Clone Sequence Records
BO01438.3prime Sequence
750 bp (749 high quality bases) assembled on 2005-11-30
> BO01438.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTTGTGCTGTGCCAGAAGCTGCATGT
CCGTCAGATACTTGATGATGTGCACCTTCGCCTCTGCCTTTTGTCGCACG
CCCAGCGTGTTGAGCATGTCCGTGACTACCATGCCGAACGACTGGTCCTC
GGCGCTGACCGCCTGCGAGACGTTGTTTTGGAAAATCTTGATGGTGTTGA
GCATGTTGTCGCTGTGCTCCTCCTCACTGCGCTCTCGCTTGAGCGGCGGC
TCGTAGAAGTATGGCTTTTGGTCCTTGCCCACGGCAGTGGCCAGCTGTGC
ATCGCTGGTGACAGTAATTTCATGCGGATGGGTCAGTGCCTGGGCCGAGG
TTGTGGCGCTGCCGTTGAAGGGCTGTGCAAATATATCCACGACGGTCTGT
TGCTGCGCCTGCTGCTGCTGCGACGGATCGGCCACCTGGTTGGCGCTTTG
ACTCCCATTGGCGCACTTGCCGAGCAGCGACTCTCGATACTGGCGGATGG
AGTCAACCAGGAATTGCATCTGCTTGAAGTAACGCCAGCGCGATTCCTGA
CATAGTTTCATCTCGCGGGCGAACTTGTCGCGCAGACTCTTCCAGCGCTT
CGTACATTTTTGTTCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGG
TCTGGGCCTTGCGCACAAAGTGCTTGTAATTGTAGTGCGACCTGTCGTAT
ATCACTGGGTTCAGCTTGACAGCCTCGATGAGATTGAGATCAAACTGCTG
BO01438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15845-PA | 762 | Adf1-RA | 28..759 | 750..19 | 3660 | 100 | Minus |
CG15845-PB | 762 | Adf1-RB | 28..759 | 750..19 | 3660 | 100 | Minus |
CG15845-PC | 789 | Adf1-RC | 55..786 | 750..19 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RE | 1668 | CG15845-RE | 226..957 | 750..19 | 3660 | 100 | Minus |
Adf1-RC | 1675 | CG15845-RC | 233..964 | 750..19 | 3660 | 100 | Minus |
Adf1-RB | 1795 | CG15845-RB | 353..1084 | 750..19 | 3660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6667072..6667374 | 321..19 | 1515 | 100 | Minus |
2R | 25286936 | 2R | 6666719..6667013 | 615..321 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 6662622..6662757 | 750..615 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:15:10 has no hits.
BO01438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:16 Download gff for
BO01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-PB | 28..762 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:10 Download gff for
BO01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15845-PC | 55..789 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:21 Download gff for
BO01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 353..1092 | 9..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:23:56 Download gff for
BO01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 353..1092 | 9..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:23:56 Download gff for
BO01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6662622..6662757 | 615..750 | 100 | -> | Minus |
2R | 6666720..6667013 | 321..614 | 100 | -> | Minus |
2R | 6667073..6667382 | 9..320 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:21 Download gff for
BO01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2550127..2550262 | 615..750 | 100 | -> | Minus |
arm_2R | 2554225..2554518 | 321..614 | 100 | -> | Minus |
arm_2R | 2554578..2554887 | 9..320 | 98 | | Minus |
BO01438.5prime Sequence
791 bp (715 high quality bases) assembled on 2005-11-30
> BO01438.5prime
GAAGTTATCAGTCGACATGGACAAGCTGGATGCCAATCTTGAGCAGCAGT
TTGATCTCAATCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGAC
AGGTCGCACTACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAA
ACAAATCGCCGAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCT
GGAAGAGTCTGCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAA
TCGCGCTGGCGTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCG
CCAGTATCGAGAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCG
CCAACCAGGTGGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACC
GTCGTGGATATATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGC
CCAGGCACTGACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGC
TGGCCACTGCCGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCG
CTCAAGCGAGAGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACAC
CATCAAGATTTTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACC
AGTCGTTCGGCATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGA
CAAAAGGCAGAGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCA
GCTTCTGGCACAGCACAACAAGTACGCAAGCTTTCTAGACC
BO01438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15845-PA | 762 | Adf1-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG15845-PB | 762 | Adf1-RB | 1..759 | 17..775 | 3795 | 100 | Plus |
CG15845-PC | 789 | Adf1-RC | 28..786 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RE | 1668 | CG15845-RE | 199..957 | 17..775 | 3795 | 100 | Plus |
Adf1-RC | 1675 | CG15845-RC | 206..964 | 17..775 | 3795 | 100 | Plus |
Adf1-RB | 1795 | CG15845-RB | 326..1084 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6667072..6667374 | 473..775 | 1515 | 100 | Plus |
2R | 25286936 | 2R | 6666719..6667013 | 179..473 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 6662595..6662757 | 17..179 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:15:17 has no hits.
BO01438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:17 Download gff for
BO01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-PB | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:11 Download gff for
BO01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15845-PC | 21..789 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:23 Download gff for
BO01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 319..1092 | 9..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:24:23 Download gff for
BO01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 319..1092 | 9..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:24:23 Download gff for
BO01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6667073..6667382 | 474..785 | 98 | | Plus |
2R | 6662588..6662757 | 9..179 | 98 | -> | Plus |
2R | 6666720..6667013 | 180..473 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:23 Download gff for
BO01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2550093..2550262 | 9..179 | 98 | -> | Plus |
arm_2R | 2554225..2554518 | 180..473 | 100 | -> | Plus |
arm_2R | 2554578..2554887 | 474..785 | 98 | | Plus |
BO01438.complete Sequence
793 bp (793 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629497
> BO01438.complete
GAAGTTATCAGTCGACATGGACAAGCTGGATGCCAATCTTGAGCAGCAGT
TTGATCTCAATCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGAC
AGGTCGCACTACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAA
ACAAATCGCCGAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCT
GGAAGAGTCTGCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAA
TCGCGCTGGCGTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCG
CCAGTATCGAGAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCG
CCAACCAGGTGGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACC
GTCGTGGATATATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGC
CCAGGCACTGACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGC
TGGCCACTGCCGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCG
CTCAAGCGAGAGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACAC
CATCAAGATTTTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACC
AGTCGTTCGGCATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGA
CAAAAGGCAGAGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCA
GCTTCTGGCACAGCACAACAAGTACGCAAGCTTTCTAGACCAT
BO01438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RE | 825 | CG15845-PE | 1..759 | 17..775 | 3795 | 100 | Plus |
Adf1-RC | 789 | CG15845-PC | 28..786 | 17..775 | 3795 | 100 | Plus |
Adf1-RB | 762 | CG15845-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RE | 1668 | CG15845-RE | 199..957 | 17..775 | 3795 | 100 | Plus |
Adf1-RC | 1675 | CG15845-RC | 206..964 | 17..775 | 3795 | 100 | Plus |
Adf1-RB | 1795 | CG15845-RB | 326..1084 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6667072..6667374 | 473..775 | 1515 | 100 | Plus |
2R | 25286936 | 2R | 6666719..6667013 | 179..473 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 6662595..6662757 | 17..179 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:59:08 has no hits.
BO01438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:21 Download gff for
BO01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 21..789 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:09 Download gff for
BO01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 200..973 | 9..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:20 Download gff for
BO01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 326..1084 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:21 Download gff for
BO01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 200..973 | 9..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:44 Download gff for
BO01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 326..1084 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:44 Download gff for
BO01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6662595..6662757 | 17..179 | 100 | -> | Plus |
2R | 6666720..6667013 | 180..473 | 100 | -> | Plus |
2R | 6667073..6667374 | 474..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:20 Download gff for
BO01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2554578..2554879 | 474..777 | 99 | | Plus |
arm_2R | 2550100..2550262 | 17..179 | 100 | -> | Plus |
arm_2R | 2554225..2554518 | 180..473 | 100 | -> | Plus |
BO01438.pep Sequence
Translation from 16 to 793
> BO01438.pep
MDKLDANLEQQFDLNLIEAVKLNPVIYDRSHYNYKHFVRKAQTWKQIAET
LGVPEQKCTKRWKSLRDKFAREMKLCQESRWRYFKQMQFLVDSIRQYRES
LLGKCANGSQSANQVADPSQQQQAQQQTVVDIFAQPFNGSATTSAQALTH
PHEITVTSDAQLATAVGKDQKPYFYEPPLKRERSEEEHSDNMLNTIKIFQ
NNVSQAVSAEDQSFGMVVTDMLNTLGVRQKAEAKVHIIKYLTDMQLLAQH
NKYASFLDH
BO01438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-PB | 253 | CG15845-PB | 1..253 | 1..253 | 1311 | 100 | Plus |
Adf1-PA | 253 | CG15845-PA | 1..253 | 1..253 | 1311 | 100 | Plus |
Adf1-PC | 262 | CG15845-PC | 10..262 | 1..253 | 1311 | 100 | Plus |
Adf1-PE | 274 | CG15845-PE | 1..253 | 1..253 | 1311 | 100 | Plus |
CG10949-PB | 459 | CG10949-PB | 131..391 | 2..236 | 170 | 25.6 | Plus |