Clone Sequence Records
BO01446.3prime Sequence
842 bp (796 high quality bases) assembled on 2005-11-30
> BO01446.3prime
ATGGTCTAGAAAGCTTGCCACATCTTGGAATTTCGATAGACGTGCACGCA
AGTCCATGTTCTCCTGTTTCAACTGCTCCACCTCCTGATGTAATGTTGCA
TTTTCCTTCTCCAAGTAGCGTGCCCGCATCGCAATCTGGTTCTCCTTCTG
GCGCCGGGCATCGCGGGATCGCTTGGCGGCAATGTTGTTCTTCCGGCGAC
GTGCCCAGTACTTGTCGTCCTTGAGCTCATCTGGAACGAATTGCTTGCGT
GACTTTTTGATCATCGGCTGCGGCTTGAGCTCCTCGTCGGAGAAGGCTCT
GGTTCGCGGATCAAAGTCACGGCCCGAGGAGGCGAACGAAAATGTTGACT
CGGCCGGCGATGGCGGATTTAGCGTGTCCGGACTGATGCAGTCGGATGGC
GAGGGCGACCGCTCTCGCTTTGTGGTTATGTGGCCAAGACCAAGAGACAG
ACCCGCTGCGTGACCCAGGGAATCGGACCGGTGGCCCAGGCCACTGGAGT
GGCCCAGATGCGTGCCGGGCAGGCCATCAGGTATGTTGTTCTCCGACAGG
AATTCGTCTAGGTCGGCATATTGTGTTACCTTGAGGTCGGCATCATAGGG
CAGGGTCTTGTCCCACAGATTTGGGCCGAGAAACGCTGTTTGCGCCTCAA
CATTCCAGATGTCGCCCTCCTCCTTGTATTTGTCATCTGGGCAGATGATC
TCTTTGCTATTCGATGTGGATTTGCCATTAATGCCGCTGATCAGTGGGTA
ATTACCATCACGGCCGCCAATTAAGTTTTTTTAACCAGTTTCGATCAGTG
TTGGGGACGATCGCTCCCTGTCGCTCATGTCGACTGATAACT
BO01446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17888-PB | 813 | Pdp1-RB | 1..810 | 828..19 | 4025 | 99.8 | Minus |
CG17888-PA | 813 | Pdp1-RA | 1..810 | 828..19 | 4025 | 99.8 | Minus |
CG17888-PG | 855 | Pdp1-RG | 145..852 | 726..19 | 3540 | 100 | Minus |
CG17888-PE | 855 | Pdp1-RE | 145..852 | 726..19 | 3540 | 100 | Minus |
CG17888-PF | 753 | Pdp1-RF | 43..750 | 726..19 | 3540 | 100 | Minus |
CG17888-PD | 1944 | Pdp1-RD | 1234..1941 | 726..19 | 3540 | 100 | Minus |
CG17888-PH | 1062 | Pdp1-RH | 352..1059 | 726..19 | 3540 | 100 | Minus |
CG17888-PC | 1713 | Pdp1-RC | 1003..1710 | 726..19 | 3540 | 100 | Minus |
CG17888-PG | 855 | Pdp1-RG | 1..106 | 828..723 | 505 | 99 | Minus |
CG17888-PE | 855 | Pdp1-RE | 1..106 | 828..723 | 505 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 6855 | CG17888-RK | 1175..1984 | 828..19 | 4035 | 99.9 | Minus |
Pdp1-RP | 6398 | CG17888-RP | 1175..1984 | 828..19 | 4035 | 99.9 | Minus |
Pdp1-RB | 5065 | CG17888-RB | 2264..3073 | 828..19 | 4035 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7816484..7816725 | 103..344 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 7817437..7817662 | 345..570 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 7818069..7818224 | 571..726 | 780 | 100 | Plus |
3L | 28110227 | 3L | 7853182..7853285 | 725..828 | 505 | 99 | Plus |
3L | 28110227 | 3L | 7816329..7816412 | 19..102 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 18:53:44 has no hits.
BO01446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:30 Download gff for
BO01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-PB | 1..813 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:29 Download gff for
BO01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17888-PA | 1..813 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:12:08 Download gff for
BO01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3076 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:27:18 Download gff for
BO01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3076 | 15..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:27:18 Download gff for
BO01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7816326..7816412 | 15..102 | 97 | <- | Plus |
3L | 7816484..7816725 | 103..344 | 100 | <- | Plus |
3L | 7817437..7817662 | 345..570 | 100 | <- | Plus |
3L | 7818069..7818223 | 571..725 | 100 | <- | Plus |
3L | 7853183..7853285 | 726..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:12:08 Download gff for
BO01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7846283..7846385 | 726..828 | 99 | | Plus |
arm_3L | 7810537..7810762 | 345..570 | 100 | <- | Plus |
arm_3L | 7809426..7809512 | 15..102 | 97 | <- | Plus |
arm_3L | 7809584..7809825 | 103..344 | 100 | <- | Plus |
arm_3L | 7811169..7811323 | 571..725 | 100 | <- | Plus |
BO01446.5prime Sequence
823 bp (743 high quality bases) assembled on 2005-11-30
> BO01446.5prime
GAAGTTATCAGTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGA
TCGAAACTGGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCA
CTGATCAGCGGCATTAATGGCAAATCCACATCGAATAGCAAAGAGATCAT
CTGCCCAGATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGG
CGCAAACAGCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTAT
GATGCCGACCTCAAGGTAACACAATATGCCGACCTAGACGAATTCCTGTC
GGAGAACAACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCA
GTGGCCTGGGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCT
CTTGGTCTTGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCGCCATC
CGACTGCATCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAA
CATTTTCGTTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCC
TTCTCCGACGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAA
GCAATTCGTTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCC
GGAAGAACAACATTGCCGCCAAGCGATCCCGCGATGCCCGGCGCCAGAAG
GAGAACCAGATTGCGATGCGGGCACGCTACTTGGAGAAGGAAAATGNCAC
ATTACATCANGAGGTGGAGCAGTTGAAACAGGAGAACATGGACTTGCGTG
CACGTCTATCGAAATTCCAAGAT
BO01446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17888-PB | 813 | Pdp1-RB | 1..807 | 17..823 | 3972 | 99.6 | Plus |
CG17888-PA | 813 | Pdp1-RA | 1..807 | 17..823 | 3972 | 99.6 | Plus |
CG17888-PG | 855 | Pdp1-RG | 145..849 | 119..823 | 3462 | 99.5 | Plus |
CG17888-PE | 855 | Pdp1-RE | 145..849 | 119..823 | 3462 | 99.5 | Plus |
CG17888-PF | 753 | Pdp1-RF | 43..747 | 119..823 | 3462 | 99.5 | Plus |
CG17888-PD | 1944 | Pdp1-RD | 1234..1938 | 119..823 | 3462 | 99.5 | Plus |
CG17888-PH | 1062 | Pdp1-RH | 352..1056 | 119..823 | 3462 | 99.5 | Plus |
CG17888-PC | 1713 | Pdp1-RC | 1003..1707 | 119..823 | 3462 | 99.5 | Plus |
CG17888-PG | 855 | Pdp1-RG | 1..106 | 17..122 | 530 | 100 | Plus |
CG17888-PE | 855 | Pdp1-RE | 1..106 | 17..122 | 530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 6855 | CG17888-RK | 1175..1981 | 17..823 | 3998 | 99.6 | Plus |
Pdp1-RP | 6398 | CG17888-RP | 1175..1981 | 17..823 | 3998 | 99.6 | Plus |
Pdp1-RB | 5065 | CG17888-RB | 2264..3070 | 17..823 | 3998 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7816484..7816725 | 742..501 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 7817437..7817662 | 500..275 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 7818069..7818224 | 274..119 | 780 | 100 | Minus |
3L | 28110227 | 3L | 7853182..7853285 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 7816332..7816406 | 823..749 | 364 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:15:33 has no hits.
BO01446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:31 Download gff for
BO01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:31 Download gff for
BO01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17888-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:27 Download gff for
BO01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3070 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:18 Download gff for
BO01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3070 | 17..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:18 Download gff for
BO01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7816332..7816412 | 743..823 | 96 | <- | Minus |
3L | 7816484..7816725 | 501..742 | 100 | <- | Minus |
3L | 7817437..7817662 | 275..500 | 100 | <- | Minus |
3L | 7818069..7818223 | 120..274 | 100 | <- | Minus |
3L | 7853183..7853285 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:27 Download gff for
BO01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7809432..7809512 | 743..823 | 96 | <- | Minus |
arm_3L | 7809584..7809825 | 501..742 | 100 | <- | Minus |
arm_3L | 7810537..7810762 | 275..500 | 100 | <- | Minus |
arm_3L | 7811169..7811323 | 120..274 | 100 | <- | Minus |
arm_3L | 7846283..7846385 | 17..119 | 100 | | Minus |
BO01446.complete Sequence
844 bp (844 high quality bases) assembled on 2005-06-23
GenBank Submission: KX796304
> BO01446.complete
GAAGTTATCAGTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGA
TCGAAACTGGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCA
CTGATCAGCGGCATTAATGGCAAATCCACATCGAATAGCAAAGAGATCAT
CTGCCCAGATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGG
CGCAAACAGCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTAT
GATGCCGACCTCAAGGTAACACAATATGCCGACCTAGACGAATTCCTGTC
GGAGAACAACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCA
GTGGCCTGGGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCT
CTTGGTCTTGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCGCCATC
CGACTGCATCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAA
CATTTTCGTTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCC
TTCTCCGACGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAA
GCAATTCGTTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCC
GGAAGAACAACATTGCCGCCAAGCGATCCCGCGATGCCCGGCGCCAGAAG
GAGAACCAGATTGCGATGCGGGCACGCTACTTGGAGAAGGAAAATGCAAC
ATTACATCAGGAGGTGGAGCAGTTGAAACAGGAGAACATGGACTTGCGTG
CACGTCTATCGAAATTCCAAGATGTGGCAAGCTTTCTAGACCAT
BO01446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 813 | CG17888-PK | 1..810 | 17..826 | 4050 | 100 | Plus |
Pdp1-RP | 813 | CG17888-PP | 1..810 | 17..826 | 4050 | 100 | Plus |
Pdp1-RB | 813 | CG17888-PB | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 6855 | CG17888-RK | 1175..1984 | 17..826 | 4050 | 100 | Plus |
Pdp1-RP | 6398 | CG17888-RP | 1175..1984 | 17..826 | 4050 | 100 | Plus |
Pdp1-RB | 5065 | CG17888-RB | 2264..3073 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7816484..7816725 | 742..501 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 7817437..7817662 | 500..275 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 7818069..7818224 | 274..119 | 780 | 100 | Minus |
3L | 28110227 | 3L | 7853182..7853285 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 7816329..7816412 | 826..743 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:37:26 has no hits.
BO01446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:10 Download gff for
BO01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:44 Download gff for
BO01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 1173..1982 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:18 Download gff for
BO01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3073 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:10 Download gff for
BO01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 1173..1985 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:45 Download gff for
BO01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3073 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:45 Download gff for
BO01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7818069..7818223 | 120..274 | 100 | <- | Minus |
3L | 7853183..7853285 | 17..119 | 100 | | Minus |
3L | 7816327..7816412 | 743..828 | 97 | <- | Minus |
3L | 7816484..7816725 | 501..742 | 100 | <- | Minus |
3L | 7817437..7817662 | 275..500 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:18 Download gff for
BO01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7809427..7809512 | 743..828 | 97 | <- | Minus |
arm_3L | 7809584..7809825 | 501..742 | 100 | <- | Minus |
arm_3L | 7810537..7810762 | 275..500 | 100 | <- | Minus |
arm_3L | 7811169..7811323 | 120..274 | 100 | <- | Minus |
arm_3L | 7846283..7846385 | 17..119 | 100 | | Minus |
BO01446.pep Sequence
Translation from 16 to 844
> BO01446.pep
MSDRERSSPTLIETGLKNLIGGRDGNYPLISGINGKSTSNSKEIICPDDK
YKEEGDIWNVEAQTAFLGPNLWDKTLPYDADLKVTQYADLDEFLSENNIP
DGLPGTHLGHSSGLGHRSDSLGHAAGLSLGLGHITTKRERSPSPSDCISP
DTLNPPSPAESTFSFASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPD
ELKDDKYWARRRKNNIAAKRSRDARRQKENQIAMRARYLEKENATLHQEV
EQLKQENMDLRARLSKFQDVASFLDH
BO01446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-PK | 270 | CG17888-PK | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PP | 270 | CG17888-PP | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PB | 270 | CG17888-PB | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PM | 275 | CG17888-PM | 1..275 | 1..270 | 1396 | 97.8 | Plus |
Pdp1-PG | 284 | CG17888-PG | 1..284 | 1..270 | 1392 | 95.1 | Plus |