Clone BO01439 Report

Search the DGRC for BO01439

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:14
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)sc-RA
Protein status:BO01439.pep: validated full length
Sequenced Size:805

Clone Sequence Records

BO01439.5prime Sequence

803 bp (693 high quality bases) assembled on 2005-11-30

> BO01439.5prime
GAAGTTATCAGTCGACATGACGAGCATTTGCAGCAGCAAATTCCAGCAGC
AGCATTACCAGCTGACCAACAGTAACATTTTCTTGCTGCAACATCAGCAT
CACCATCAAACGCAGCAGCACCAGTTGATTGCTCCGAAAATACCTTTGGG
TACCAGCCAACTGCAGAATATGCAGCAGAGTCAACAGTCCAATGTTGGAC
CCATGTTGTCCTCCCAGAAGAAGAAGTTCAACTACAATAACATGCCCTAT
GGCGAGCAATTGCCATCGGTAGCCAGACGAAATGCCCGTGAACGCAATCG
CGTGAAGCAGGTGAACAATGGATTCGTCAATCTCCGCCAGCATTTGCCTC
AAACTGTGGTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAGCAAGAAG
TTATCCAAGGTGGACACACTGCGAATCGCCGTTGAATATATTCGAGGACT
ACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACA
ATTCCGCCGATGAAAGTAGCAACGATGGCAGCAGCTATAACGATTACAAC
GATAGTTTGGACAGTTCGCAACAGTTCTTGACGGGAGCCACCCAGTCTGC
CCAATCCCACTCGTACCACTCCGCCTCGCCCACGCCGTCGTACTCCGGAT
CCGAGATTTCCGGAGGTGGCTATATCAAACAGGAACTACAAGAGCAGGAC
CTCAAATTCGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAGATGACGA
GGAGCTACTCGATTATATTTCATCTTGGGCAGAGCAGGCAAGCTTTCTAG
ACC

BO01439.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3839-PA 774 l(1)sc-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)sc-RA 1097 CG3839-RA 75..846 16..787 3830 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 409795..410566 16..787 3830 99.7 Plus
Blast to na_te.dros performed on 2015-02-13 06:01:55 has no hits.

BO01439.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:18 Download gff for BO01439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3839-PA 1..774 17..790 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:13 Download gff for BO01439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3839-PA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:50:09 Download gff for BO01439.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 73..849 16..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:04 Download gff for BO01439.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 75..851 16..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:04 Download gff for BO01439.5prime
Subject Subject Range Query Range Percent Splice Strand
X 409795..410571 16..792 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:50:09 Download gff for BO01439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 303828..304604 16..792 99   Plus

BO01439.3prime Sequence

803 bp (802 high quality bases) assembled on 2005-11-30

> BO01439.3prime
ATGGTCTAGAAAGCTTGCCTGCTCTTGCCAAGATGAAATATAATCGAGTA
GCTCCTCGTCATCTGGCTGCTCGTCACTGAAGCTATCAAAGGAGTCGAAT
TTGAGGTCCTGCTCTTGTAGTTCCTGTTTGATATAGCCACCTCCGGAAAT
CTCGGATCCGGAGTACGACGGCGTGGGCGAGGCGGAGTGGTACGAGTGGG
ATTGGGCAGACTGGGTGGCTCCCGTCAAGAACTGTTGCGAACTGTCCAAA
CTATCGTTGTAATCGTTATAGCTGCTGCCATCGTTGCTACTTTCATCGGC
GGAATTGTAGATGTGACGAGTTGATGAAGCAGTGCCATCATCAAGCATGT
CCTGTAGTCCTCGAATATATTCAACGGCGATTCGCAGTGTGTCCACCTTG
GATAACTTCTTGCTGCTACCACGTCCTCCATTGGACAGCGAGTTTACCAC
AGTTTGAGGCAAATGCTGGCGGAGATTGACGAATCCATTGTTCACCTGCT
TCACGCGATTGCGTTCACGGGCATTTCGTCTGGCTACCGATGGCAATTGC
TCGCCATAGGGCATGTTATTGTAGTTGAACTTCTTCTTCTGGGAGGACAA
CATGGGTCCAACATTGGACTGTTGACTCTGCTGCATATTCTGCAGTTGGC
TGGTACCCAAAGGTATTTTCGGAGCAATCAACTGGTGCTGCTGCGTTTGA
TGGTGATGCTGATGTTGCAGCAAGAAAATGTTACTGTTGGTCAGCTGGTA
ATGCTGCTGCTGGAATTTGCTGCTGCAAATGCTCGTCATGTCGACTGATA
ACT

BO01439.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3839-PA 774 l(1)sc-RA 1..771 789..19 3855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)sc-RA 1097 CG3839-RA 75..846 790..19 3860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 409795..410566 790..19 3860 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:50:35 has no hits.

BO01439.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:18 Download gff for BO01439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3839-PA 1..774 16..789 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:12 Download gff for BO01439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3839-PA 1..774 16..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:43 Download gff for BO01439.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 73..849 14..790 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:17:12 Download gff for BO01439.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 75..851 14..790 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:17:12 Download gff for BO01439.3prime
Subject Subject Range Query Range Percent Splice Strand
X 409795..410571 14..790 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:43 Download gff for BO01439.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 303828..304604 14..790 99   Minus

BO01439.complete Sequence

805 bp (805 high quality bases) assembled on 2006-04-03

GenBank Submission: FJ629498

> BO01439.complete
GAAGTTATCAGTCGACATGACGAGCATTTGCAGCAGCAAATTCCAGCAGC
AGCATTACCAGCTGACCAACAGTAACATTTTCTTGCTGCAACATCAGCAT
CACCATCAAACGCAGCAGCACCAGTTGATTGCTCCGAAAATACCTTTGGG
TACCAGCCAACTGCAGAATATGCAGCAGAGTCAACAGTCCAATGTTGGAC
CCATGTTGTCCTCCCAGAAGAAGAAGTTCAACTACAATAACATGCCCTAT
GGCGAGCAATTGCCATCGGTAGCCAGACGAAATGCCCGTGAACGCAATCG
CGTGAAGCAGGTGAACAATGGATTCGTCAATCTCCGCCAGCATTTGCCTC
AAACTGTGGTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAGCAAGAAG
TTATCCAAGGTGGACACACTGCGAATCGCCGTTGAATATATTCGAGGACT
ACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACA
ATTCCGCCGATGAAAGTAGCAACGATGGCAGCAGCTATAACGATTACAAC
GATAGTTTGGACAGTTCGCAACAGTTCTTGACGGGAGCCACCCAGTCTGC
CCAATCCCACTCGTACCACTCCGCCTCGCCCACGCCGTCGTACTCCGGAT
CCGAGATTTCCGGAGGTGGCTATATCAAACAGGAACTACAAGAGCAGGAC
CTCAAATTCGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAGATGACGA
GGAGCTACTCGATTATATTTCATCTTGGCAAGAGCAGGCAAGCTTTCTAG
ACCAT

BO01439.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)sc-RA 774 CG3839-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)sc-RA 1097 CG3839-RA 75..846 16..787 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 409795..410566 16..787 3860 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:51:20 has no hits.

BO01439.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:04 Download gff for BO01439.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:32 Download gff for BO01439.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 73..849 16..792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:11 Download gff for BO01439.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 74..844 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:04 Download gff for BO01439.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 73..849 16..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:33 Download gff for BO01439.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)sc-RA 76..846 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:33 Download gff for BO01439.complete
Subject Subject Range Query Range Percent Splice Strand
X 409796..410566 17..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:11 Download gff for BO01439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 303829..304599 17..789 99   Plus

BO01439.pep Sequence

Translation from 16 to 805

> BO01439.pep
MTSICSSKFQQQHYQLTNSNIFLLQHQHHHQTQQHQLIAPKIPLGTSQLQ
NMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVN
NGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLD
DGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSY
HSASPTPSYSGSEISGGGYIKQELQEQDLKFDSFDSFSDEQPDDEELLDY
ISSWQEQASFLDH

BO01439.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)sc-PA 257 CG3839-PA 1..257 1..257 1334 100 Plus
sc-PA 345 CG3827-PA 92..345 77..257 309 38.2 Plus
ac-PA 201 CG3796-PA 24..199 83..256 291 41.7 Plus
ase-PA 486 CG3258-PA 96..247 25..167 222 40.1 Plus