Clone Sequence Records
BO01444.3prime Sequence
806 bp (805 high quality bases) assembled on 2005-11-30
> BO01444.3prime
ATGGTCTAGAAAGCTTGCCTTGTCGTGCCGCAACTTAGCGCCCAGAGACG
CGAAAGCCTCGTGGCAGATGGTGCACTGGAACCTGCGGTTAATTAAATGA
ACCTGGGTGCGATGCTGCTTGAGAAGCGCCTTCTTGTTAAAAGTCTGTGG
GCACTCAGGGCAGGGGAAGAACTGGTTCATATCCCGCCGGTTCTGGTGCC
CATTTAAATGCTCGGTGTACAGGAACGCATCGTGGAACAGGGTTCCACAC
TCGTCGCAGATAAAGAAGTTACTGCGCCTCTTGGCGGCCCGCTCCATTTC
CTGCTCCTGTAGATCCTCCTGCTGCGCCGCTTCTGCTGCCGCCTCTGCTG
CCGCTATCACAGCGGCAGAGGGGTCGTCATCCAGCTCGATTTCCTCTAGG
TCTTGGTGTTCCTCTTTCGTGCCTTGATAACAAACGTACTGGTCGTCATC
GTAGTGCGTCTCCAATTGATCCGCATCGATCAGTTGCTCGTCCAGCGGCT
CGGAACTAAGCTCAACGTGAACAGTGCTTTGATCACTGGTCTTCTTTATG
ATATCCAGCAGGTACTTTTGCGAGAAGATGCACCGCTCGCGGAACTTGGT
GGCCAGGTCCAGCTCGGAGAAGCAGCGCTCGCAAACAATCTCCGGCAGCC
CCTGGTTTCTTGTCAGCTCCACTCCCGTGATTAGCTTCAGTTGACCCAAA
TATTTTCCCCGCATGTGAATGAATATGTTGCGATCTCGCTGGTGGCCCAT
AATTTTGTTGGCGCAAATACGGCAAACGTCGGCGAGGTTCATGTCGACTG
ATAACT
BO01444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14667-PA | 777 | CG14667-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
CG14667-PB | 1014 | CG14667-RB | 1..773 | 792..20 | 3865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14667-RB | 1260 | CG14667-RB | 70..842 | 792..20 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5375276..5375925 | 668..19 | 3250 | 100 | Minus |
3R | 32079331 | 3R | 5375091..5375216 | 792..667 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:34:57 has no hits.
BO01444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:25 Download gff for
BO01444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:24 Download gff for
BO01444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:58 Download gff for
BO01444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RA | 22..799 | 14..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:10 Download gff for
BO01444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RB | 70..845 | 17..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:10 Download gff for
BO01444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5375091..5375216 | 667..792 | 100 | -> | Minus |
3R | 5375278..5375929 | 14..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:58 Download gff for
BO01444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1200813..1200938 | 667..792 | 100 | -> | Minus |
arm_3R | 1201000..1201651 | 14..666 | 99 | | Minus |
BO01444.5prime Sequence
806 bp (784 high quality bases) assembled on 2005-11-30
> BO01444.5prime
GAAGTTATCAGTCGACATGAACCTCGCCGACGTTTGCCGTATTTGCGCCA
ACAAAATTATGGGCCACCAGCGAGATCGCAACATATTCATTCACATGCGG
GGAAAATATTTGGGTCAACTGAAGCTAATCACGGGAGTGGAGCTGACAAG
AAACCAGGGGCTGCCGGAGATTGTTTGCGAGCGCTGCTTCTCCGAGCTGG
ACCTGGCCACCAAGTTCCGCGAGCGGTGCATCTTCTCGCAAAAGTACCTG
CTGGATATCATAAAGAAGACCAGTGATCAAAGCACTGTTCACGTTGAGCT
TAGTTCCGAGCCGCTGGACGAGCAACTGATCGATGCGGATCAATTGGAGA
CGCACTACGATGACGACCAGTACGTTTGTTATCAAGGCACGAAAGAGGAA
CACCAAGACCTAGAGGAAATCGAGCTGGATGACGACCCCTCTGCCGCTGT
GATAGCGGCAGCAGAGGCGGCAGCAGAAGCGGCGCAGCAGGAGGATCTAC
AGGAGCAGGAAATGGAGCGGGCCGCCAAGAGGCGCAGTAACTTCTTTATC
TGCGACGAGTGTGGAACCCTGTTCCACGATGCGTTCCTGTACACCGAGCA
TTTAAATGGGCACCAGAACCGGCGGGATATGAACCAGTTCTTCCCCTGCC
CTGAGTGCCCACAGACTTTTAACAAGAAGGCGCTTCTCAAGCAGCATCGC
ACCCAGGTTCATTTAATTAACCGCAGGTTCCAGTGCACCATCTGCCACGA
GGCTTTCGCGTCTCTGGGCGCTAAGTTGCGGCACGACAAGGCAAGCTTTC
TAGACC
BO01444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14667-PA | 777 | CG14667-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG14667-PB | 1014 | CG14667-RB | 1..773 | 17..789 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14667-RB | 1260 | CG14667-RB | 70..842 | 17..789 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5375276..5375925 | 141..790 | 3250 | 100 | Plus |
3R | 32079331 | 3R | 5375091..5375216 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:50:04 has no hits.
BO01444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:26 Download gff for
BO01444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-PA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:25 Download gff for
BO01444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-PA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:15 Download gff for
BO01444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RA | 22..799 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:24 Download gff for
BO01444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RB | 70..845 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:24 Download gff for
BO01444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5375091..5375216 | 17..142 | 100 | -> | Plus |
3R | 5375278..5375929 | 143..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:15 Download gff for
BO01444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1200813..1200938 | 17..142 | 100 | -> | Plus |
arm_3R | 1201000..1201651 | 143..795 | 99 | | Plus |
BO01444.complete Sequence
808 bp (808 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629500
> BO01444.complete
GAAGTTATCAGTCGACATGAACCTCGCCGACGTTTGCCGTATTTGCGCCA
ACAAAATTATGGGCCACCAGCGAGATCGCAACATATTCATTCACATGCGG
GGAAAATATTTGGGTCAACTGAAGCTAATCACGGGAGTGGAGCTGACAAG
AAACCAGGGGCTGCCGGAGATTGTTTGCGAGCGCTGCTTCTCCGAGCTGG
ACCTGGCCACCAAGTTCCGCGAGCGGTGCATCTTCTCGCAAAAGTACCTG
CTGGATATCATAAAGAAGACCAGTGATCAAAGCACTGTTCACGTTGAGCT
TAGTTCCGAGCCGCTGGACGAGCAACTGATCGATGCGGATCAATTGGAGA
CGCACTACGATGACGACCAGTACGTTTGTTATCAAGGCACGAAAGAGGAA
CACCAAGACCTAGAGGAAATCGAGCTGGATGACGACCCCTCTGCCGCTGT
GATAGCGGCAGCAGAGGCGGCAGCAGAAGCGGCGCAGCAGGAGGATCTAC
AGGAGCAGGAAATGGAGCGGGCCGCCAAGAGGCGCAGTAACTTCTTTATC
TGCGACGAGTGTGGAACCCTGTTCCACGATGCGTTCCTGTACACCGAGCA
TTTAAATGGGCACCAGAACCGGCGGGATATGAACCAGTTCTTCCCCTGCC
CTGAGTGCCCACAGACTTTTAACAAGAAGGCGCTTCTCAAGCAGCATCGC
ACCCAGGTTCATTTAATTAACCGCAGGTTCCAGTGCACCATCTGCCACGA
GGCTTTCGCGTCTCTGGGCGCTAAGTTGCGGCACGACAAGGCAAGCTTTC
TAGACCAT
BO01444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14667-RB | 1014 | CG14667-PB | 1..773 | 17..789 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14667-RB | 1260 | CG14667-RB | 70..842 | 17..789 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5375276..5375925 | 141..790 | 3250 | 100 | Plus |
3R | 32079331 | 3R | 5375091..5375216 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:13:33 has no hits.
BO01444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:51 Download gff for
BO01444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:24 Download gff for
BO01444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RA | 22..799 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:57 Download gff for
BO01444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RA | 22..795 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:44:51 Download gff for
BO01444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RA | 22..799 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:04 Download gff for
BO01444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14667-RB | 70..845 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:04 Download gff for
BO01444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5375091..5375216 | 17..142 | 100 | -> | Plus |
3R | 5375278..5375925 | 143..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:57 Download gff for
BO01444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1200813..1200938 | 17..142 | 100 | -> | Plus |
arm_3R | 1201000..1201647 | 143..792 | 99 | | Plus |
BO01444.pep Sequence
Translation from 16 to 808
> BO01444.pep
MNLADVCRICANKIMGHQRDRNIFIHMRGKYLGQLKLITGVELTRNQGLP
EIVCERCFSELDLATKFRERCIFSQKYLLDIIKKTSDQSTVHVELSSEPL
DEQLIDADQLETHYDDDQYVCYQGTKEEHQDLEEIELDDDPSAAVIAAAE
AAAEAAQQEDLQEQEMERAAKRRSNFFICDECGTLFHDAFLYTEHLNGHQ
NRRDMNQFFPCPECPQTFNKKALLKQHRTQVHLINRRFQCTICHEAFASL
GAKLRHDKASFLDH
BO01444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14667-PB | 337 | CG14667-PB | 1..259 | 1..259 | 1376 | 100 | Plus |
CG8159-PB | 399 | CG8159-PB | 2..268 | 3..258 | 224 | 24.9 | Plus |
M1BP-PA | 418 | CG9797-PA | 8..327 | 2..258 | 210 | 23.3 | Plus |
ranshi-PA | 346 | CG9793-PA | 5..272 | 6..258 | 198 | 23.7 | Plus |
CG11762-PA | 312 | CG11762-PA | 5..243 | 6..258 | 187 | 25.1 | Plus |