Clone Sequence Records
BO01456.3prime Sequence
869 bp (802 high quality bases) assembled on 2005-11-30
> BO01456.3prime
ATGGTCTAGAAAGCTTGCTGAAGCGCTGTTCGTCTCACCGTTGCTGTCGT
GGAAGTTGGTGCCATTGACGATGAAGGAGGTACCCAGGCCGTACAGGTGT
CCGGAGTACTTCGCATGGTCGATGTTGTCCTCGAAGAACATCTCACGCAT
TTTGAAGAAGGCCATGCCCGTCAGCAGAGCATCCGAGCCGGCCTGATGCT
GGGGGCCCACGCGCCGCAGTTCCAGCTGATCGGCAACCTCCTGCAGGCCG
CCTTTCAGGTTCTTGCACGACTTCATCAGATACTTGATGTCGAAGATGTT
GGGAAAGTAGATGTGCAGCAGATCGAAAAATTCAGATTCGTCCGGGGGCA
GGTTCTGATCGGTGAGCAGCTTTAGAAGGTAGCCAAAATCGTAGCCGGAG
TGGAAGCACAGCCACTTGATGTTTTCCACCAGCACGATGCCAGAGCTCAT
CAGCAGTTCGGCGAAGTCGATGGGATCGATGCCATCCTCCTCGTGCTTCT
TGAACTGAATTCCGGAGTTCTGCAGCAGATCGATCGAGTCCTGCGCATAC
ATGTCCTCGCTCAGGTTAAACTTGAAGTTGAACTGCCAGGTGGAGTAGCC
GGGTGGTGTCTTTCCATCGTCGTCCATGAAGGTAAGGCCCAATTGGATAA
TCCGCAGCAGATCGACATTACAGCGCAGCAGCTGGTAATGATAGTCCGCC
GTGGAGCGGAACTCGCCGACTGGACGTGCTACCACGCCTGGAAACTCGGT
GTCCATGGCCACATAGTGGTACTTCTGCACCACTTTCCGTATGGTGCGGA
ACTCCTCCCTCAGGTTTTGCTTCCACACATCGCGAATGCCGCACTCCTCG
TTGCTGGGTATGTGGGCAT
BO01456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PC | 882 | CG5684-RC | 29..879 | 869..19 | 4180 | 99.6 | Minus |
CG5684-PA | 894 | CG5684-RA | 41..891 | 869..19 | 4180 | 99.6 | Minus |
CG5684-PB | 882 | CG5684-RB | 29..879 | 869..19 | 4180 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 1893 | CG5684-RB | 567..1417 | 869..19 | 4210 | 99.6 | Minus |
Pop2-RA | 1688 | CG5684-RA | 362..1212 | 869..19 | 4210 | 99.6 | Minus |
Pop2-RC | 1827 | CG5684-RC | 501..1351 | 869..19 | 4210 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 142..561 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 12000750..12001059 | 560..869 | 1505 | 99 | Plus |
3L | 28110227 | 3L | 11998874..11998998 | 19..143 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:17:44 has no hits.
BO01456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:44 Download gff for
BO01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PC | 29..882 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:49 Download gff for
BO01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PB | 29..882 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:38 Download gff for
BO01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 501..1351 | 19..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:43 Download gff for
BO01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 501..1351 | 19..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:43 Download gff for
BO01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998874..11998996 | 19..141 | 100 | <- | Plus |
3L | 12000273..12000690 | 142..559 | 100 | <- | Plus |
3L | 12000750..12001059 | 560..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:38 Download gff for
BO01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11991974..11992096 | 19..141 | 100 | <- | Plus |
arm_3L | 11993373..11993790 | 142..559 | 100 | <- | Plus |
arm_3L | 11993850..11994159 | 560..869 | 99 | | Plus |
BO01456.5prime Sequence
823 bp (703 high quality bases) assembled on 2005-11-30
> BO01456.5prime
GAAGTTATCAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCC
ACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAAC
CTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTA
TGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCG
AGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTC
GATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGG
AAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACC
TGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCC
GGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTT
CGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGT
GGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTC
ACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCA
CATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCA
AGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGG
CGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCAT
GGCCTTCTTCAAATGCGTGAGATGTTCTTCGAGGACAACATCGACCATGC
GAAGTACTCCGGACACCTGTACG
BO01456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PC | 882 | CG5684-RC | 1..747 | 17..763 | 3735 | 100 | Plus |
CG5684-PA | 894 | CG5684-RA | 13..759 | 17..763 | 3735 | 100 | Plus |
CG5684-PB | 882 | CG5684-RB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG5684-PC | 882 | CG5684-RC | 746..808 | 761..823 | 315 | 100 | Plus |
CG5684-PA | 894 | CG5684-RA | 758..820 | 761..823 | 315 | 100 | Plus |
CG5684-PB | 882 | CG5684-RB | 746..808 | 761..823 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 1893 | CG5684-RB | 539..1346 | 17..823 | 4015 | 99.9 | Plus |
Pop2-RA | 1688 | CG5684-RA | 334..1141 | 17..823 | 4015 | 99.9 | Plus |
Pop2-RC | 1827 | CG5684-RC | 473..1280 | 17..823 | 4015 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000282..12000692 | 763..353 | 2055 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001087 | 354..17 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 11998945..11998998 | 823..770 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:15:49 has no hits.
BO01456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:45 Download gff for
BO01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PC | 1..808 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:51 Download gff for
BO01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PB | 1..808 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:31 Download gff for
BO01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1280 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:14 Download gff for
BO01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1280 | 17..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:14 Download gff for
BO01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998945..11998996 | 772..823 | 100 | <- | Minus |
3L | 12000273..12000690 | 355..771 | 99 | <- | Minus |
3L | 12000750..12001090 | 14..354 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:31 Download gff for
BO01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11992045..11992096 | 772..823 | 100 | <- | Minus |
arm_3L | 11993373..11993790 | 355..771 | 99 | <- | Minus |
arm_3L | 11993850..11994190 | 14..354 | 99 | <- | Minus |
BO01456.complete Sequence
913 bp (913 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629504
> BO01456.complete
GAAGTTATCAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCC
ACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAAC
CTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTA
TGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCG
AGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTC
GATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGG
AAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACC
TGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCC
GGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTT
CGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGT
GGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTC
ACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCA
CATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCA
AGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGG
CGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCAT
GGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACAACATCGACCATG
CGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCCTTCATCGTCAAT
GGCACCAACTTCCACGACAGCAACGGTGAGACGAACAGCGCTTCAGCAAG
CTTTCTAGACCAT
BO01456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 882 | CG5684-PB | 1..879 | 17..895 | 4395 | 100 | Plus |
Pop2-RA | 894 | CG5684-PA | 13..891 | 17..895 | 4395 | 100 | Plus |
Pop2-RC | 882 | CG5684-PC | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 1893 | CG5684-RB | 539..1417 | 17..895 | 4395 | 100 | Plus |
Pop2-RA | 1688 | CG5684-RA | 334..1212 | 17..895 | 4395 | 100 | Plus |
Pop2-RC | 1827 | CG5684-RC | 473..1351 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 772..353 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001087 | 354..17 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 11998874..11998998 | 895..771 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:37:20 has no hits.
BO01456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:06 Download gff for
BO01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:41 Download gff for
BO01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RB | 537..1415 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:15 Download gff for
BO01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1351 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:06 Download gff for
BO01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RB | 537..1415 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:44 Download gff for
BO01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1351 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:44 Download gff for
BO01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998871..11998996 | 773..897 | 98 | <- | Minus |
3L | 12000273..12000690 | 355..772 | 100 | <- | Minus |
3L | 12000750..12001087 | 17..354 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:15 Download gff for
BO01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11991971..11992096 | 773..897 | 98 | <- | Minus |
arm_3L | 11993373..11993790 | 355..772 | 100 | <- | Minus |
arm_3L | 11993850..11994187 | 17..354 | 100 | | Minus |
BO01456.pep Sequence
Translation from 16 to 913
> BO01456.pep
MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDT
EFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPG
YSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLM
SSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPN
IFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKM
REMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSASASFLDH
BO01456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-PB | 293 | CG5684-PB | 1..293 | 1..293 | 1568 | 100 | Plus |
Pop2-PC | 293 | CG5684-PC | 1..293 | 1..293 | 1568 | 100 | Plus |
Pop2-PA | 297 | CG5684-PA | 5..297 | 1..293 | 1568 | 100 | Plus |
Pop2-PD | 357 | CG5684-PD | 1..253 | 1..253 | 1346 | 99.6 | Plus |
Pop2-PE | 361 | CG5684-PE | 5..257 | 1..253 | 1346 | 99.6 | Plus |