255 | 90 | Plus |
CG8361-PA | 561 | HLHm7-RA | 31..121 | 41..131 | 255 | 91.2 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 136..202 | 146..212 | 210 | 92.5 | Plus |
CG8333-PA | 618 | HLHmgamma-RA | 22..62 | 26..66 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 197..869 | 16..688 | 3365 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 143..336 | 23..216 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..280 | 26..192 | 430 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26022019..26022691 | 16..688 | 3365 | 100 | Plus |
3R | 32079331 | 3R | 26005688..26005881 | 216..23 | 640 | 88.7 | Minus |
3R | 32079331 | 3R | 25999964..26000130 | 26..192 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037178..26037291 | 26..139 | 375 | 88.6 | Plus |
3R | 32079331 | 3R | 25997756..25997928 | 29..201 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:37:32 has no hits.
BO01432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:07 Download gff for
BO01432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-PA | 1..675 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:27:57 Download gff for
BO01432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8346-PA | 1..675 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:34:42 Download gff for
BO01432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..874 | 9..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:38 Download gff for
BO01432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..874 | 9..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:38 Download gff for
BO01432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26022011..26022690 | 9..687 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:34:42 Download gff for
BO01432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21847733..21848412 | 9..687 | 99 | -> | Plus |
BO01432.complete Sequence
706 bp (706 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629495
> BO01432.complete
GAAGTTATCAGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACC
GCAAGGTGATGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAAC
AAGTGTCTGGACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGA
GGGCGAGCACGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCG
TGGATCACATGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGA
GTAGTGGCTGGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGT
GGAGTCCTTTCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGG
TCCTGCTGCAGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAA
TTCCTATCGACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCA
GCAGCAACAGCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCC
GCCTAGCCTTCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCC
GCCATTAGTTACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGT
GACATCCGTCGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGC
AGGAGTCCGGCGCCTCTGAGCCCGTCTGGAGGCCCTGGGCAAGCTTTCTA
GACCAT
BO01432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 675 | CG8346-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
E(spl)mbeta-HLH-RA | 588 | CG14548-PA | 13..206 | 23..216 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 618 | CG8333-PA | 22..188 | 26..192 | 430 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 197..869 | 16..688 | 3365 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 143..336 | 23..216 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..280 | 26..192 | 430 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26022019..26022691 | 16..688 | 3365 | 100 | Plus |
3R | 32079331 | 3R | 26005688..26005881 | 216..23 | 640 | 88.7 | Minus |
3R | 32079331 | 3R | 25999964..26000130 | 26..192 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037178..26037291 | 26..139 | 375 | 88.6 | Plus |
3R | 32079331 | 3R | 25997756..25997928 | 29..201 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:21 has no hits.
BO01432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:18 Download gff for
BO01432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-RA | 1..675 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:06 Download gff for
BO01432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-RA | 297..982 | 9..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:00 Download gff for
BO01432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 198..869 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:18 Download gff for
BO01432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-RA | 297..982 | 9..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:19 Download gff for
BO01432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 198..869 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:19 Download gff for
BO01432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26022020..26022691 | 17..690 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:00 Download gff for
BO01432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21847742..21848413 | 17..690 | 99 | | Plus |
BO01432.pep Sequence
Translation from 16 to 706
> BO01432.pep
MVMEMSKTYQYRKVMKPLLERKRRARINKCLDDLKDLMVECLQQEGEHVT
RLEKADILELTVDHMRKLKQRGGLSLQGVVAGVGSPPTSTSTAHVESFRS
GYVHAADQITQVLLQTQQTDEIGRKIMKFLSTRLIELQTQLLQQQQQQQQ
HQQQQIPQSSGRLAFPLLGGYGPAAAAAAISYSSFLTSKDELIDVTSVDG
NALSETASVSSQESGASEPVWRPWASFLDH
BO01432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 1..224 | 1..224 | 1125 | 100 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 5..195 | 3..224 | 422 | 45.5 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 8..205 | 4..224 | 353 | 42 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 6..186 | 4..224 | 323 | 38.5 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 9..136 | 5..140 | 252 | 42.3 | Plus |