Clone Sequence Records
BO01458.3prime Sequence
878 bp (839 high quality bases) assembled on 2005-11-30
> BO01458.3prime
ATGGTCTAGAAAGCTTGCGATATGGTGCCAGCGCTGCCTGCAGTTGAAGG
CGAGGTTGGCTAAGGCCTCTGCTGCTTCCAGTTCGTCCTTATGATGAAGC
ATCCAGCGTCCACCACGACCAGCCCCAGACACATCTGTGGTAAAGATCGC
TTGTCCACAACTGCTATTACTGCTAGCTTTCTGCCTGGTCATATTCCACT
CGATGTGATAATTGTTCCTGTCCGGTGTGAATTTTGCTGCACTTTCCAGC
CACTTGTTGAGTTGCGTACCCTGTTGACTGGTCGTTTTTGCCGTGGAACT
ATCTCGCATATACTTTTCCATCATCTGATGCTTGTACTTGGTCTTACCCC
CTGTTTGTGCTGATATCCGCTCGGTCAGACCTGCAGATCCTACAAACAAT
ATCGGCTTGTATGGGGATGAAGGTTCATTATTGGCATTGCCATCGCTACC
AGTACTGTGGCTGGAAAACTCTTCATTATCGTCGCCTTCGTCATCCTCCG
CAGGACATGAGTGCATCTCCTCCTCCCAAATGCTATCCTCCGACGAGATG
CTAAATTGTTCCACATTACCCCTTGCATTGTGATTGTAATTTTTGATCAG
ATGGCCCCAGGATTTCTTGGCTTTCTCTCGCTCCGAGTTTTTAAGCTTTC
TTCGCCAGTTTGCAAACCAATTGCAAATCTGAGTGTAAGTAAGTCCAGTC
TCTGCAGCAAGCTGTTTTTTCTCCTCCCTGCTAGGATAGGGATTCTCCCG
GCGACGAATTAACCAGTCCTTTAGCATCCTCTTAATGTCGGGAGTAAATA
ATCTCTTTGTAGCTCGGGATGCTGGATGCAACTCCTCCTCTGGTGGNCAG
GCTCGTCTGCTGTGTCGACGATTTTCTT
BO01458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-PA | 885 | CG11617-RA | 27..882 | 874..19 | 4261 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-RB | 1290 | CG11617-RB | 131..986 | 874..19 | 4269 | 99.9 | Minus |
CG11617-RA | 1259 | CG11617-RA | 100..955 | 874..19 | 4269 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 205271..205946 | 184..859 | 3369 | 99.9 | Plus |
2L | 23513712 | 2L | 205047..205214 | 19..186 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:53:25 has no hits.
BO01458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:45 Download gff for
BO01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-PA | 23..885 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:52 Download gff for
BO01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-PA | 23..885 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:03 Download gff for
BO01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 96..960 | 14..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:19 Download gff for
BO01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 96..960 | 14..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:19 Download gff for
BO01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 205042..205212 | 14..184 | 98 | <- | Plus |
2L | 205272..205943 | 185..856 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:03 Download gff for
BO01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 205042..205212 | 14..184 | 98 | <- | Plus |
arm_2L | 205272..205943 | 185..856 | 99 | <- | Plus |
BO01458.5prime Sequence
847 bp (789 high quality bases) assembled on 2005-11-30
> BO01458.5prime
GAAGTTATCAGTCGACATGGACAAGTCAACGCGGCCTAAACGAAATCGTC
GACACAGCAGACGAGCCTGGCCACCAGAGGAGGAGTTGCATCCAGCATCC
CGAGCTACAAAGAGATTATTTACTCCCGACATTAAGAGGATGCTAAAGGA
CTGGTTAATTCGTCGCCGGGAGAATCCCTATCCTAGCAGGGAGGAGAAAA
AACAGCTTGCTGCAGAGACTGGACTTACTTACACTCAGATTTGCAATTGG
TTTGCAAACTGGCGAAGAAAGCTTAAAAACTCGGAGCGAGAGAAAGCCAA
GAAATCCTGGGGCCATCTGATCAAAAATTACAATCACAATGCAAGGGGTA
ATGTGGAACAATTTAGCATCTCGTCGGAGGATAGCATTTGGGAGGAGGAG
ATGCACTCATGTCCTGCGGAGGATGACGAAGGCGACGATAATGAAGAGTT
TTCCAGCCACAGTACTGGTAGCGATGGCAATGCCAATAATGAACCTTCAT
CCCCATACAAGCCGATATTGTTTGTAGGATCTGCAGGTCTGACCGAGCGG
ATATCAGCACAAACAGGGGGTAAGACCAAGTACAAGCATCAGATGATGGA
AAAGTATATGCGAGATAGTTCCACGGCAAAAACGACCAGTCAACAGGGTA
CGCAACTCAACAAGTGGCTGGAAAGTGCAGCAAAATTCACACCGGACAGG
AACAATTATCACATCGAGTGGAATATGACCAGGCAGAAAGCTAGCAGTAA
TAGCAGTTGTGGACAAGCGATCTTTACCACAGATGTGTCTGGGGCTGGTC
GTGGTGGACGCTGGATGCTTCATCATAAGGACGAACTGGAAGCAGCA
BO01458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-PA | 885 | CG11617-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-RB | 1290 | CG11617-RB | 104..935 | 16..847 | 4160 | 100 | Plus |
CG11617-RA | 1259 | CG11617-RA | 73..904 | 16..847 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 205271..205946 | 733..58 | 3380 | 100 | Minus |
2L | 23513712 | 2L | 205098..205214 | 847..731 | 585 | 100 | Minus |
2L | 23513712 | 2L | 206001..206045 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:17:54 has no hits.
BO01458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:46 Download gff for
BO01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:28:54 Download gff for
BO01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:41 Download gff for
BO01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 73..903 | 16..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:44 Download gff for
BO01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 73..903 | 16..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:44 Download gff for
BO01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 205099..205212 | 733..846 | 100 | <- | Minus |
2L | 205272..205943 | 61..732 | 100 | <- | Minus |
2L | 206001..206054 | 8..60 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:41 Download gff for
BO01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 205099..205212 | 733..846 | 100 | <- | Minus |
arm_2L | 205272..205943 | 61..732 | 100 | <- | Minus |
arm_2L | 206001..206054 | 8..60 | 92 | | Minus |
BO01458.complete Sequence
916 bp (916 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629505
> BO01458.complete
GAAGTTATCAGTCGACATGGACAAGTCAACGCGGCCTAAACGAAATCGTC
GACACAGCAGACGAGCCTGGCCACCAGAGGAGGAGTTGCATCCAGCATCC
CGAGCTACAAAGAGATTATTTACTCCCGACATTAAGAGGATGCTAAAGGA
CTGGTTAATTCGTCGCCGGGAGAATCCCTATCCTAGCAGGGAGGAGAAAA
AACAGCTTGCTGCAGAGACTGGACTTACTTACACTCAGATTTGCAATTGG
TTTGCAAACTGGCGAAGAAAGCTTAAAAACTCGGAGCGAGAGAAAGCCAA
GAAATCCTGGGGCCATCTGATCAAAAATTACAATCACAATGCAAGGGGTA
ATGTGGAACAATTTAGCATCTCGTCGGAGGATAGCATTTGGGAGGAGGAG
ATGCACTCATGTCCTGCGGAGGATGACGAAGGCGACGATAATGAAGAGTT
TTCCAGCCACAGTACTGGTAGCGATGGCAATGCCAATAATGAACCTTCAT
CCCCATACAAGCCGATATTGTTTGTAGGATCTGCAGGTCTGACCGAGCGG
ATATCAGCACAAACAGGGGGTAAGACCAAGTACAAGCATCAGATGATGGA
AAAGTATATGCGAGATAGTTCCACGGCAAAAACGACCAGTCAACAGGGTA
CGCAACTCAACAAGTGGCTGGAAAGTGCAGCAAAATTCACACCGGACAGG
AACAATTATCACATCGAGTGGAATATGACCAGGCAGAAAGCTAGCAGTAA
TAGCAGTTGTGGACAAGCGATCTTTACCACAGATGTGTCTGGGGCTGGTC
GTGGTGGACGCTGGATGCTTCATCATAAGGACGAACTGGAAGCAGCAGAG
GCCTTAGCCAACCTCGCCTTCAACTGCAGGCAGCGCTGGCACCATATCGC
AAGCTTTCTAGACCAT
BO01458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-RB | 885 | CG11617-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
CG11617-RA | 885 | CG11617-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-RB | 1290 | CG11617-RB | 104..986 | 16..898 | 4415 | 100 | Plus |
CG11617-RA | 1259 | CG11617-RA | 73..955 | 16..898 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 205271..205946 | 733..58 | 3380 | 100 | Minus |
2L | 23513712 | 2L | 205047..205214 | 898..731 | 840 | 100 | Minus |
2L | 23513712 | 2L | 206001..206045 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:19:54 has no hits.
BO01458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:07 Download gff for
BO01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 1..885 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:53 Download gff for
BO01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 73..960 | 16..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:30:20 Download gff for
BO01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 74..955 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:08 Download gff for
BO01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 73..960 | 16..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:59 Download gff for
BO01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 74..955 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:59 Download gff for
BO01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 205045..205212 | 733..900 | 98 | <- | Minus |
2L | 205272..205943 | 61..732 | 100 | <- | Minus |
2L | 206001..206044 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:30:20 Download gff for
BO01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 205045..205212 | 733..900 | 98 | <- | Minus |
arm_2L | 205272..205943 | 61..732 | 100 | <- | Minus |
arm_2L | 206001..206044 | 17..60 | 100 | | Minus |
BO01458.pep Sequence
Translation from 16 to 916
> BO01458.pep
MDKSTRPKRNRRHSRRAWPPEEELHPASRATKRLFTPDIKRMLKDWLIRR
RENPYPSREEKKQLAAETGLTYTQICNWFANWRRKLKNSEREKAKKSWGH
LIKNYNHNARGNVEQFSISSEDSIWEEEMHSCPAEDDEGDDNEEFSSHST
GSDGNANNEPSSPYKPILFVGSAGLTERISAQTGGKTKYKHQMMEKYMRD
SSTAKTTSQQGTQLNKWLESAAKFTPDRNNYHIEWNMTRQKASSNSSCGQ
AIFTTDVSGAGRGGRWMLHHKDELEAAEALANLAFNCRQRWHHIASFLDH
BO01458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-PB | 294 | CG11617-PB | 1..294 | 1..294 | 1596 | 100 | Plus |
CG11617-PA | 294 | CG11617-PA | 1..294 | 1..294 | 1596 | 100 | Plus |