Clone Sequence Records
BO01462.3prime Sequence
910 bp (764 high quality bases) assembled on 2005-11-30
> BO01462.3prime
ATGGTCTAGAAAGCTTGCGCTGGACGCGCCCAGTTGATTCTTCATATGGG
CAGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAAACGGTGAGCCACCGCCG
GTCGGTGTCTGTGGGCCATTGTTGTTGTTATTGTGATCGCCAGGGGTGCG
CGGTCCGTTGACCATGCCCACGCCATTCACATTGCCGCCACCGGGTCCGC
CGCCCAGCAATCCACCAGCTGTATTCTGCGCCCCGGCCGCTCCCGTCGGT
GAGCCCTGGCCCAAGGAGGAGACGTGTCGCTTGAGCATCGGATGATTGGC
CATCGATGCGAAGACCAGGCGCTCCTCGTAGTCGTACTCGCAGAGTATCT
TGTTCTCGCACAGGTAGAAACGGTCGCCCACACAGAATCTGTGGTTACAC
TGCTGACAAGCGAAGCACTCCAAGTGATAGACATTGGTCCTTGCACGCAT
CACCATCTCGAAGGCTGGGATCACCTTGCTGCAGGCGGCGCAGTAGCCCG
TGTTGCCAAACAATCTCAAGTAGTCCCGCTTGCAGAGCATCAGGTTGCCC
TTGGTGTAGAGCGTGGAGCCCACCTCGCCCAGGCGGCAGTCGCAGCAGCC
GCACTTGAGGCAGTCCTCGTGCCACAGCATGTCCAGGGCGCGGAGGAGAT
AGCGGTCCTGGATGTGCTTGCCGCAGCCGGCGCACAATTGGCTGCCGTTG
TTGTTGTTATTGTTATTATTGTTGGCAGCGGCGGCGATGCTCTGGACATT
CCCGTTGCCATTTGTGCCCGCACCGGCACCGCCGGAGTTGACCACATTGA
CCACGTTCCCATTGCCATTGGGATTGGGCCCGTTGTCTGGCCACCGCTGT
TCATGCCGGCGTTGCTTTGCTGCGACTGCTGCTGCTGCTGCTGCTGTTGG
TGGGAGGAAA
BO01462.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6500-PA | 942 | Bx-RA | 196..939 | 762..19 | 3645 | 99.5 | Minus |
CG6500-PB | 1155 | Bx-RB | 409..1152 | 762..19 | 3645 | 99.5 | Minus |
CG6500-PC | 942 | Bx-RC | 196..939 | 762..19 | 3645 | 99.5 | Minus |
CG6500-PA | 942 | Bx-RA | 47..121 | 910..836 | 350 | 98.6 | Minus |
CG6500-PB | 1155 | Bx-RB | 260..334 | 910..836 | 350 | 98.6 | Minus |
CG6500-PC | 942 | Bx-RC | 47..121 | 910..836 | 350 | 98.6 | Minus |
CG6500-PA | 942 | Bx-RA | 122..187 | 836..771 | 330 | 100 | Minus |
CG6500-PB | 1155 | Bx-RB | 335..400 | 836..771 | 330 | 100 | Minus |
CG6500-PC | 942 | Bx-RC | 122..187 | 836..771 | 330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 2494 | CG44425-RD | 809..1701 | 910..19 | 4320 | 99 | Minus |
Bx-RC | 3413 | CG44425-RC | 645..1537 | 910..19 | 4320 | 99 | Minus |
Bx-RB | 2051 | CG44425-RB | 366..1258 | 910..19 | 4320 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566742..18567138 | 910..515 | 1860 | 98.5 | Minus |
X | 23542271 | X | 18570561..18570933 | 391..19 | 1820 | 99.2 | Minus |
X | 23542271 | X | 18567509..18567636 | 516..389 | 640 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 16:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 759..688 | 125 | 67.1 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 728..692 | 122 | 81.1 | Minus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3144..3208 | 762..695 | 116 | 67.6 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 724..689 | 108 | 77.8 | Minus |
BO01462.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:30:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:01 Download gff for
BO01462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6500-PA | 50..942 | 15..907 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:36 Download gff for
BO01462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 369..1261 | 15..907 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:27:09 Download gff for
BO01462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 369..1261 | 15..907 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:27:09 Download gff for
BO01462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566745..18567138 | 515..907 | 98 | -> | Minus |
X | 18567511..18567636 | 389..514 | 100 | -> | Minus |
X | 18570564..18570936 | 15..388 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:36 Download gff for
BO01462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460778..18461171 | 515..907 | 98 | -> | Minus |
arm_X | 18461544..18461669 | 389..514 | 100 | -> | Minus |
arm_X | 18464597..18464969 | 15..388 | 98 | | Minus |
BO01462.5prime Sequence
857 bp (737 high quality bases) assembled on 2005-11-30
> BO01462.5prime
GAAGTTATCAGTCGACATGATGACTATGGACATTACCAAAACCGAACCCG
GTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGCAGTCG
CAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGGCCCAA
TCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGGTGCCG
GTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCGCTGCC
AACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCGCCGGCTG
CGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACATGCTGT
GGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGGGCGAG
GTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAGCGGGA
CTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAGCAAGG
TGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCTATCAC
TTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTGGGCGA
CCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTACGAGG
AGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGATGCTCAAGCGACAC
GTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGGCCGGGGCGCAGAA
TACAGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGCGGCAATGTGAATG
GCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGATCACAATAACAAC
AACAATG
BO01462.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6500-PA | 942 | Bx-RA | 1..841 | 17..857 | 4130 | 99.6 | Plus |
CG6500-PB | 1155 | Bx-RB | 214..1054 | 17..857 | 4130 | 99.6 | Plus |
CG6500-PC | 942 | Bx-RC | 1..841 | 17..857 | 4130 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 2494 | CG44425-RD | 763..1603 | 17..857 | 4160 | 99.6 | Plus |
Bx-RC | 3413 | CG44425-RC | 599..1439 | 17..857 | 4160 | 99.6 | Plus |
Bx-RB | 2051 | CG44425-RB | 320..1160 | 17..857 | 4160 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566696..18567138 | 17..459 | 2215 | 100 | Plus |
X | 23542271 | X | 18570561..18570835 | 583..857 | 1330 | 98.9 | Plus |
X | 23542271 | X | 18567509..18567636 | 458..585 | 640 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 21:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 215..286 | 125 | 67.1 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 200..279 | 122 | 65 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 246..282 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 184..277 | 112 | 59.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 250..285 | 108 | 77.8 | Plus |
BO01462.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:30:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:02 Download gff for
BO01462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6500-PC | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:05 Download gff for
BO01462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 320..1160 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:27 Download gff for
BO01462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 320..1160 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:27 Download gff for
BO01462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18570564..18570835 | 586..857 | 98 | | Plus |
X | 18566696..18567138 | 17..459 | 100 | -> | Plus |
X | 18567511..18567636 | 460..585 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:05 Download gff for
BO01462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460729..18461171 | 17..459 | 100 | -> | Plus |
arm_X | 18461544..18461669 | 460..585 | 100 | -> | Plus |
arm_X | 18464597..18464868 | 586..857 | 98 | | Plus |
BO01462.complete Sequence
973 bp (973 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629507
> BO01462.complete
GAAGTTATCAGTCGACATGATGACTATGGACATTACCAAAACCGAACCCG
GTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGCAGTCG
CAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGGCCCAA
TCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGGTGCCG
GTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCGCTGCC
AACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCGCCGGCTG
CGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACATGCTGT
GGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGGGCGAG
GTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAGCGGGA
CTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAGCAAGG
TGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCTATCAC
TTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTGGGCGA
CCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTACGAGG
AGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGATGCTCAAGCGACAC
GTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGGCCGGGGCGCAGAA
TACAGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGCGGCAATGTGAATG
GCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGATCACAATAACAAC
AACAATGGCCCACAGACACCGACCGGCGGTGGCTCACCGTTTGCCGCTGC
TGCTGCTGCCGCCGCCGCCGCTGCCCATATGAAGAATCAACTGGGCGCGT
CCAGCGCAAGCTTTCTAGACCAT
BO01462.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 1275 | CG44425-PD | 1..939 | 17..955 | 4650 | 99.7 | Plus |
Bx-RC | 942 | CG44425-PC | 1..939 | 17..955 | 4650 | 99.7 | Plus |
Bx-RB | 1155 | CG44425-PB | 214..1152 | 17..955 | 4650 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 2494 | CG44425-RD | 763..1701 | 17..955 | 4650 | 99.7 | Plus |
Bx-RC | 3413 | CG44425-RC | 599..1537 | 17..955 | 4650 | 99.7 | Plus |
Bx-RB | 2051 | CG44425-RB | 320..1258 | 17..955 | 4650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566696..18567138 | 17..459 | 2215 | 100 | Plus |
X | 23542271 | X | 18570561..18570933 | 583..955 | 1820 | 99.2 | Plus |
X | 23542271 | X | 18567509..18567636 | 458..585 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 215..286 | 125 | 67.1 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 200..279 | 122 | 65 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 246..282 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 184..277 | 112 | 59.6 | Plus |
BO01462.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:11 Download gff for
BO01462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RC | 1..942 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:58 Download gff for
BO01462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RC | 592..1538 | 9..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:17 Download gff for
BO01462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 320..1258 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:11 Download gff for
BO01462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RC | 592..1538 | 9..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:19 Download gff for
BO01462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 320..1258 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:19 Download gff for
BO01462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18570564..18570933 | 586..957 | 98 | | Plus |
X | 18566696..18567138 | 17..459 | 100 | -> | Plus |
X | 18567511..18567636 | 460..585 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:17 Download gff for
BO01462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460729..18461171 | 17..459 | 100 | -> | Plus |
arm_X | 18461544..18461669 | 460..585 | 100 | -> | Plus |
arm_X | 18464597..18464966 | 586..957 | 98 | | Plus |
BO01462.pep Sequence
Translation from 16 to 973
> BO01462.pep
MMTMDITKTEPGLVGLSSNQQQQQQQQSQQSNAGMNSGGQNNGPNPNGNG
NVVNVVNSGGAGGGNNGNGNVQSIAAAANNNNNNNNNGSQLCAGCGKHIQ
DRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLF
GNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLC
ENKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNTAGGL
LGGGPGGGNVNGVGMVNGPRTPGDHNNNNNGPQTPTGGGSPFAAAAAAAA
AAAHMKNQLGASSASFLDH
BO01462.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-PC | 313 | CG44425-PC | 1..313 | 1..313 | 1709 | 100 | Plus |
Bx-PA | 313 | CG44425-PA | 1..313 | 1..313 | 1709 | 100 | Plus |
Bx-PF | 383 | CG44425-PF | 71..383 | 1..313 | 1709 | 100 | Plus |
Bx-PB | 384 | CG44425-PB | 72..384 | 1..313 | 1709 | 100 | Plus |
Bx-PD | 424 | CG44425-PD | 1..313 | 1..313 | 1709 | 100 | Plus |