Clone Sequence Records
BO01454.3prime Sequence
800 bp (759 high quality bases) assembled on 2005-11-30
> BO01454.3prime
ATGGTCTAGAAAGCTTGCGCAATTTCGGCAGTCCTCGTGGAAGGGTTCTA
GAGTGCGCAGGTCCCGCCACGTCGGAGGCAATCCGTTCACCACGAATTTC
CCACAACGCTTGCAGGGCTCCAGGAAAAGTTTGACGTGGCTGTTCAGCCA
GGTTATATAGCTTTTCACTGCCAGATCGGGCAACGTCGGCGAAAAGAAAT
GCAGCATTGCTGAGTGAGCATGATCCTGGACTTTGCGGAACACCTCGTAA
CGTGACTCGGCCCACAGGTCGTCATGCTCCAGCGGCTCATCGAATCCCTT
AACCGTAACCCACTCTATAAGCACTCCTTTGAAGACAATAGCCGCCTTCA
TCACGTTACTTATTGTTACGATGGTGACAGCGTTTGTGCCGAAGGGACGA
AAAATTCTGTACGAAGTATGCGGAGGGGTGTTGATCTCACTCAGGAGCTT
ATCTATGTGGTCTGGATCGTTGTTGAAGGACGAGAAGGGCAGTCGCTGGC
GCTTCTGCGAGCAGTAATTGTAGGAGCGCCTGAGTGTGTTCTGGTTGAGA
TTGTTGAAGGCCAAGAAGCTGTGGTCGTGCACCTTGTCCATCCACTTGTA
GCTGTTCACCAGCTGAGGGTATAGAGCCTGTCGATCCTGCGAAGTTTCCT
GCGCCAGGTAGGCGGTGTTCCCGAGAGAATAGGGTGTTGGTGGCACCGGC
AGTCCATTAATCAGCTGCTCTACCTCACGTATTTGCGAGTTGATGGCTGC
GAATCTCTCCTGGAAGTCATTTACGAACTTATTCCGGCTCTCCCTCGCGC
BO01454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1245-PA | 882 | MED27-RA | 105..879 | 793..19 | 3875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-RA | 1080 | CG1245-RA | 172..946 | 793..19 | 3875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5655761..5656202 | 460..19 | 2210 | 100 | Minus |
3R | 32079331 | 3R | 5655433..5655700 | 728..461 | 1340 | 100 | Minus |
3R | 32079331 | 3R | 5655310..5655375 | 793..728 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:50:17 has no hits.
BO01454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:40 Download gff for
BO01454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-PA | 98..882 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:44 Download gff for
BO01454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1245-PA | 98..882 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:17 Download gff for
BO01454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 165..954 | 10..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:05 Download gff for
BO01454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 165..954 | 10..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:05 Download gff for
BO01454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5655303..5655375 | 728..800 | 97 | -> | Minus |
3R | 5655434..5655700 | 461..727 | 100 | -> | Minus |
3R | 5655761..5656210 | 10..460 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:17 Download gff for
BO01454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1481025..1481097 | 728..800 | 97 | -> | Minus |
arm_3R | 1481156..1481422 | 461..727 | 100 | -> | Minus |
arm_3R | 1481483..1481932 | 10..460 | 99 | | Minus |
BO01454.5prime Sequence
839 bp (677 high quality bases) assembled on 2005-11-30
> BO01454.5prime
GAAGTTATCAGTCGACATGGATAAGTTAAATTCCACTCTAACTGCCGTCA
AAAACCTGCGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGA
ACCGATGGGGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTT
CCAGGAGAGATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGC
TGATTAATGGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACC
GCCTACCTGGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCA
GCTGGTGAACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCT
TGGCCTTCAACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTAC
TGCTCGCAGAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCC
AGACCACATAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTT
CGTACAGAATTTTTCGTCCCTTCGGCACAAACGCTGTCACCATCGTAACA
ATAAGTAACGTGATGAAGGCGGCTATTGTCTTCAAAGGAGTGCTTATAGA
GTGGGTTACGGTTAAGGGATTCGATGAGCCGCTGGAGCATGACGACCTGT
GGGCCGAGTCACGTTACGAGGTGTTCCGCAAAGTCCAGGATCATGCTCAC
TCAGCAATGCTGCATTTCTTTTCGCCGACGTTGCCCGATCTGGCAGTGAA
AAGCTATATAACCTGGCTGAACAGCCACGTCAAACTTTTCCTGAAGCCCT
GCAAGCGTTGTGGGAAATTCGTGGTGAAACGATTGCCTC
BO01454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1245-PA | 882 | MED27-RA | 1..823 | 17..839 | 4040 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-RA | 1080 | CG1245-RA | 68..890 | 17..839 | 4070 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5655761..5656146 | 454..839 | 1885 | 99.2 | Plus |
3R | 32079331 | 3R | 5655433..5655700 | 186..453 | 1340 | 100 | Plus |
3R | 32079331 | 3R | 5655206..5655375 | 17..186 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:36:30 has no hits.
BO01454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:41 Download gff for
BO01454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:45 Download gff for
BO01454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1245-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:01 Download gff for
BO01454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 64..890 | 13..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:08 Download gff for
BO01454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 64..890 | 13..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:08 Download gff for
BO01454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5655202..5655375 | 13..186 | 98 | -> | Plus |
3R | 5655434..5655700 | 187..453 | 100 | -> | Plus |
3R | 5655761..5656146 | 454..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:01 Download gff for
BO01454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1480924..1481097 | 13..186 | 98 | -> | Plus |
arm_3R | 1481156..1481422 | 187..453 | 100 | -> | Plus |
arm_3R | 1481483..1481868 | 454..839 | 99 | | Plus |
BO01454.complete Sequence
913 bp (913 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629503
> BO01454.complete
GAAGTTATCAGTCGACATGGATAAGTTAAATTCCACTCTAACTGCCGTCA
AAAACCTGCGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGA
ACCGATGGGGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTT
CCAGGAGAGATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGC
TGATTAATGGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACC
GCCTACCTGGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCA
GCTGGTGAACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCT
TGGCCTTCAACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTAC
TGCTCGCAGAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCC
AGACCACATAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTT
CGTACAGAATTTTTCGTCCCTTCGGCACAAACGCTGTCACCATCGTAACA
ATAAGTAACGTGATGAAGGCGGCTATTGTCTTCAAAGGAGTGCTTATAGA
GTGGGTTACGGTTAAGGGATTCGATGAGCCGCTGGAGCATGACGACCTGT
GGGCCGAGTCACGTTACGAGGTGTTCCGCAAAGTCCAGGATCATGCTCAC
TCAGCAATGCTGCATTTCTTTTCGCCGACGTTGCCCGATCTGGCAGTGAA
AAGCTATATAACCTGGCTGAACAGCCACGTCAAACTTTTCCTGGAGCCCT
GCAAGCGTTGTGGGAAATTCGTGGTGAACGGATTGCCTCCGACGTGGCGG
GACCTGCGCACTCTAGAACCCTTCCACGAGGACTGCCGAAATTGCGCAAG
CTTTCTAGACCAT
BO01454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-RA | 882 | CG1245-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-RA | 1080 | CG1245-RA | 68..946 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5655761..5656202 | 454..895 | 2210 | 100 | Plus |
3R | 32079331 | 3R | 5655433..5655700 | 186..453 | 1340 | 100 | Plus |
3R | 32079331 | 3R | 5655206..5655375 | 17..186 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:26:50 has no hits.
BO01454.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:05 Download gff for
BO01454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:50 Download gff for
BO01454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 58..948 | 13..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:57 Download gff for
BO01454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 68..946 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:05 Download gff for
BO01454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 58..948 | 13..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:31 Download gff for
BO01454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 68..946 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:31 Download gff for
BO01454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5655206..5655375 | 17..186 | 100 | -> | Plus |
3R | 5655434..5655700 | 187..453 | 100 | -> | Plus |
3R | 5655761..5656202 | 454..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:57 Download gff for
BO01454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1480928..1481097 | 17..186 | 100 | -> | Plus |
arm_3R | 1481156..1481422 | 187..453 | 100 | -> | Plus |
arm_3R | 1481483..1481924 | 454..897 | 99 | | Plus |
BO01454.pep Sequence
Translation from 16 to 913
> BO01454.pep
MDKLNSTLTAVKNLRSNVRLCFEHLADGTDGESGEESRNKFVNDFQERFA
AINSQIREVEQLINGLPVPPTPYSLGNTAYLAQETSQDRQALYPQLVNSY
KWMDKVHDHSFLAFNNLNQNTLRRSYNYCSQKRQRLPFSSFNNDPDHIDK
LLSEINTPPHTSYRIFRPFGTNAVTIVTISNVMKAAIVFKGVLIEWVTVK
GFDEPLEHDDLWAESRYEVFRKVQDHAHSAMLHFFSPTLPDLAVKSYITW
LNSHVKLFLEPCKRCGKFVVNGLPPTWRDLRTLEPFHEDCRNCASFLDH
BO01454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-PA | 293 | CG1245-PA | 1..293 | 1..293 | 1575 | 100 | Plus |