Clone Sequence Records
BO01450.3prime Sequence
862 bp (768 high quality bases) assembled on 2005-11-30
> BO01450.3prime
ATGGTCTAGAAAGCTTGCCTCCGAGTCGCTGCTGCCTGACTTGTGCTCCT
CCTCTTTCTTCTCTTCAGTCTTGTAGTGGCGATATTCTTTCTTGAGCTCC
CACATGTTCTTGTGCGGGTTCTTCATATTGTAATCGCAGACATCCTTGAG
AATCTCCTTCAGGTAGCTAATCGGCTGGTTGGTGATCTTGACCAGATCCT
TGATGTTATAGTATTGATGCTTCTCGAATGCGTGGAAGAGCATATCCATC
ACGGCATTCTTGTCGTCGCGCGCCTTCTTGCCCTCGGCCTTCTTTCGCTC
CCGATATTCAATGTTGTGTGCGTGGTCTTTTACAGGCTTAAAGTTCTGCA
CGATTTTGTCGATAGGCTGCACACGTCGCTGTGGTTCCGATGCCTTGCGT
ATGGACTCCAGCTTTAGTTTCATGTAGCAGTTGTCGGCGATGGGTCGGCA
CTCTAGCTTTTGCACAATCCTGCCCTCCATATACAACTTTTCGTTATCCG
GCTGTGCCGCCGAGGTAGTCGAGTTCTCCTTGCCATCGGACGGTGCCATG
TGCGAGAATACGCCGAGCGTCTGCTTGGTGACCTGCGACACGTCCAGGAT
GTGCTCGGTGGGTATTTTCTCCTCGGGATCTAGAGCCAAAACGGCGGGCG
TGAGGGAAAGCGAGACCTGGGCCTTTTGGCCAGGTGTCTTGTTTATCCGG
AGCTTGCCCACGTCCATGTTCGTCGGCGCCTTCTCCCATTTCTGGGCAAT
GTACTTGGGCACCTTCACCAGCCATACGCCTCGCCCAGCATTGGACAGGT
CCAGGGTCTTGTCGATGATCTGTGTCTTTCCTTTATCTCCTTCGACATGT
CGACTGAATACT
BO01450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6538-PA | 834 | TfIIFbeta-RA | 21..831 | 829..19 | 4005 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-RA | 1118 | CG6538-RA | 106..936 | 848..19 | 4070 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10767163..10767699 | 313..848 | 2575 | 99.1 | Plus |
3R | 32079331 | 3R | 10766804..10767097 | 19..312 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:22:52 has no hits.
BO01450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:36 Download gff for
BO01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6538-PA | 1..834 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:38 Download gff for
BO01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6538-PA | 1..834 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:35:10 Download gff for
BO01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 98..943 | 10..856 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:46 Download gff for
BO01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 98..943 | 10..856 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:46 Download gff for
BO01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10766797..10767097 | 10..312 | 98 | <- | Plus |
3R | 10767163..10767703 | 313..856 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:35:10 Download gff for
BO01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6592519..6592819 | 10..312 | 98 | <- | Plus |
arm_3R | 6592885..6593425 | 313..856 | 98 | | Plus |
BO01450.5prime Sequence
751 bp (750 high quality bases) assembled on 2005-11-30
> BO01450.5prime
GAAGTTATCAGTCGACATGTCGAAGGAGGATAAGGAAAAGACACAGATCA
TCGACAAGGACCTGGACCTGTCCAATGCTGGGCGAGGCGTATGGCTGGTG
AAGGTGCCCAAGTACATTGCCCAGAAATGGGAGAAGGCGCCGACGAACAT
GGACGTGGGCAAGCTCCGGATAAACAAGACACCTGGCCAAAAGGCCCAGG
TCTCGCTTTCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCGAGGAGAAA
ATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGACGCT
CGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTA
CCTCGGCGGCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATT
GTGCAAAAGCTAGAGTGCCGACCCATCGCCGACAACTGCTACATGAAACT
AAAGCTGGAGTCCATACGCAAGGCATCGGAACCACAGCGACGTGTGCAGC
CTATCGACAAAATCGTGCAGAACTTTAAGCCTGTAAAAGACCACGCACAC
AACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCGCGA
CGACAAGAATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATC
AATACTATAACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGC
TACCTGAAGGAGATTCTCAAGGATGTCTGCGATTACAATATGAAGAACCC
G
BO01450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6538-PA | 834 | TfIIFbeta-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-RA | 1118 | CG6538-RA | 106..840 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10767163..10767699 | 553..17 | 2685 | 100 | Minus |
3R | 32079331 | 3R | 10766900..10767097 | 751..554 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:23:00 has no hits.
BO01450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:37 Download gff for
BO01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6538-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:40 Download gff for
BO01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6538-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:35:13 Download gff for
BO01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 98..840 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:52 Download gff for
BO01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 98..840 | 9..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:52 Download gff for
BO01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10766900..10767097 | 554..751 | 100 | <- | Minus |
3R | 10767163..10767703 | 9..553 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:35:13 Download gff for
BO01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6592622..6592819 | 554..751 | 100 | <- | Minus |
arm_3R | 6592885..6593425 | 9..553 | 99 | | Minus |
BO01450.complete Sequence
865 bp (865 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629502
> BO01450.complete
GAAGTTATCAGTCGACATGTCGAAGGAGGATAAGGAAAAGACACAGATCA
TCGACAAGGACCTGGACCTGTCCAATGCTGGGCGAGGCGTATGGCTGGTG
AAGGTGCCCAAGTACATTGCCCAGAAATGGGAGAAGGCGCCGACGAACAT
GGACGTGGGCAAGCTCCGGATAAACAAGACACCTGGCCAAAAGGCCCAGG
TCTCGCTTTCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCGAGGAGAAA
ATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGACGCT
CGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTA
CCTCGGCGGCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATT
GTGCAAAAGCTAGAGTGCCGACCCATCGCCGACAACTGCTACATGAAACT
AAAGCTGGAGTCCATACGCAAGGCATCGGAACCACAGCGACGTGTGCAGC
CTATCGACAAAATCGTGCAGAACTTTAAGCCTGTAAAAGACCACGCACAC
AACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCGCGA
CGACAAGAATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATC
AATACTATAACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGC
TACCTGAAGGAGATTCTCAAGGATGTCTGCGATTACAATATGAAGAACCC
GCACAAGAACATGTGGGAGCTCAAGAAAGAATATCGCCACTACAAGACTG
AAGAGAAGAAAGAGGAGGAGCACAAGTCAGGCAGCAGCGACTCGGAGGCA
AGCTTTCTAGACCAT
BO01450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-RA | 834 | CG6538-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-RA | 1118 | CG6538-RA | 106..936 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10767163..10767699 | 553..17 | 2685 | 100 | Minus |
3R | 32079331 | 3R | 10766804..10767097 | 847..554 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:58:57 has no hits.
BO01450.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:03 Download gff for
BO01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 1..834 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:48 Download gff for
BO01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 240..1085 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:01 Download gff for
BO01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 106..936 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:04 Download gff for
BO01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 240..1085 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:18 Download gff for
BO01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 106..936 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:18 Download gff for
BO01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10766800..10767097 | 554..849 | 99 | <- | Minus |
3R | 10767163..10767699 | 17..553 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:01 Download gff for
BO01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6592522..6592819 | 554..849 | 99 | <- | Minus |
arm_3R | 6592885..6593421 | 17..553 | 100 | | Minus |
BO01450.pep Sequence
Translation from 16 to 865
> BO01450.pep
MSKEDKEKTQIIDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKL
RINKTPGQKAQVSLSLTPAVLALDPEEKIPTEHILDVSQVTKQTLGVFSH
MAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLECRPIADNCYMKLKLESI
RKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKARDDKNAV
MDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMW
ELKKEYRHYKTEEKKEEEHKSGSSDSEASFLDH
BO01450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-PA | 277 | CG6538-PA | 1..277 | 1..277 | 1453 | 100 | Plus |