Clone Sequence Records
BO01434.3prime Sequence
779 bp (778 high quality bases) assembled on 2005-11-30
> BO01434.3prime
ATGGTCTAGAAAGCTTGCCTTGCTCTTCTTTTCGGGCGGTGGCTTCATGT
CCACACCCTCGGTTTTGATATCTAGCGGTCCTGTGGCATTGTTCATTTCG
GAGGCATTTCTCGCTGTGTTCAGATCATCGCCCGCTGGTGGCGGCTGCTG
GAGATTCTGCAGCATGGGCGGTATTGGTGGGGGAAATTTACGCAAAAGCT
CTGCCAGCAGCATGTCCACACGCTGCTTCTGGAACAGTGTGCCGCTGTTC
TCATCCTTCGCTGAGTTGGCGTCCTTCTTATCTGACTTGGATCTATCTGA
AAAAACTTTATTGGAAGAGAAGTCCCACGTGTAGCCCTTGTTGGGATGGT
AGCGGGCATAGCTACTAGCCTCCTCGAAGGCGGATTGCAGGTTCACCACG
GTGTTGAGAATGCGGGAATTGATGACGTTGGCAAGATCTGGCGCCTTGTA
GACGGTGCCACCAATGATGTAGTAATCGGCAATCGGCGTGGCTTCCGAGG
GATTATGACGGTGCTGCTTGCGGATTACATACAGGATGGGCTCCGCCACG
TGCAGCAGTATGTATTCCAGACCGATCATGTTGTGCAGATGCTCGGGACC
AAGGCGCTGCATCCGAACAGTCTCGTTGTTGCACATGTGATCATAGAAGG
GATTCGACTTGCGGCAGAAGTAGTCCATGACGGTCTGCGGGCTGAGGGTG
GCCATCATCTGGGTGTCGTGCCAGGAAAGGCGCANGTGGTCATTGGTCAT
CTGTCGGCTGGCCATGTCGACTGATAACT
BO01434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9473-PB | 750 | MED6-RB | 1..747 | 765..19 | 3716 | 99.8 | Minus |
CG9473-PA | 750 | MED6-RA | 1..747 | 765..19 | 3716 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-RE | 1617 | CG9473-RE | 458..1204 | 765..19 | 3724 | 99.9 | Minus |
MED6-RD | 1814 | CG9473-RD | 655..1401 | 765..19 | 3724 | 99.9 | Minus |
MED6-RC | 1770 | CG9473-RC | 611..1357 | 765..19 | 3724 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9766444..9766727 | 19..302 | 1420 | 100 | Plus |
3R | 32079331 | 3R | 9767177..9767358 | 584..765 | 899 | 99.5 | Plus |
3R | 32079331 | 3R | 9766948..9767122 | 409..583 | 875 | 100 | Plus |
3R | 32079331 | 3R | 9766788..9766893 | 303..408 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 18:53:30 has no hits.
BO01434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:10 Download gff for
BO01434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-PA | 1..750 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:00 Download gff for
BO01434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9473-PA | 1..750 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:12:06 Download gff for
BO01434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 603..1357 | 19..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:27:15 Download gff for
BO01434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 603..1357 | 19..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:27:15 Download gff for
BO01434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9766444..9766727 | 19..302 | 100 | <- | Plus |
3R | 9766788..9766893 | 303..408 | 100 | <- | Plus |
3R | 9766948..9767122 | 409..583 | 100 | <- | Plus |
3R | 9767177..9767366 | 584..773 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:12:06 Download gff for
BO01434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5592166..5592449 | 19..302 | 100 | <- | Plus |
arm_3R | 5592510..5592615 | 303..408 | 100 | <- | Plus |
arm_3R | 5592670..5592844 | 409..583 | 100 | <- | Plus |
arm_3R | 5592899..5593088 | 584..773 | 97 | | Plus |
BO01434.5prime Sequence
779 bp (680 high quality bases) assembled on 2005-11-30
> BO01434.5prime
GAAGTTATCAGTCGACATGGCCAGCCGACAGATGACCAATGACCACCTGC
GCCTTTCCTGGCACGACACCCAGATGATGGCCACCCTCAGCCCGCAGACC
GTCATGGACTACTTCTGCCGCAAGTCGAATCCCTTCTATGATCACATGTG
CAACAACGAGACTGTTCGGATGCAGCGCCTTGGTCCCGAGCATCTGCACA
ACATGATCGGTCTGGAATACATACTGCTGCACGTGGCGGAGCCCATCCTG
TATGTAATCCGCAAGCAGCACCGTCATAATCCCTCGGAAGCCACGCCGAT
TGCCGATTACTACATCATTGGTGGCACCGTCTACAAGGCGCCAGATCTTG
CCAACGTCATCAATTCCCGCATTCTCAACACCGTGGTGAACCTGCAATCC
GCCTTCGAGGAGGCTAGTAGCTATGCCCGCTACCATCCCAACAAGGGCTA
CACGTGGGACTTCTCTTCCAATAAAGTTTTTTCAGATAGATCCAAGTCAG
ATAAGAAGGACGCCAACTCAGCGAAGGATGAGAACAGCGGCACACTGTTC
CAGAAGCAGCGTGTGGACATGCTGCTGGCAGAGCTTTTGCGTAAATTTCC
CCCACCAATACCGCCCATGCTGCAGAATCTCCAGCAGCCGCCACCAGCGG
GCGATGATCTGAACACAGCGAGAAATGCCTCCGAAATGAACAATGCCACA
GGACCGCTAGATATCAAAACCGAGGGTGTGGACATGAAGCCACCGCCCGA
AAAGAAGAGCAAGGCAAGCTTTCTAGACC
BO01434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9473-PB | 750 | MED6-RB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG9473-PA | 750 | MED6-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-RE | 1617 | CG9473-RE | 458..1204 | 17..763 | 3735 | 100 | Plus |
MED6-RD | 1814 | CG9473-RD | 655..1401 | 17..763 | 3735 | 100 | Plus |
MED6-RC | 1770 | CG9473-RC | 611..1357 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9766444..9766727 | 763..480 | 1420 | 100 | Minus |
3R | 32079331 | 3R | 9767177..9767358 | 198..17 | 910 | 100 | Minus |
3R | 32079331 | 3R | 9766948..9767122 | 373..199 | 875 | 100 | Minus |
3R | 32079331 | 3R | 9766788..9766893 | 479..374 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:21:43 has no hits.
BO01434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:11 Download gff for
BO01434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-PA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:02 Download gff for
BO01434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9473-PA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:42 Download gff for
BO01434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 603..1357 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:31 Download gff for
BO01434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 603..1357 | 9..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:31 Download gff for
BO01434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9766788..9766893 | 374..479 | 100 | <- | Minus |
3R | 9766948..9767122 | 199..373 | 100 | <- | Minus |
3R | 9767177..9767366 | 9..198 | 98 | | Minus |
3R | 9766444..9766727 | 480..763 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:42 Download gff for
BO01434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5592166..5592449 | 480..763 | 100 | <- | Minus |
arm_3R | 5592510..5592615 | 374..479 | 100 | <- | Minus |
arm_3R | 5592670..5592844 | 199..373 | 100 | <- | Minus |
arm_3R | 5592899..5593088 | 9..198 | 98 | | Minus |
BO01434.complete Sequence
781 bp (781 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629496
> BO01434.complete
GAAGTTATCAGTCGACATGGCCAGCCGACAGATGACCAATGACCACCTGC
GCCTTTCCTGGCACGACACCCAGATGATGGCCACCCTCAGCCCGCAGACC
GTCATGGACTACTTCTGCCGCAAGTCGAATCCCTTCTATGATCACATGTG
CAACAACGAGACTGTTCGGATGCAGCGCCTTGGTCCCGAGCATCTGCACA
ACATGATCGGTCTGGAATACATACTGCTGCACGTGGCGGAGCCCATCCTG
TATGTAATCCGCAAGCAGCACCGTCATAATCCCTCGGAAGCCACGCCGAT
TGCCGATTACTACATCATTGGTGGCACCGTCTACAAGGCGCCAGATCTTG
CCAACGTCATCAATTCCCGCATTCTCAACACCGTGGTGAACCTGCAATCC
GCCTTCGAGGAGGCTAGTAGCTATGCCCGCTACCATCCCAACAAGGGCTA
CACGTGGGACTTCTCTTCCAATAAAGTTTTTTCAGATAGATCCAAGTCAG
ATAAGAAGGACGCCAACTCAGCGAAGGATGAGAACAGCGGCACACTGTTC
CAGAAGCAGCGTGTGGACATGCTGCTGGCAGAGCTTTTGCGTAAATTTCC
CCCACCAATACCGCCCATGCTGCAGAATCTCCAGCAGCCGCCACCAGCGG
GCGATGATCTGAACACAGCGAGAAATGCCTCCGAAATGAACAATGCCACA
GGACCGCTAGATATCAAAACCGAGGGTGTGGACATGAAGCCACCGCCCGA
AAAGAAGAGCAAGGCAAGCTTTCTAGACCAT
BO01434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-RE | 750 | CG9473-PE | 1..747 | 17..763 | 3735 | 100 | Plus |
MED6-RD | 750 | CG9473-PD | 1..747 | 17..763 | 3735 | 100 | Plus |
MED6-RC | 750 | CG9473-PC | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-RE | 1617 | CG9473-RE | 458..1204 | 17..763 | 3735 | 100 | Plus |
MED6-RD | 1814 | CG9473-RD | 655..1401 | 17..763 | 3735 | 100 | Plus |
MED6-RC | 1770 | CG9473-RC | 611..1357 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9766444..9766727 | 763..480 | 1420 | 100 | Minus |
3R | 32079331 | 3R | 9767177..9767358 | 198..17 | 910 | 100 | Minus |
3R | 32079331 | 3R | 9766948..9767122 | 373..199 | 875 | 100 | Minus |
3R | 32079331 | 3R | 9766788..9766893 | 479..374 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:26:22 has no hits.
BO01434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:20 Download gff for
BO01434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:07 Download gff for
BO01434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RA | 628..1382 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:04 Download gff for
BO01434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 611..1357 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:20 Download gff for
BO01434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RA | 628..1382 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:05 Download gff for
BO01434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 611..1357 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:05 Download gff for
BO01434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9766948..9767122 | 199..373 | 100 | <- | Minus |
3R | 9767177..9767358 | 17..198 | 100 | | Minus |
3R | 9766441..9766727 | 480..765 | 99 | <- | Minus |
3R | 9766788..9766893 | 374..479 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:04 Download gff for
BO01434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5592163..5592449 | 480..765 | 99 | <- | Minus |
arm_3R | 5592510..5592615 | 374..479 | 100 | <- | Minus |
arm_3R | 5592670..5592844 | 199..373 | 100 | <- | Minus |
arm_3R | 5592899..5593080 | 17..198 | 100 | | Minus |
BO01434.pep Sequence
Translation from 16 to 781
> BO01434.pep
MASRQMTNDHLRLSWHDTQMMATLSPQTVMDYFCRKSNPFYDHMCNNETV
RMQRLGPEHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYI
IGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGYTWDFS
SNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRKFPPPIPP
MLQNLQQPPPAGDDLNTARNASEMNNATGPLDIKTEGVDMKPPPEKKSKA
SFLDH
BO01434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-PE | 249 | CG9473-PE | 1..249 | 1..249 | 1325 | 100 | Plus |
MED6-PD | 249 | CG9473-PD | 1..249 | 1..249 | 1325 | 100 | Plus |
MED6-PC | 249 | CG9473-PC | 1..249 | 1..249 | 1325 | 100 | Plus |
MED6-PA | 249 | CG9473-PA | 1..249 | 1..249 | 1325 | 100 | Plus |
MED6-PB | 249 | CG9473-PB | 1..249 | 1..249 | 1325 | 100 | Plus |