Clone Sequence Records
BO01439.5prime Sequence
803 bp (693 high quality bases) assembled on 2005-11-30
> BO01439.5prime
GAAGTTATCAGTCGACATGACGAGCATTTGCAGCAGCAAATTCCAGCAGC
AGCATTACCAGCTGACCAACAGTAACATTTTCTTGCTGCAACATCAGCAT
CACCATCAAACGCAGCAGCACCAGTTGATTGCTCCGAAAATACCTTTGGG
TACCAGCCAACTGCAGAATATGCAGCAGAGTCAACAGTCCAATGTTGGAC
CCATGTTGTCCTCCCAGAAGAAGAAGTTCAACTACAATAACATGCCCTAT
GGCGAGCAATTGCCATCGGTAGCCAGACGAAATGCCCGTGAACGCAATCG
CGTGAAGCAGGTGAACAATGGATTCGTCAATCTCCGCCAGCATTTGCCTC
AAACTGTGGTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAGCAAGAAG
TTATCCAAGGTGGACACACTGCGAATCGCCGTTGAATATATTCGAGGACT
ACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACA
ATTCCGCCGATGAAAGTAGCAACGATGGCAGCAGCTATAACGATTACAAC
GATAGTTTGGACAGTTCGCAACAGTTCTTGACGGGAGCCACCCAGTCTGC
CCAATCCCACTCGTACCACTCCGCCTCGCCCACGCCGTCGTACTCCGGAT
CCGAGATTTCCGGAGGTGGCTATATCAAACAGGAACTACAAGAGCAGGAC
CTCAAATTCGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAGATGACGA
GGAGCTACTCGATTATATTTCATCTTGGGCAGAGCAGGCAAGCTTTCTAG
ACC
BO01439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3839-PA | 774 | l(1)sc-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)sc-RA | 1097 | CG3839-RA | 75..846 | 16..787 | 3830 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 409795..410566 | 16..787 | 3830 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:01:55 has no hits.
BO01439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:18 Download gff for
BO01439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3839-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:13 Download gff for
BO01439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3839-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:50:09 Download gff for
BO01439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 73..849 | 16..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:04 Download gff for
BO01439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 75..851 | 16..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:04 Download gff for
BO01439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 409795..410571 | 16..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:50:09 Download gff for
BO01439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 303828..304604 | 16..792 | 99 | | Plus |
BO01439.3prime Sequence
803 bp (802 high quality bases) assembled on 2005-11-30
> BO01439.3prime
ATGGTCTAGAAAGCTTGCCTGCTCTTGCCAAGATGAAATATAATCGAGTA
GCTCCTCGTCATCTGGCTGCTCGTCACTGAAGCTATCAAAGGAGTCGAAT
TTGAGGTCCTGCTCTTGTAGTTCCTGTTTGATATAGCCACCTCCGGAAAT
CTCGGATCCGGAGTACGACGGCGTGGGCGAGGCGGAGTGGTACGAGTGGG
ATTGGGCAGACTGGGTGGCTCCCGTCAAGAACTGTTGCGAACTGTCCAAA
CTATCGTTGTAATCGTTATAGCTGCTGCCATCGTTGCTACTTTCATCGGC
GGAATTGTAGATGTGACGAGTTGATGAAGCAGTGCCATCATCAAGCATGT
CCTGTAGTCCTCGAATATATTCAACGGCGATTCGCAGTGTGTCCACCTTG
GATAACTTCTTGCTGCTACCACGTCCTCCATTGGACAGCGAGTTTACCAC
AGTTTGAGGCAAATGCTGGCGGAGATTGACGAATCCATTGTTCACCTGCT
TCACGCGATTGCGTTCACGGGCATTTCGTCTGGCTACCGATGGCAATTGC
TCGCCATAGGGCATGTTATTGTAGTTGAACTTCTTCTTCTGGGAGGACAA
CATGGGTCCAACATTGGACTGTTGACTCTGCTGCATATTCTGCAGTTGGC
TGGTACCCAAAGGTATTTTCGGAGCAATCAACTGGTGCTGCTGCGTTTGA
TGGTGATGCTGATGTTGCAGCAAGAAAATGTTACTGTTGGTCAGCTGGTA
ATGCTGCTGCTGGAATTTGCTGCTGCAAATGCTCGTCATGTCGACTGATA
ACT
BO01439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3839-PA | 774 | l(1)sc-RA | 1..771 | 789..19 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)sc-RA | 1097 | CG3839-RA | 75..846 | 790..19 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 409795..410566 | 790..19 | 3860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:50:35 has no hits.
BO01439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:18 Download gff for
BO01439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3839-PA | 1..774 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:12 Download gff for
BO01439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3839-PA | 1..774 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:43 Download gff for
BO01439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 73..849 | 14..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:17:12 Download gff for
BO01439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 75..851 | 14..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:17:12 Download gff for
BO01439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 409795..410571 | 14..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:43 Download gff for
BO01439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 303828..304604 | 14..790 | 99 | | Minus |
BO01439.complete Sequence
805 bp (805 high quality bases) assembled on 2006-04-03
GenBank Submission: FJ629498
> BO01439.complete
GAAGTTATCAGTCGACATGACGAGCATTTGCAGCAGCAAATTCCAGCAGC
AGCATTACCAGCTGACCAACAGTAACATTTTCTTGCTGCAACATCAGCAT
CACCATCAAACGCAGCAGCACCAGTTGATTGCTCCGAAAATACCTTTGGG
TACCAGCCAACTGCAGAATATGCAGCAGAGTCAACAGTCCAATGTTGGAC
CCATGTTGTCCTCCCAGAAGAAGAAGTTCAACTACAATAACATGCCCTAT
GGCGAGCAATTGCCATCGGTAGCCAGACGAAATGCCCGTGAACGCAATCG
CGTGAAGCAGGTGAACAATGGATTCGTCAATCTCCGCCAGCATTTGCCTC
AAACTGTGGTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAGCAAGAAG
TTATCCAAGGTGGACACACTGCGAATCGCCGTTGAATATATTCGAGGACT
ACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACA
ATTCCGCCGATGAAAGTAGCAACGATGGCAGCAGCTATAACGATTACAAC
GATAGTTTGGACAGTTCGCAACAGTTCTTGACGGGAGCCACCCAGTCTGC
CCAATCCCACTCGTACCACTCCGCCTCGCCCACGCCGTCGTACTCCGGAT
CCGAGATTTCCGGAGGTGGCTATATCAAACAGGAACTACAAGAGCAGGAC
CTCAAATTCGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAGATGACGA
GGAGCTACTCGATTATATTTCATCTTGGCAAGAGCAGGCAAGCTTTCTAG
ACCAT
BO01439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)sc-RA | 774 | CG3839-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)sc-RA | 1097 | CG3839-RA | 75..846 | 16..787 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 409795..410566 | 16..787 | 3860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:51:20 has no hits.
BO01439.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:04 Download gff for
BO01439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:32 Download gff for
BO01439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 73..849 | 16..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:11 Download gff for
BO01439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 74..844 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:04 Download gff for
BO01439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 73..849 | 16..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:33 Download gff for
BO01439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)sc-RA | 76..846 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:33 Download gff for
BO01439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 409796..410566 | 17..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:11 Download gff for
BO01439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 303829..304599 | 17..789 | 99 | | Plus |
BO01439.pep Sequence
Translation from 16 to 805
> BO01439.pep
MTSICSSKFQQQHYQLTNSNIFLLQHQHHHQTQQHQLIAPKIPLGTSQLQ
NMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVN
NGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLD
DGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSY
HSASPTPSYSGSEISGGGYIKQELQEQDLKFDSFDSFSDEQPDDEELLDY
ISSWQEQASFLDH
BO01439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)sc-PA | 257 | CG3839-PA | 1..257 | 1..257 | 1334 | 100 | Plus |
sc-PA | 345 | CG3827-PA | 92..345 | 77..257 | 309 | 38.2 | Plus |
ac-PA | 201 | CG3796-PA | 24..199 | 83..256 | 291 | 41.7 | Plus |
ase-PA | 486 | CG3258-PA | 96..247 | 25..167 | 222 | 40.1 | Plus |